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Genotype Selection - Genes

101927651
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Association Results 1 - 3 of 3 Searched by gene IDs retrieved from gene search.
Genes 1 - 1 of 1 Searched by gene names and/or gene IDs.
SNPs 1 - 50 of 6935 Searched by gene symbols retrieved from gene search.
eQTL Data 1 - 7 of 7 Searched by gene IDs retrieved from gene search.
dbGaP Studies 1 - 23 of 23Searched by traits retrieved from association results.
Genome View 1 gene over 1 chromosome.
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Select broad trait category to limit the items shown in the trait selection.
Select trait for search.  Selection of a trait will limit the trait categories shown above.
Data shown are selected columns matching search criteria, taken directly from NCBI’s GTEx database and browser.  This database aims to provide a central resource to archive and display associations between genetic variation and high-throughput molecular-level phenotypes.  This effort originated with the NIH GTEx roadmap project; however the scope of this resource will be extended to include any available genotype/molecular phenotype datasets.

Get information.Genes

#
Symbol
Description
Location
OMIM
LINC01927long intergenic non-protein coding RNA 1927 18 : 76,639,011 - 76,622,781
{ "section": "GENE", "summary": "1 - 1 of 1", "retstart": 0, "pageSize": 100, "count": 1, "SEQ": { "chr": [ ["18", 76622781, 76639011] ], "markers": { "18": [ ["LINC01927", "NC_000018.10", 76622781, 76639011, "long intergenic non-protein coding RNA 1927", "", 101927651] ] }, "unmapped": [ ] } }

Get information.Genome View

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Summary
1 gene searched by gene names and/or gene IDs over 1 chromosome.
SNPGeneCountLocation bps
SNP symbolGene symbol1 SNP or geneLocation symbolless than 2M bps
SNP symbolGene symbol2 - 10 SNPs or genesLocation symbolat least 2M bps
SNP symbolGene symbol11 - 20 SNPs or genes 
SNP symbolGene symbolmore than 20 SNPs or genes
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Get information.Association Results

#
  Trait  
rs #
  Context  
  Gene  
  Location  
  P-value  
  Source  
  Study  
Population
  PubMed  
1 Lymphocyte Count rs2406210 intron LOC101927651 18 : 76,636,959 1.854 x 10-5 dbGaP phs000221 European
2 Platelet Function Tests rs17649429 intron LOC101927651 18 : 76,623,397 6.434 x 10-5 dbGaP phs000391 European
3 Heart Failure rs9945487 intron LOC101927651 18 : 76,631,199 4.031 x 10-4 dbGaP phs000226 African American
{ "section": "assoc", "summary": "1 - 3 of 3", "mesh": [ "Heart Failure", "Lymphocyte Count", "Platelet Function Tests" ], "genes": [101927651], "snps": [2406210, 9945487, 17649429], "page": 1, "call": "BuildGaP", "pageSize": 50, "recCount": 3 }

