nsv7098871
- Organism: Homo sapiens
- Study:nstd102 (Clinical Structural Variants)
- Variant Type:copy number variation
- Method Type:Multiple
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:1,392,375
- Description:GRCh37/hg19 Xp22.31(chrX:6451786-7894160)x0 AND not provided
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 2949 SVs from 82 studies. See in: genome view
Overlapping variant regions from other studies: 2958 SVs from 82 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv7098871 | Remapped | Good | GRCh38.p12 | Primary Assembly | First Pass | NC_000023.11 | ChrX | 6,533,745 | 7,926,119 |
| nsv7098871 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000023.10 | ChrX | 6,451,786 | 7,894,160 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv18792770 | copy number loss | Multiple | Multiple | not provided | Pathogenic | ClinVar | RCV003221460.2, VCV002499159.3 | 0 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv18792770 | Remapped | Good | NC_000023.11:g.(?_ 6533745)_(7926119_ ?)del | GRCh38.p12 | First Pass | NC_000023.11 | ChrX | 6,533,745 | 7,926,119 |
| nssv18792770 | Submitted genomic | NC_000023.10:g.(?_ 6451786)_(7894160_ ?)del | GRCh37 (hg19) | NC_000023.10 | ChrX | 6,451,786 | 7,894,160 |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv18792770 | GRCh37: NC_000023.10:g.(?_6451786)_(7894160_?)del | copy number loss | germline | not provided | Pathogenic | ClinVar | RCV003221460.2, VCV002499159.3 | 0 |