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Genotype Selection - Genes

100499483
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Association Results No data found. Searched by gene IDs retrieved from gene search.
Genes 1 - 1 of 1 Searched by gene names and/or gene IDs.
SNPs 1 - 50 of 26853 Searched by gene symbols retrieved from gene search.
eQTL Data 1 - 45 of 45 Searched by gene IDs retrieved from gene search.
dbGaP Studies No data found.Searched by traits retrieved from page 1 of association results.
Genome View 1 gene over 1 chromosome.
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Select broad trait category to limit the items shown in the trait selection.
Select trait for search.  Selection of a trait will limit the trait categories shown above.
Data shown are selected columns matching search criteria, taken directly from NCBI’s GTEx database and browser.  This database aims to provide a central resource to archive and display associations between genetic variation and high-throughput molecular-level phenotypes.  This effort originated with the NIH GTEx roadmap project; however the scope of this resource will be extended to include any available genotype/molecular phenotype datasets.

Get information.Genes

#
Symbol
Description
Location
OMIM
CCDC180coiled-coil domain containing 180 9 : 97,307,337 - 97,378,751
{ "section": "GENE", "summary": "1 - 1 of 1", "retstart": 0, "pageSize": 100, "count": 1, "SEQ": { "chr": [ ["9", 97307337, 97378751] ], "markers": { "9": [ ["CCDC180", "NC_000009.12", 97307337, 97378751, "coiled-coil domain containing 180", "C9orf174, CFAP76, FAP76", 100499483] ] }, "unmapped": [ ] } }

Get information.Genome View

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Summary
1 gene searched by gene names and/or gene IDs over 1 chromosome.
SNPGeneCountLocation bps
SNP symbolGene symbol1 SNP or geneLocation symbolless than 2M bps
SNP symbolGene symbol2 - 10 SNPs or genesLocation symbolat least 2M bps
SNP symbolGene symbol11 - 20 SNPs or genes 
SNP symbolGene symbolmore than 20 SNPs or genes
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Get information.Association Results

No association data found.
Modify Search { "section": "assoc", "summary": "No data found.", "mesh": [ ], "genes": [], "snps": [], "page": 1, "call": "BuildGaP", "pageSize": 50, "recCount": 0 }