Get information.SNPs

1 - 50 of 6935 < Previous Next >  Page  GoDownload Modify Search
#
rs#
Location
Function Class
Gene
Diversity
1 rs2122144119 18 : 76,640,986 2KB_upstream_variant, upstream_transcript_variant LINC01927 n/a
2 rs2122144113 18 : 76,640,977 2KB_upstream_variant, upstream_transcript_variant LINC01927 Yes
3 rs2122144024 18 : 76,640,899 2KB_upstream_variant, upstream_transcript_variant LINC01927 n/a
4 rs2122144012 18 : 76,640,893 2KB_upstream_variant, upstream_transcript_variant LINC01927 n/a
5 rs2122143991 18 : 76,640,869 2KB_upstream_variant, upstream_transcript_variant LINC01927 n/a
6 rs2122143986 18 : 76,640,869 2KB_upstream_variant, upstream_transcript_variant LINC01927 n/a
7 rs2122143928 18 : 76,640,817 2KB_upstream_variant, upstream_transcript_variant LINC01927 n/a
8 rs2122143897 18 : 76,640,786 2KB_upstream_variant, upstream_transcript_variant LINC01927 Yes
9 rs2122143855 18 : 76,640,750 2KB_upstream_variant, upstream_transcript_variant LINC01927 n/a
10 rs2122143840 18 : 76,640,739 2KB_upstream_variant, upstream_transcript_variant LINC01927 n/a
11 rs2122143836 18 : 76,640,738 2KB_upstream_variant, upstream_transcript_variant LINC01927 n/a
12 rs2122143799 18 : 76,640,693 2KB_upstream_variant, upstream_transcript_variant LINC01927 n/a
13 rs2122143792 18 : 76,640,689 2KB_upstream_variant, upstream_transcript_variant LINC01927 n/a
14 rs2122143773 18 : 76,640,673 2KB_upstream_variant, upstream_transcript_variant LINC01927 n/a
15 rs2122143766 18 : 76,640,665 2KB_upstream_variant, upstream_transcript_variant LINC01927 n/a
16 rs2122143761 18 : 76,640,664 2KB_upstream_variant, upstream_transcript_variant LINC01927 n/a
17 rs2122143727 18 : 76,640,638 2KB_upstream_variant, upstream_transcript_variant LINC01927 n/a
18 rs2122143661 18 : 76,640,594 2KB_upstream_variant, upstream_transcript_variant LINC01927 n/a
19 rs2122143653 18 : 76,640,586 2KB_upstream_variant, upstream_transcript_variant LINC01927 n/a
20 rs2122143628 18 : 76,640,545 2KB_upstream_variant, upstream_transcript_variant LINC01927 Yes
21 rs2122143531 18 : 76,640,415 2KB_upstream_variant, upstream_transcript_variant LINC01927 Yes
22 rs2122143514 18 : 76,640,391 2KB_upstream_variant, upstream_transcript_variant LINC01927 n/a
23 rs2122143451 18 : 76,640,345 2KB_upstream_variant, upstream_transcript_variant LINC01927 Yes
24 rs2122143300 18 : 76,640,220 2KB_upstream_variant, upstream_transcript_variant LINC01927 Yes
25 rs2122143250 18 : 76,640,194 2KB_upstream_variant, upstream_transcript_variant LINC01927 n/a
26 rs2122143125 18 : 76,640,106 2KB_upstream_variant, upstream_transcript_variant LINC01927 n/a
27 rs2122143007 18 : 76,639,964 2KB_upstream_variant, upstream_transcript_variant LINC01927 n/a
28 rs2122142984 18 : 76,639,945 2KB_upstream_variant, upstream_transcript_variant LINC01927 n/a
29 rs2122142874 18 : 76,639,781 2KB_upstream_variant, upstream_transcript_variant LINC01927 Yes
30 rs2122142804 18 : 76,639,728 2KB_upstream_variant, upstream_transcript_variant LINC01927 Yes
31 rs2122142573 18 : 76,639,470 2KB_upstream_variant, upstream_transcript_variant LINC01927 Yes
32 rs2122142528 18 : 76,639,429 2KB_upstream_variant, upstream_transcript_variant LINC01927 n/a
33 rs2122142455 18 : 76,639,389 2KB_upstream_variant, upstream_transcript_variant LINC01927 Yes
34 rs2122142422 18 : 76,639,368 2KB_upstream_variant, upstream_transcript_variant LINC01927 Yes
35 rs2122142198 18 : 76,639,179 2KB_upstream_variant, upstream_transcript_variant LINC01927 n/a
36 rs2122142009 18 : 76,638,994 non_coding_transcript_variant LINC01927 n/a
37 rs2122142000 18 : 76,638,986 non_coding_transcript_variant LINC01927 Yes
38 rs2122141817 18 : 76,638,792 non_coding_transcript_variant LINC01927 Yes
39 rs2122141776 18 : 76,638,734 intron_variant LINC01927 n/a
40 rs2122141700 18 : 76,638,663 non_coding_transcript_variant LINC01927 n/a
41 rs2122141641 18 : 76,638,611 non_coding_transcript_variant LINC01927 n/a
42 rs2122141471 18 : 76,638,430 intron_variant LINC01927 n/a
43 rs2122141438 18 : 76,638,386 intron_variant LINC01927 n/a
44 rs2122141338 18 : 76,638,309 intron_variant LINC01927 n/a
45 rs2122141326 18 : 76,638,292 intron_variant LINC01927 Yes
46 rs2122141262 18 : 76,638,241 non_coding_transcript_variant LINC01927 n/a
47 rs2122141227 18 : 76,638,192 intron_variant LINC01927 n/a
48 rs2122141195 18 : 76,638,149 intron_variant LINC01927 Yes
49 rs2122141121 18 : 76,638,091 intron_variant LINC01927 Yes
50 rs2122141035 18 : 76,638,033 intron_variant LINC01927 n/a
{ "section": "SNP", "summary": "1 - 50 of 6935", "genes": [], "retstart": 0, "pageSize": 50, "count": 6935, "SEQ": { "chr": [ ], "markers": { }, "unmapped": [ ] } }

