nsv7015656
- Organism: Homo sapiens
- Study:nstd229 (Jun et al. 2023)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:13,400
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 257 SVs from 45 studies. See in: genome view
Overlapping variant regions from other studies: 255 SVs from 44 studies. See in: genome view
Overlapping variant regions from other studies: 131 SVs from 26 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv7015656 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000019.10 | Chr19 | 20,199,459 | 20,212,858 | ||
| nsv7015656 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | Second Pass | NC_000019.9 | Chr19 | 20,310,268 | 20,323,667 |
| nsv7015656 | Remapped | Perfect | GRCh37.p13 | PATCHES | First Pass | NW_003571053.2 | Chr19|NW_0 03571053.2 | 116,712 | 130,111 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv18637268 | duplication | Sequencing | Split read and paired-end mapping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv18637268 | Submitted genomic | NC_000019.10:g.201 99459_20212858dup | GRCh38 (hg38) | NC_000019.10 | Chr19 | 20,199,459 | 20,212,858 | ||
| nssv18637268 | Remapped | Perfect | NW_003571053.2:g.1 16712_130111dup | GRCh37.p13 | First Pass | NW_003571053.2 | Chr19|NW_0 03571053.2 | 116,712 | 130,111 |
| nssv18637268 | Remapped | Perfect | NC_000019.9:g.2031 0268_20323667dup | GRCh37.p13 | Second Pass | NC_000019.9 | Chr19 | 20,310,268 | 20,323,667 |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.
Genotype Information
| Variant Call ID | Allele Frequency (AF) | Allele Count (AC) | Allele Number (AN) |
|---|---|---|---|
| nssv18637268 | 4e-06 | 1 | 276022 |