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dbVar

Database of genomic structural variation

nsv6628904

Organism: Homo sapiens

Study:nstd224 (Zarrei et al. 2023)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:10,385

Publication(s):Zarrei et al. 2023

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 148 SVs from 38 studies. See in: genome view

Remapped(Score: Perfect):105,542,556-105,552,940

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv6628904	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000004.12	Chr4	105,542,556	105,552,940
nsv6628904	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000004.11	Chr4	106,463,713	106,474,097

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv18282899	deletion	OSC2293	SNP array	Probe signal intensity	8
nssv18324362	deletion	OSC1702	SNP array	Probe signal intensity	8
nssv18325021	deletion	OSC1961	SNP array	Probe signal intensity	nssv18325022, nssv18325020

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv18282899	Remapped	Perfect	NC_000004.12:g.(?_ 105542556)_(105552 940_?)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	105,542,556	105,552,940
nssv18324362	Remapped	Perfect	NC_000004.12:g.(?_ 105542556)_(105552 940_?)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	105,542,556	105,552,940
nssv18325021	Remapped	Perfect	NC_000004.12:g.(?_ 105542556)_(105552 940_?)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	105,542,556	105,552,940
nssv18282899	Submitted genomic		NC_000004.11:g.(?_ 106463713)_(106474 097_?)del	GRCh37 (hg19)		NC_000004.11	Chr4	106,463,713	106,474,097
nssv18324362	Submitted genomic		NC_000004.11:g.(?_ 106463713)_(106474 097_?)del	GRCh37 (hg19)		NC_000004.11	Chr4	106,463,713	106,474,097
nssv18325021	Submitted genomic		NC_000004.11:g.(?_ 106463713)_(106474 097_?)del	GRCh37 (hg19)		NC_000004.11	Chr4	106,463,713	106,474,097

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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