nsv6630883

Organism: Homo sapiens

Study:nstd224 (Zarrei et al. 2023)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37

Variant Calls:34
Validation:Not tested
Clinical Assertions: No
Region Size:38,963

Publication(s):Zarrei et al. 2023

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1653 SVs from 94 studies. See in: genome view

Remapped(Score: Perfect):777,018-815,980

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv6630883	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000005.10	Chr5	777,018	815,980
nsv6630883	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000005.9	Chr5	777,133	816,095

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv18303464	duplication	OSC6040	SNP array	Probe signal intensity	7
nssv18303536	duplication	OSC5900	SNP array	Probe signal intensity	11
nssv18304454	duplication	OSC6087	SNP array	Probe signal intensity	9
nssv18304464	duplication	OSC6101	SNP array	Probe signal intensity	6
nssv18304505	duplication	OSC6145	SNP array	Probe signal intensity	8
nssv18304663	deletion	OSC6236	SNP array	Probe signal intensity	12
nssv18304758	duplication	OSC6109	SNP array	Probe signal intensity	7
nssv18305475	duplication	OSC6422	SNP array	Probe signal intensity	5
nssv18305976	deletion	OSC6310	SNP array	Probe signal intensity	nssv18305082, nssv18305679, nssv18305680
nssv18308397	deletion	OSC6922	SNP array	Probe signal intensity	8
nssv18308605	duplication	OSC6857	SNP array	Probe signal intensity	9
nssv18309430	duplication	OSC7008	SNP array	Probe signal intensity	11
nssv18309594	duplication	OSC7105	SNP array	Probe signal intensity	12
nssv18310023	deletion	OSC7126	SNP array	Probe signal intensity	7
nssv18310362	duplication	OSC7206	SNP array	Probe signal intensity	7
nssv18310438	duplication	OSC7254	SNP array	Probe signal intensity	9
nssv18310575	duplication	OSC7135	SNP array	Probe signal intensity	9
nssv18310796	duplication	OSC7288	SNP array	Probe signal intensity	10
nssv18311732	deletion	OSC7468	SNP array	Probe signal intensity	9
nssv18311853	duplication	OSC7386	SNP array	Probe signal intensity	17
nssv18312152	duplication	OSC7402	SNP array	Probe signal intensity	10
nssv18313090	duplication	OSC7609	SNP array	Probe signal intensity	6
nssv18313536	duplication	OSC7755	SNP array	Probe signal intensity	6
nssv18313789	deletion	OSC7922	SNP array	Probe signal intensity	11
nssv18314549	duplication	OSC7972	SNP array	Probe signal intensity	9
nssv18314573	duplication	OSC7992	SNP array	Probe signal intensity	7
nssv18315688	duplication	OSC8122	SNP array	Probe signal intensity	10
nssv18316330	deletion	OSC8346	SNP array	Probe signal intensity	12
nssv18316416	deletion	OSC8399	SNP array	Probe signal intensity	12
nssv18316558	deletion	OSC8263	SNP array	Probe signal intensity	8
nssv18317639	duplication	OSC8617	SNP array	Probe signal intensity	10
nssv18319374	deletion	OSC8737	SNP array	Probe signal intensity	7
nssv18319377	duplication	OSC8739	SNP array	Probe signal intensity	8
nssv18319569	duplication	OSC8686	SNP array	Probe signal intensity	nssv18319040, nssv18319568, nssv18319570