Get information.eQTL Data

gap572635.kquees.asia80gapphegenihttps://572635.kquees.asia/gaphttps://572635.kquees.asiahttps://572635.kquees.asia/gap/phegeni/gaphttps://572635.kquees.asia/gap/phegeni/phegenitrueCE890C027693DC51_2371SID/projects/dbGap/Epiview/EpiView@4.17offeQTLTable_LeQTLTable_Lgapgap150101927651 GA1.1.677473730.1734950334GS1.1.1734950334.1.0.1734950334.0.0.0GS1.1.1734950334.1.0.1734950334.0.0.0N4IgDgTgpgbg mAFgSwCYgFwgMIFEAcAnAAzbEBMA7AGz64BiAggKwCMxHnnhALAMzFKucgDoAtnGogAvkA=
1 - 7 of 7 Modify Search
Study
Result count
External references
ID
Name
cis
trans
Markers
Probes
Subjects
PubMed ID
Ind. genotypes
Mol. phenotypes
40FHS_eQTL01458751562228122634phs000342phs000363
57GTEx_Brain_Frontal_Cortex_BA9101111523715323phs000424.v6phs000424.v6
60GTEx_Brain_Nucleus_accumbens_basal_ganglia101112423715323phs000424.v6phs000424.v6
73GTEx_Lung101133823715323phs000424.v6phs000424.v6
76GTEx_Ovary101110923715323phs000424.v6phs000424.v6
79GTEx_Prostate101112023715323phs000424.v6phs000424.v6
85GTEx_Testis303319923715323phs000424.v6phs000424.v6
{ "section": "eqtl", "summary": "1 - 7 of 7"}

