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dbVar

Database of genomic structural variation

nsv6628698

Organism: Homo sapiens

Study:nstd224 (Zarrei et al. 2023)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37

Variant Calls:5
Validation:Not tested
Clinical Assertions: No
Region Size:29,033

Publication(s):Zarrei et al. 2023

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 308 SVs from 58 studies. See in: genome view

Remapped(Score: Perfect):145,507,323-145,536,355

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv6628698	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000003.12	Chr3	145,507,323	145,536,355
nsv6628698	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000003.11	Chr3	145,225,110	145,254,142

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv18282352	deletion	OSC2108	SNP array	Probe signal intensity	nssv18281717, nssv18281718, nssv18281719
nssv18282470	deletion	OSC2189	SNP array	Probe signal intensity	6
nssv18286700	deletion	OSC3008	SNP array	Probe signal intensity	nssv18286699, nssv18287600, nssv18287601
nssv18315250	deletion	OSC0833	SNP array	Probe signal intensity	6
nssv18320967	deletion	OSC1060	SNP array	Probe signal intensity	7

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv18282352	Remapped	Perfect	NC_000003.12:g.(?_ 145507323)_(145536 355_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	145,507,323	145,536,355
nssv18282470	Remapped	Perfect	NC_000003.12:g.(?_ 145507323)_(145536 355_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	145,507,323	145,536,355
nssv18286700	Remapped	Perfect	NC_000003.12:g.(?_ 145507323)_(145536 355_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	145,507,323	145,536,355
nssv18315250	Remapped	Perfect	NC_000003.12:g.(?_ 145507323)_(145536 355_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	145,507,323	145,536,355
nssv18320967	Remapped	Perfect	NC_000003.12:g.(?_ 145507323)_(145536 355_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	145,507,323	145,536,355
nssv18282352	Submitted genomic		NC_000003.11:g.(?_ 145225110)_(145254 142_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	145,225,110	145,254,142
nssv18282470	Submitted genomic		NC_000003.11:g.(?_ 145225110)_(145254 142_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	145,225,110	145,254,142
nssv18286700	Submitted genomic		NC_000003.11:g.(?_ 145225110)_(145254 142_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	145,225,110	145,254,142
nssv18315250	Submitted genomic		NC_000003.11:g.(?_ 145225110)_(145254 142_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	145,225,110	145,254,142
nssv18320967	Submitted genomic		NC_000003.11:g.(?_ 145225110)_(145254 142_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	145,225,110	145,254,142

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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