nsv6634094
- Organism: Homo sapiens
- Study:nstd224 (Zarrei et al. 2023)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:GRCh37
- Variant Calls:4
- Validation:Not tested
- Clinical Assertions: No
- Region Size:57,207,415
- Publication(s):Zarrei et al. 2023
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 18534 SVs from 69 studies. See in: genome view
Overlapping variant regions from other studies: 18560 SVs from 75 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv6634094 | Remapped | Good | GRCh38.p12 | Primary Assembly | First Pass | NC_000024.10 | ChrY | 10,001 | 57,217,415 |
| nsv6634094 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000024.9 | ChrY | 1 | 59,373,566 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv18287126 | duplication | OSC3142 | SNP array | Probe signal intensity | 6 |
| nssv18292044 | duplication | OSC4002 | SNP array | Probe signal intensity | nssv18292736, nssv18292397, nssv18292738 |
| nssv18296021 | duplication | OSC4643 | SNP array | Probe signal intensity | 7 |
| nssv18322792 | duplication | OSC1428 | SNP array | Probe signal intensity | 11 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv18287126 | Remapped | Good | NC_000024.10:g.(?_ 10001)_(57217415_? )dup | GRCh38.p12 | First Pass | NC_000024.10 | ChrY | 10,001 | 57,217,415 |
| nssv18292044 | Remapped | Good | NC_000024.10:g.(?_ 10001)_(57217415_? )dup | GRCh38.p12 | First Pass | NC_000024.10 | ChrY | 10,001 | 57,217,415 |
| nssv18296021 | Remapped | Good | NC_000024.10:g.(?_ 10001)_(57217415_? )dup | GRCh38.p12 | First Pass | NC_000024.10 | ChrY | 10,001 | 57,217,415 |
| nssv18322792 | Remapped | Good | NC_000024.10:g.(?_ 10001)_(57217415_? )dup | GRCh38.p12 | First Pass | NC_000024.10 | ChrY | 10,001 | 57,217,415 |
| nssv18287126 | Submitted genomic | NC_000024.9:g.(?_1 )_(59373566_?)dup | GRCh37 (hg19) | NC_000024.9 | ChrY | 1 | 59,373,566 | ||
| nssv18292044 | Submitted genomic | NC_000024.9:g.(?_1 )_(59373566_?)dup | GRCh37 (hg19) | NC_000024.9 | ChrY | 1 | 59,373,566 | ||
| nssv18296021 | Submitted genomic | NC_000024.9:g.(?_1 )_(59373566_?)dup | GRCh37 (hg19) | NC_000024.9 | ChrY | 1 | 59,373,566 | ||
| nssv18322792 | Submitted genomic | NC_000024.9:g.(?_1 )_(59373566_?)dup | GRCh37 (hg19) | NC_000024.9 | ChrY | 1 | 59,373,566 |