Get information.SNPs

1 - 50 of 26853 < Previous Next >  Page  GoDownload Modify Search
#
rs#
Location
Function Class
Gene
Diversity
1 rs2118861029 9 : 97,359,880 genic_downstream_transcript_variant, intron_variant SUGT1P4-STRA6LP-CCDC180, CCDC180 n/a
2 rs2118860886 9 : 97,359,857 genic_downstream_transcript_variant, intron_variant SUGT1P4-STRA6LP-CCDC180, CCDC180 Yes
3 rs2118860779 9 : 97,359,841 genic_downstream_transcript_variant, intron_variant SUGT1P4-STRA6LP-CCDC180, CCDC180 n/a
4 rs2118860595 9 : 97,359,801 genic_downstream_transcript_variant, intron_variant SUGT1P4-STRA6LP-CCDC180, CCDC180 n/a
5 rs2118859346 9 : 97,359,515 genic_downstream_transcript_variant, intron_variant SUGT1P4-STRA6LP-CCDC180, CCDC180 n/a
6 rs2118859307 9 : 97,359,507 genic_downstream_transcript_variant, intron_variant SUGT1P4-STRA6LP-CCDC180, CCDC180 n/a
7 rs2118859245 9 : 97,359,487 genic_downstream_transcript_variant, intron_variant SUGT1P4-STRA6LP-CCDC180, CCDC180 n/a
8 rs2118859161 9 : 97,359,463 genic_downstream_transcript_variant, intron_variant SUGT1P4-STRA6LP-CCDC180, CCDC180 n/a
9 rs2118859054 9 : 97,359,445 genic_downstream_transcript_variant, intron_variant SUGT1P4-STRA6LP-CCDC180, CCDC180 n/a
10 rs2118858818 9 : 97,359,413 genic_downstream_transcript_variant, intron_variant SUGT1P4-STRA6LP-CCDC180, CCDC180 n/a
11 rs2118858789 9 : 97,359,405 genic_downstream_transcript_variant, intron_variant SUGT1P4-STRA6LP-CCDC180, CCDC180 n/a
12 rs2118858470 9 : 97,359,348 genic_downstream_transcript_variant, intron_variant SUGT1P4-STRA6LP-CCDC180, CCDC180 n/a
13 rs2118858083 9 : 97,359,276 genic_downstream_transcript_variant, intron_variant SUGT1P4-STRA6LP-CCDC180, CCDC180 Yes
14 rs2118857994 9 : 97,359,261 genic_downstream_transcript_variant, intron_variant SUGT1P4-STRA6LP-CCDC180, CCDC180 Yes
15 rs2118857674 9 : 97,359,200 genic_downstream_transcript_variant, intron_variant SUGT1P4-STRA6LP-CCDC180, CCDC180 Yes
16 rs2118857277 9 : 97,359,101 genic_downstream_transcript_variant, intron_variant SUGT1P4-STRA6LP-CCDC180, CCDC180 n/a
17 rs2118857212 9 : 97,359,091 genic_downstream_transcript_variant, intron_variant SUGT1P4-STRA6LP-CCDC180, CCDC180 n/a
18 rs2118857076 9 : 97,359,054 genic_downstream_transcript_variant, intron_variant SUGT1P4-STRA6LP-CCDC180, CCDC180 Yes
19 rs2118856952 9 : 97,359,031 genic_downstream_transcript_variant, intron_variant SUGT1P4-STRA6LP-CCDC180, CCDC180 Yes
20 rs2118856789 9 : 97,358,976 genic_downstream_transcript_variant, intron_variant SUGT1P4-STRA6LP-CCDC180, CCDC180 n/a
21 rs2118856741 9 : 97,358,961 genic_downstream_transcript_variant, intron_variant SUGT1P4-STRA6LP-CCDC180, CCDC180 Yes
22 rs2118856392 9 : 97,358,863 genic_downstream_transcript_variant, intron_variant SUGT1P4-STRA6LP-CCDC180, CCDC180 n/a
23 rs2118856347 9 : 97,358,856 genic_downstream_transcript_variant, intron_variant SUGT1P4-STRA6LP-CCDC180, CCDC180 Yes
24 rs2118855593 9 : 97,358,698 genic_downstream_transcript_variant, intron_variant SUGT1P4-STRA6LP-CCDC180, CCDC180 Yes
25 rs2118855095 9 : 97,358,557 genic_downstream_transcript_variant, intron_variant SUGT1P4-STRA6LP-CCDC180, CCDC180 n/a