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv18303464	Remapped	Perfect	NC_000005.10:g.(?_ 777018)_(815980_?) dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	777,018	815,980
nssv18303536	Remapped	Perfect	NC_000005.10:g.(?_ 777018)_(815980_?) dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	777,018	815,980
nssv18304454	Remapped	Perfect	NC_000005.10:g.(?_ 777018)_(815980_?) dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	777,018	815,980
nssv18304464	Remapped	Perfect	NC_000005.10:g.(?_ 777018)_(815980_?) dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	777,018	815,980
nssv18304505	Remapped	Perfect	NC_000005.10:g.(?_ 777018)_(815980_?) dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	777,018	815,980
nssv18304663	Remapped	Perfect	NC_000005.10:g.(?_ 777018)_(815980_?) del	GRCh38.p12	First Pass	NC_000005.10	Chr5	777,018	815,980
nssv18304758	Remapped	Perfect	NC_000005.10:g.(?_ 777018)_(815980_?) dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	777,018	815,980
nssv18305475	Remapped	Perfect	NC_000005.10:g.(?_ 777018)_(815980_?) dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	777,018	815,980
nssv18305976	Remapped	Perfect	NC_000005.10:g.(?_ 777018)_(815980_?) del	GRCh38.p12	First Pass	NC_000005.10	Chr5	777,018	815,980
nssv18308397	Remapped	Perfect	NC_000005.10:g.(?_ 777018)_(815980_?) del	GRCh38.p12	First Pass	NC_000005.10	Chr5	777,018	815,980
nssv18308605	Remapped	Perfect	NC_000005.10:g.(?_ 777018)_(815980_?) dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	777,018	815,980
nssv18309430	Remapped	Perfect	NC_000005.10:g.(?_ 777018)_(815980_?) dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	777,018	815,980
nssv18309594	Remapped	Perfect	NC_000005.10:g.(?_ 777018)_(815980_?) dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	777,018	815,980
nssv18310023	Remapped	Perfect	NC_000005.10:g.(?_ 777018)_(815980_?) del	GRCh38.p12	First Pass	NC_000005.10	Chr5	777,018	815,980
nssv18310362	Remapped	Perfect	NC_000005.10:g.(?_ 777018)_(815980_?) dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	777,018	815,980
nssv18310438	Remapped	Perfect	NC_000005.10:g.(?_ 777018)_(815980_?) dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	777,018	815,980
nssv18310575	Remapped	Perfect	NC_000005.10:g.(?_ 777018)_(815980_?) dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	777,018	815,980
nssv18310796	Remapped	Perfect	NC_000005.10:g.(?_ 777018)_(815980_?) dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	777,018	815,980
nssv18311732	Remapped	Perfect	NC_000005.10:g.(?_ 777018)_(815980_?) del	GRCh38.p12	First Pass	NC_000005.10	Chr5	777,018	815,980
nssv18311853	Remapped	Perfect	NC_000005.10:g.(?_ 777018)_(815980_?) dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	777,018	815,980
nssv18312152	Remapped	Perfect	NC_000005.10:g.(?_ 777018)_(815980_?) dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	777,018	815,980
nssv18313090	Remapped	Perfect	NC_000005.10:g.(?_ 777018)_(815980_?) dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	777,018	815,980
nssv18313536	Remapped	Perfect	NC_000005.10:g.(?_ 777018)_(815980_?) dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	777,018	815,980
nssv18313789	Remapped	Perfect	NC_000005.10:g.(?_ 777018)_(815980_?) del	GRCh38.p12	First Pass	NC_000005.10	Chr5	777,018	815,980
nssv18314549	Remapped	Perfect	NC_000005.10:g.(?_ 777018)_(815980_?) dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	777,018	815,980
nssv18314573	Remapped	Perfect	NC_000005.10:g.(?_ 777018)_(815980_?) dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	777,018	815,980
nssv18315688	Remapped	Perfect	NC_000005.10:g.(?_ 777018)_(815980_?) dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	777,018	815,980
nssv18316330	Remapped	Perfect	NC_000005.10:g.(?_ 777018)_(815980_?) del	GRCh38.p12	First Pass	NC_000005.10	Chr5	777,018	815,980
nssv18316416	Remapped	Perfect	NC_000005.10:g.(?_ 777018)_(815980_?) del	GRCh38.p12	First Pass	NC_000005.10	Chr5	777,018	815,980
nssv18316558	Remapped	Perfect	NC_000005.10:g.(?_ 777018)_(815980_?) del	GRCh38.p12	First Pass	NC_000005.10	Chr5	777,018	815,980
nssv18317639	Remapped	Perfect	NC_000005.10:g.(?_ 777018)_(815980_?) dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	777,018	815,980
nssv18319374	Remapped	Perfect	NC_000005.10:g.(?_ 777018)_(815980_?) del	GRCh38.p12	First Pass	NC_000005.10	Chr5	777,018	815,980
nssv18319377	Remapped	Perfect	NC_000005.10:g.(?_ 777018)_(815980_?) dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	777,018	815,980