Get information.dbGaP Studies

1 - 23 of 23Download Modify Search
#
Disease
Study Type
Study Name
Participants
Platform
1 Aging
Neoplasms
Arthritis
Lung Diseases, Obstructive
Dementia
Heart Diseases
Heart Failure
Hypertension
Myocardial Infarction
Diabetes Mellitus
Hypercholesterolemia
Obesity
Body Weight
Mobility Limitation
Pain
Cholesterol
Hemoglobin A, Glycosylated
C-Reactive Protein
Cystatin C
Depression
Alcohol Drinking
Smoking
Personality
Life Style
Cognition
Demography
Ethnic Groups
Health Status
Population Groups
Housing
Independent Living
Socioeconomic Factors
Career Mobility
Educational Status
Employment
Family Characteristics
Income
Occupations
Poverty
Social Change
Social Class
Social Conditions
Risk Factors
Aging
Longitudinal Health and Retirement Study (HRS) 15620 Illumina: HumanOmni2.5
2 Coronary Disease
Hypertension
Diabetes Mellitus
Heart Failure
Coronary Disease
Longitudinal CATHeterization GENetics (CATHGEN) 3304
3 Pharmacogenetics
Atrial Fibrillation
Attention Deficit Disorder with Hyperactivity
Cardiovascular Diseases
Epilepsy
Heart Failure
Hypertension
Malignant Hyperthermia
Long QT Syndrome
Atomoxetine
Clopidogrel
Methylphenidate
Simvastatin
Warfarin
Hydroxymethylglutaryl-CoA Reductase Inhibitors
Pharmacogenetics
Cohort eMERGE Network PGx Cohort 9010 Illumina: HiSeq 2000
Illumina: HiSeq 2500
4 Hypercholesterolemia
Asthma
Arthritis, Rheumatoid
Attention Deficit Disorder with Hyperactivity
Bipolar Disorder
Coronary Disease
Depression
Heart Failure
Inflammatory Bowel Diseases
Multiple Sclerosis
Schizophrenia
Stroke
Hypercholesterolemia
Cross-Sectional eMERGE Clinical Center at Partners HealthCare 4929 Illumina: Infinium Multi-Ethnic Genotyping Array (MEGA) - Consortium Release .v1
5 Women's Health
Adrenal Gland Neoplasms
Angina Pectoris
Angioplasty, Transluminal, Percutaneous Coronary
Anus Neoplasms
Appendiceal Neoplasms
Arthritis, Rheumatoid
Biliary Tract Neoplasms
Bone Neoplasms
Brain Neoplasms
Breast Neoplasms
Carotid Artery Diseases
Cataract
Central Nervous System Cysts
Colorectal Neoplasms
Coronary Artery Bypass
Coronary Disease
Death
Diabetes Mellitus
Endocrine Gland Neoplasms
Esophageal Neoplasms
Eye Neoplasms
Fractures, Bone
Gallbladder Diseases
Glaucoma
Heart Failure
Hip Fractures
Hodgkin Disease
Humeral Fractures
Hypertension
Hysterectomy
Intestinal Polyps
Kidney Calculi
Kidney Neoplasms
Laryngeal Neoplasms
Leukemia
Liver Neoplasms
Lung Neoplasms
Lupus Erythematosus, Cutaneous
Lymph Nodes
Lymphoma, Non-Hodgkin
Melanoma
Meningeal Neoplasms
Mouth Neoplasms
Multiple Myeloma
Myocardial Infarction
Neoplasms, Connective and Soft Tissue
Osteoporosis, Postmenopausal
Palatal Neoplasms
Pancreatic Neoplasms
Paranasal Sinus Neoplasms
Parotid Neoplasms
Peripheral Nervous System Neoplasms
Peripheral Vascular Diseases
Radius Fractures
Respiratory Tract Neoplasms
Salivary Gland Neoplasms
Spinal Cord Neoplasms
Spinal Fractures
Stomach Neoplasms
Stroke
Thyroid Neoplasms
Tibial Fractures
Tongue Neoplasms
Ulna Fractures
Ureteral Neoplasms
Urethral Neoplasms
Urinary Bladder Neoplasms
Urogenital Neoplasms
Uterine Cervical Neoplasms
Uterine Neoplasms
Women's Health