26 rs2118854994 9 : 97,358,532 genic_downstream_transcript_variant, intron_variant SUGT1P4-STRA6LP-CCDC180, CCDC180 n/a
27 rs2118854741 9 : 97,358,489 genic_downstream_transcript_variant, intron_variant SUGT1P4-STRA6LP-CCDC180, CCDC180 n/a
28 rs2118854246 9 : 97,358,370 genic_downstream_transcript_variant, intron_variant SUGT1P4-STRA6LP-CCDC180, CCDC180 Yes
29 rs2118854166 9 : 97,358,363 genic_downstream_transcript_variant, intron_variant SUGT1P4-STRA6LP-CCDC180, CCDC180 Yes
30 rs2118854048 9 : 97,358,342 genic_downstream_transcript_variant, intron_variant SUGT1P4-STRA6LP-CCDC180, CCDC180 Yes
31 rs2118853784 9 : 97,358,278 genic_downstream_transcript_variant, intron_variant SUGT1P4-STRA6LP-CCDC180, CCDC180 n/a
32 rs2118853687 9 : 97,358,246 genic_downstream_transcript_variant, intron_variant SUGT1P4-STRA6LP-CCDC180, CCDC180 n/a
33 rs2118853613 9 : 97,358,228 genic_downstream_transcript_variant, intron_variant SUGT1P4-STRA6LP-CCDC180, CCDC180 n/a
34 rs2118853288 9 : 97,358,155 genic_downstream_transcript_variant, intron_variant SUGT1P4-STRA6LP-CCDC180, CCDC180 Yes
35 rs2118853163 9 : 97,358,140 genic_downstream_transcript_variant, intron_variant SUGT1P4-STRA6LP-CCDC180, CCDC180 Yes
36 rs2118853120 9 : 97,358,139 genic_downstream_transcript_variant, intron_variant SUGT1P4-STRA6LP-CCDC180, CCDC180 Yes
37 rs2118852738 9 : 97,358,088 genic_downstream_transcript_variant, intron_variant SUGT1P4-STRA6LP-CCDC180, CCDC180 Yes
38 rs2118852640 9 : 97,358,081 genic_downstream_transcript_variant, intron_variant SUGT1P4-STRA6LP-CCDC180, CCDC180 Yes
39 rs2118852492 9 : 97,358,044 genic_downstream_transcript_variant, intron_variant SUGT1P4-STRA6LP-CCDC180, CCDC180 n/a
40 rs2118852455 9 : 97,358,037 genic_downstream_transcript_variant, intron_variant SUGT1P4-STRA6LP-CCDC180, CCDC180 Yes
41 rs2118852408 9 : 97,358,033 genic_downstream_transcript_variant, intron_variant SUGT1P4-STRA6LP-CCDC180, CCDC180 n/a
42 rs2118852394 9 : 97,358,033 genic_downstream_transcript_variant, intron_variant SUGT1P4-STRA6LP-CCDC180, CCDC180 Yes
43 rs2118851826 9 : 97,357,939 genic_downstream_transcript_variant, intron_variant SUGT1P4-STRA6LP-CCDC180, CCDC180 n/a
44 rs2118851276 9 : 97,357,802 genic_downstream_transcript_variant, intron_variant SUGT1P4-STRA6LP-CCDC180, CCDC180 n/a
45 rs2118850970 9 : 97,357,767 genic_downstream_transcript_variant, intron_variant SUGT1P4-STRA6LP-CCDC180, CCDC180 n/a
46 rs2118850252 9 : 97,357,596 genic_downstream_transcript_variant, intron_variant SUGT1P4-STRA6LP-CCDC180, CCDC180 n/a
47 rs2118849768 9 : 97,357,459 genic_downstream_transcript_variant, intron_variant SUGT1P4-STRA6LP-CCDC180, CCDC180 n/a
48 rs2118849210 9 : 97,357,308 genic_downstream_transcript_variant, intron_variant SUGT1P4-STRA6LP-CCDC180, CCDC180 Yes
49 rs2118848357 9 : 97,357,105 genic_downstream_transcript_variant, intron_variant SUGT1P4-STRA6LP-CCDC180, CCDC180 n/a
50 rs2118848121 9 : 97,357,017 genic_downstream_transcript_variant, intron_variant SUGT1P4-STRA6LP-CCDC180, CCDC180 n/a
{ "section": "SNP", "summary": "1 - 50 of 26853", "genes": [], "retstart": 0, "pageSize": 50, "count": 26853, "SEQ": { "chr": [ ], "markers": { }, "unmapped": [ ] } }

