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dbVar

Database of genomic structural variation

nsv6625813

Organism: Homo sapiens

Study:nstd224 (Zarrei et al. 2023)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37

Variant Calls:6
Validation:Not tested
Clinical Assertions: No
Region Size:13,621

Publication(s):Zarrei et al. 2023

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1123 SVs from 86 studies. See in: genome view

Remapped(Score: Good):12,847,836-12,861,456

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv6625813	Remapped	Good	GRCh38.p12	Primary Assembly	First Pass	NC_000001.11	Chr1	12,847,836	12,861,456
nsv6625813	Remapped	Good	GRCh38.p12	PATCHES	Second Pass	NW_012132914.1	Chr1\|NW_01 2132914.1	29,349	42,969
nsv6625813	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000001.10	Chr1	12,907,689	12,921,311

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv18285610	deletion	OSC0298	SNP array	Probe signal intensity	5
nssv18285977	deletion	OSC2716	SNP array	Probe signal intensity	6
nssv18290456	deletion	OSC3702	SNP array	Probe signal intensity	nssv18291046
nssv18311107	deletion	OSC0768	SNP array	Probe signal intensity	8
nssv18325330	deletion	OSC0202	SNP array	Probe signal intensity	9
nssv18325960	deletion	OSC0206	SNP array	Probe signal intensity	7

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv18285610	Remapped	Good	NW_012132914.1:g.( ?_29349)_(42969_?) del	GRCh38.p12	Second Pass	NW_012132914.1	Chr1\|NW_01 2132914.1	29,349	42,969
nssv18285977	Remapped	Good	NW_012132914.1:g.( ?_29349)_(42969_?) del	GRCh38.p12	Second Pass	NW_012132914.1	Chr1\|NW_01 2132914.1	29,349	42,969
nssv18290456	Remapped	Good	NW_012132914.1:g.( ?_29349)_(42969_?) del	GRCh38.p12	Second Pass	NW_012132914.1	Chr1\|NW_01 2132914.1	29,349	42,969
nssv18311107	Remapped	Good	NW_012132914.1:g.( ?_29349)_(42969_?) del	GRCh38.p12	Second Pass	NW_012132914.1	Chr1\|NW_01 2132914.1	29,349	42,969
nssv18325330	Remapped	Good	NW_012132914.1:g.( ?_29349)_(42969_?) del	GRCh38.p12	Second Pass	NW_012132914.1	Chr1\|NW_01 2132914.1	29,349	42,969
nssv18325960	Remapped	Good	NW_012132914.1:g.( ?_29349)_(42969_?) del	GRCh38.p12	Second Pass	NW_012132914.1	Chr1\|NW_01 2132914.1	29,349	42,969
nssv18285610	Remapped	Good	NC_000001.11:g.(?_ 12847836)_(1286145 6_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	12,847,836	12,861,456
nssv18285977	Remapped	Good	NC_000001.11:g.(?_ 12847836)_(1286145 6_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	12,847,836	12,861,456
nssv18290456	Remapped	Good	NC_000001.11:g.(?_ 12847836)_(1286145 6_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	12,847,836	12,861,456
nssv18311107	Remapped	Good	NC_000001.11:g.(?_ 12847836)_(1286145 6_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	12,847,836	12,861,456
nssv18325330	Remapped	Good	NC_000001.11:g.(?_ 12847836)_(1286145 6_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	12,847,836	12,861,456
nssv18325960	Remapped	Good	NC_000001.11:g.(?_ 12847836)_(1286145 6_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	12,847,836	12,861,456
nssv18285610	Submitted genomic		NC_000001.10:g.(?_ 12907689)_(1292131 1_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	12,907,689	12,921,311
nssv18285977	Submitted genomic		NC_000001.10:g.(?_ 12907689)_(1292131 1_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	12,907,689	12,921,311
nssv18290456	Submitted genomic		NC_000001.10:g.(?_ 12907689)_(1292131 1_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	12,907,689	12,921,311
nssv18311107	Submitted genomic		NC_000001.10:g.(?_ 12907689)_(1292131 1_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	12,907,689	12,921,311
nssv18325330	Submitted genomic		NC_000001.10:g.(?_ 12907689)_(1292131 1_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	12,907,689	12,921,311
nssv18325960	Submitted genomic		NC_000001.10:g.(?_ 12907689)_(1292131 1_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	12,907,689	12,921,311

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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