Partial Factorial Randomized, Double-Blind, Placebo-Controlled, Cohort, Longitudinal Women's Health Initiative 143213
6 Memory
Adrenal Gland Neoplasms
Angina Pectoris
Angioplasty, Transluminal, Percutaneous Coronary
Anus Neoplasms
Appendiceal Neoplasms
Arthritis, Rheumatoid
Biliary Tract Neoplasms
Bone Neoplasms
Brain Neoplasms
Breast Neoplasms
Carotid Artery Diseases
Cataract
Central Nervous System Cysts
Colorectal Neoplasms
Coronary Artery Bypass
Coronary Disease
Diabetes Mellitus
Endocrine Gland Neoplasms
Esophageal Neoplasms
Eye Neoplasms
Fractures, Bone
Gallbladder Diseases
Glaucoma
Heart Failure
Hip Fractures
Hodgkin Disease
Humeral Fractures
Hypertension
Hysterectomy
Intestinal Polyps
Kidney Calculi
Kidney Neoplasms
Laryngeal Neoplasms
Leukemia
Liver Neoplasms
Lung Neoplasms
Lupus Erythematosus, Cutaneous
Lymph Nodes
Lymphoma, Non-Hodgkin
Melanoma
Meningeal Neoplasms
Mouth Neoplasms
Multiple Myeloma
Myocardial Infarction
Neoplasms, Connective and Soft Tissue
Osteoporosis, Postmenopausal
Palatal Neoplasms
Pancreatic Neoplasms
Paranasal Sinus Neoplasms
Parotid Neoplasms
Peripheral Nervous System Neoplasms
Peripheral Vascular Diseases
Radius Fractures
Respiratory Tract Neoplasms
Salivary Gland Neoplasms
Spinal Cord Neoplasms
Spinal Fractures
Stomach Neoplasms
Stroke
Thyroid Neoplasms
Tibial Fractures
Tongue Neoplasms
Ulna Fractures
Ureteral Neoplasms
Urethral Neoplasms
Urinary Bladder Neoplasms
Urogenital Neoplasms
Uterine Cervical Neoplasms
Uterine Neoplasms
Memory
Cohort WHIMS+ GWAS: GWAS on Selected WHI Hormone Trial European Americans 5740 Illumina: HumanOmniExpress
7 Women's Health
Adrenal Gland Neoplasms
Angina Pectoris
Angioplasty, Transluminal, Percutaneous Coronary
Anus Neoplasms
Appendiceal Neoplasms
Arthritis, Rheumatoid
Biliary Tract Neoplasms
Bone Neoplasms
Brain Neoplasms
Breast Neoplasms
Carotid Artery Diseases
Cataract
Central Nervous System Cysts
Colorectal Neoplasms
Coronary Artery Bypass
Coronary Disease
Death
Diabetes Mellitus
Endocrine Gland Neoplasms
Esophageal Neoplasms
Eye Neoplasms
Fractures, Bone
Gallbladder Diseases
Glaucoma
Heart Failure
Hip Fractures
Hodgkin Disease
Humeral Fractures
Hypertension
Hysterectomy
Intestinal Polyps
Kidney Calculi
Kidney Neoplasms
Laryngeal Neoplasms
Leukemia
Liver Neoplasms
Lung Neoplasms
Lupus Erythematosus, Cutaneous
Lymph Nodes
Lymphoma, Non-Hodgkin
Melanoma
Meningeal Neoplasms
Mouth Neoplasms
Multiple Myeloma
Myocardial Infarction
Neoplasms, Connective and Soft Tissue
Osteoporosis, Postmenopausal
Palatal Neoplasms
Pancreatic Neoplasms
Paranasal Sinus Neoplasms
Parotid Neoplasms
Peripheral Nervous System Neoplasms
Peripheral Vascular Diseases
Radius Fractures
Respiratory Tract Neoplasms
Salivary Gland Neoplasms
Spinal Cord Neoplasms
Spinal Fractures
Stomach Neoplasms
Stroke
Thyroid Neoplasms
Tibial Fractures
Tongue Neoplasms
Ulna Fractures
Ureteral Neoplasms
Urethral Neoplasms
Urinary Bladder Neoplasms
Urogenital Neoplasms
Uterine Cervical Neoplasms
Uterine Neoplasms
Women's Health
Cohort WHI Long Life Study Phase III GWAS Data 1446 Illumina: HumanOmniExpressExome-8v1_A
{ "section": "GAP", "summary": "1 - 23 of 23", "retstart": 0, "pageSize": 50, "count": 23 }
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