Get information.eQTL Data

gap572635.kquees.asia80gapphegenihttps://572635.kquees.asia/gaphttps://572635.kquees.asiahttps://572635.kquees.asia/gap/phegeni/gaphttps://572635.kquees.asia/gap/phegeni/phegenitrueCE89BFAC77963661_1574SID/projects/dbGap/Epiview/EpiView@4.17offeQTLTable_LeQTLTable_Lgapgap150100499483 GA1.1.1236250418.1736008543GS1.1.1736008543.1.0.1736008543.0.0.0GS1.1.1736008542.1.0.1736008542.0.0.0N4IgDgTgpgbg mAFgSwCYgFwgMIFEAcAnAEIBiAgtgOxWEBMALMQCICMADJ11wGx0/sArIWYA6ALZweIAL5A
1 - 45 of 45 Modify Search
Study
Result count
External references
ID
Name
cis
trans
Markers
Probes
Subjects
PubMed ID
Ind. genotypes
Mol. phenotypes
40FHS_eQTL51976134562228122634phs000342phs000363
46GTEx_Adipose_Subcutaneous101137023715323phs000424.v6phs000424.v6
47GTEx_Adipose_Visceral_Omentum202223423715323phs000424.v6phs000424.v6
48GTEx_Adrenal_Gland101115923715323phs000424.v6phs000424.v6
49GTEx_Artery_Aorta202224723715323phs000424.v6phs000424.v6
50GTEx_Artery_Coronary101114123715323phs000424.v6phs000424.v6
51GTEx_Artery_Tibial101136023715323phs000424.v6phs000424.v6
52GTEx_Brain_Anterior_cingulate_cortex_BA2410119723715323phs000424.v6phs000424.v6
53GTEx_Brain_Caudate_basal_ganglia101113323715323phs000424.v6phs000424.v6
54GTEx_Brain_Cerebellar_Hemisphere101111423715323phs000424.v6phs000424.v6
55GTEx_Brain_Cerebellum101113823715323phs000424.v6phs000424.v6
56GTEx_Brain_Cortex202212723715323phs000424.v6phs000424.v6
57GTEx_Brain_Frontal_Cortex_BA9101111523715323phs000424.v6phs000424.v6
58GTEx_Brain_Hippocampus101110223715323phs000424.v6phs000424.v6
59GTEx_Brain_Hypothalamus202210323715323phs000424.v6phs000424.v6
60GTEx_Brain_Nucleus_accumbens_basal_ganglia303312423715323phs000424.v6phs000424.v6
61GTEx_Brain_Putamen_basal_ganglia101110323715323phs000424.v6phs000424.v6
62GTEx_Breast_Mammary_Tissue101121923715323phs000424.v6phs000424.v6
63GTEx_Cells_EBV-transformed_lymphocytes101113223715323phs000424.v6phs000424.v6
64GTEx_Cells_Transformed_fibroblasts202230523715323phs000424.v6phs000424.v6
65GTEx_Colon_Sigmoid101117323715323phs000424.v6phs000424.v6
66GTEx_Colon_Transverse202220723715323phs000424.v6phs000424.v6
67GTEx_Esophagus_Gastroesophageal_Junction101117523715323phs000424.v6phs000424.v6
68GTEx_Esophagus_Mucosa101132923715323phs000424.v6phs000424.v6
69GTEx_Esophagus_Muscularis101128123715323phs000424.v6phs000424.v6
70GTEx_Heart_Atrial_Appendage101121723715323phs000424.v6phs000424.v6
71GTEx_Heart_Left_Ventricle101124823715323phs000424.v6phs000424.v6
72GTEx_Liver101113823715323phs000424.v6phs000424.v6
73GTEx_Lung101133823715323phs000424.v6phs000424.v6
74GTEx_Muscle_Skeletal101145423715323phs000424.v6phs000424.v6
75GTEx_Nerve_Tibial101133323715323phs000424.v6phs000424.v6
76GTEx_Ovary202210923715323phs000424.v6phs000424.v6
77GTEx_Pancreas101119423715323phs000424.v6phs000424.v6
78GTEx_Pituitary202212423715323phs000424.v6phs000424.v6
79GTEx_Prostate101112023715323phs000424.v6phs000424.v6
80GTEx_Skin_Not_Sun_Exposed_Suprapubic101126923715323phs000424.v6phs000424.v6
81GTEx_Skin_Sun_Exposed_Lower_leg101138823715323phs000424.v6phs000424.v6
82GTEx_Small_Intestine_Terminal_Ileum101110523715323phs000424.v6phs000424.v6
83GTEx_Spleen101111923715323phs000424.v6phs000424.v6
84GTEx_Stomach101120223715323phs000424.v6phs000424.v6
85GTEx_Testis101119923715323phs000424.v6phs000424.v6
86GTEx_Thyroid101134723715323phs000424.v6phs000424.v6
87GTEx_Uterus10118923715323phs000424.v6phs000424.v6
88GTEx_Vagina10119823715323phs000424.v6phs000424.v6
89GTEx_Whole_Blood101143023715323phs000424.v6phs000424.v6
{ "section": "eqtl", "summary": "1 - 45 of 45"}

Get information.dbGaP Studies

No dbGaP study data found.
Modify Search { "section": "GAP", "summary": "No data found.", "retstart": 0, "pageSize": 50, "count": "" }
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