nsv7038148
- Organism: Homo sapiens
- Study:nstd229 (Jun et al. 2023)
- Variant Type:inversion
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:504,842
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1016 SVs from 67 studies. See in: genome view
Overlapping variant regions from other studies: 1000 SVs from 67 studies. See in: genome view
Overlapping variant regions from other studies: 275 SVs from 33 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv7038148 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000023.11 | ChrX | 154,664,520 | 155,169,361 | ||
| nsv7038148 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | Second Pass | NC_000023.10 | ChrX | 153,892,794 | 154,397,636 |
| nsv7038148 | Remapped | Perfect | GRCh37.p13 | PATCHES | First Pass | NW_003871103.3 | ChrX|NW_00 3871103.3 | 2,098,499 | 2,603,340 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv18766155 | inversion | Sequencing | Split read and paired-end mapping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv18766155 | Submitted genomic | NC_000023.11:g.154 664520_155169361in v | GRCh38 (hg38) | NC_000023.11 | ChrX | 154,664,520 | 155,169,361 | ||
| nssv18766155 | Remapped | Perfect | NW_003871103.3:g.2 098499_2603340inv | GRCh37.p13 | First Pass | NW_003871103.3 | ChrX|NW_00 3871103.3 | 2,098,499 | 2,603,340 |
| nssv18766155 | Remapped | Perfect | NC_000023.10:g.153 892794_154397636in v | GRCh37.p13 | Second Pass | NC_000023.10 | ChrX | 153,892,794 | 154,397,636 |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.
Genotype Information
| Variant Call ID | Allele Frequency (AF) | Allele Count (AC) | Allele Number (AN) |
|---|---|---|---|
| nssv18766155 | 5e-06 | 1 | 200000 |