nssv18319569	Remapped	Perfect	NC_000005.10:g.(?_ 777018)_(815980_?) dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	777,018	815,980
nssv18303464	Submitted genomic		NC_000005.9:g.(?_7 77133)_(816095_?)d up	GRCh37 (hg19)		NC_000005.9	Chr5	777,133	816,095
nssv18303536	Submitted genomic		NC_000005.9:g.(?_7 77133)_(816095_?)d up	GRCh37 (hg19)		NC_000005.9	Chr5	777,133	816,095
nssv18304454	Submitted genomic		NC_000005.9:g.(?_7 77133)_(816095_?)d up	GRCh37 (hg19)		NC_000005.9	Chr5	777,133	816,095
nssv18304464	Submitted genomic		NC_000005.9:g.(?_7 77133)_(816095_?)d up	GRCh37 (hg19)		NC_000005.9	Chr5	777,133	816,095
nssv18304505	Submitted genomic		NC_000005.9:g.(?_7 77133)_(816095_?)d up	GRCh37 (hg19)		NC_000005.9	Chr5	777,133	816,095
nssv18304663	Submitted genomic		NC_000005.9:g.(?_7 77133)_(816095_?)d el	GRCh37 (hg19)		NC_000005.9	Chr5	777,133	816,095
nssv18304758	Submitted genomic		NC_000005.9:g.(?_7 77133)_(816095_?)d up	GRCh37 (hg19)		NC_000005.9	Chr5	777,133	816,095
nssv18305475	Submitted genomic		NC_000005.9:g.(?_7 77133)_(816095_?)d up	GRCh37 (hg19)		NC_000005.9	Chr5	777,133	816,095
nssv18305976	Submitted genomic		NC_000005.9:g.(?_7 77133)_(816095_?)d el	GRCh37 (hg19)		NC_000005.9	Chr5	777,133	816,095
nssv18308397	Submitted genomic		NC_000005.9:g.(?_7 77133)_(816095_?)d el	GRCh37 (hg19)		NC_000005.9	Chr5	777,133	816,095
nssv18308605	Submitted genomic		NC_000005.9:g.(?_7 77133)_(816095_?)d up	GRCh37 (hg19)		NC_000005.9	Chr5	777,133	816,095
nssv18309430	Submitted genomic		NC_000005.9:g.(?_7 77133)_(816095_?)d up	GRCh37 (hg19)		NC_000005.9	Chr5	777,133	816,095
nssv18309594	Submitted genomic		NC_000005.9:g.(?_7 77133)_(816095_?)d up	GRCh37 (hg19)		NC_000005.9	Chr5	777,133	816,095
nssv18310023	Submitted genomic		NC_000005.9:g.(?_7 77133)_(816095_?)d el	GRCh37 (hg19)		NC_000005.9	Chr5	777,133	816,095
nssv18310362	Submitted genomic		NC_000005.9:g.(?_7 77133)_(816095_?)d up	GRCh37 (hg19)		NC_000005.9	Chr5	777,133	816,095
nssv18310438	Submitted genomic		NC_000005.9:g.(?_7 77133)_(816095_?)d up	GRCh37 (hg19)		NC_000005.9	Chr5	777,133	816,095
nssv18310575	Submitted genomic		NC_000005.9:g.(?_7 77133)_(816095_?)d up	GRCh37 (hg19)		NC_000005.9	Chr5	777,133	816,095
nssv18310796	Submitted genomic		NC_000005.9:g.(?_7 77133)_(816095_?)d up	GRCh37 (hg19)		NC_000005.9	Chr5	777,133	816,095
nssv18311732	Submitted genomic		NC_000005.9:g.(?_7 77133)_(816095_?)d el	GRCh37 (hg19)		NC_000005.9	Chr5	777,133	816,095
nssv18311853	Submitted genomic		NC_000005.9:g.(?_7 77133)_(816095_?)d up	GRCh37 (hg19)		NC_000005.9	Chr5	777,133	816,095
nssv18312152	Submitted genomic		NC_000005.9:g.(?_7 77133)_(816095_?)d up	GRCh37 (hg19)		NC_000005.9	Chr5	777,133	816,095
nssv18313090	Submitted genomic		NC_000005.9:g.(?_7 77133)_(816095_?)d up	GRCh37 (hg19)		NC_000005.9	Chr5	777,133	816,095
nssv18313536	Submitted genomic		NC_000005.9:g.(?_7 77133)_(816095_?)d up	GRCh37 (hg19)		NC_000005.9	Chr5	777,133	816,095
nssv18313789	Submitted genomic		NC_000005.9:g.(?_7 77133)_(816095_?)d el	GRCh37 (hg19)		NC_000005.9	Chr5	777,133	816,095
nssv18314549	Submitted genomic		NC_000005.9:g.(?_7 77133)_(816095_?)d up	GRCh37 (hg19)		NC_000005.9	Chr5	777,133	816,095
nssv18314573	Submitted genomic		NC_000005.9:g.(?_7 77133)_(816095_?)d up	GRCh37 (hg19)		NC_000005.9	Chr5	777,133	816,095
nssv18315688	Submitted genomic		NC_000005.9:g.(?_7 77133)_(816095_?)d up	GRCh37 (hg19)		NC_000005.9	Chr5	777,133	816,095
nssv18316330	Submitted genomic		NC_000005.9:g.(?_7 77133)_(816095_?)d el	GRCh37 (hg19)		NC_000005.9	Chr5	777,133	816,095
nssv18316416	Submitted genomic		NC_000005.9:g.(?_7 77133)_(816095_?)d el	GRCh37 (hg19)		NC_000005.9	Chr5	777,133	816,095
nssv18316558	Submitted genomic		NC_000005.9:g.(?_7 77133)_(816095_?)d el	GRCh37 (hg19)		NC_000005.9	Chr5	777,133	816,095
nssv18317639	Submitted genomic		NC_000005.9:g.(?_7 77133)_(816095_?)d up	GRCh37 (hg19)		NC_000005.9	Chr5	777,133	816,095
nssv18319374	Submitted genomic		NC_000005.9:g.(?_7 77133)_(816095_?)d el	GRCh37 (hg19)		NC_000005.9	Chr5	777,133	816,095
nssv18319377	Submitted genomic		NC_000005.9:g.(?_7 77133)_(816095_?)d up	GRCh37 (hg19)		NC_000005.9	Chr5	777,133	816,095
nssv18319569	Submitted genomic		NC_000005.9:g.(?_7 77133)_(816095_?)d up	GRCh37 (hg19)		NC_000005.9	Chr5	777,133	816,095

dbVar

Database of genomic structural variation

nsv6630883

Links to Other Resources

Genome View

Variant Region Placement Information

Variant Call Information

Variant Call Placement Information

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant