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dbVar

Database of genomic structural variation

nsv6622613

Organism: Homo sapiens

Study:nstd224 (Zarrei et al. 2023)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37

Variant Calls:8
Validation:Not tested
Clinical Assertions: No
Region Size:18,734

Publication(s):Zarrei et al. 2023

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 3564 SVs from 89 studies. See in: genome view

Remapped(Score: Perfect):22,080,637-22,099,370

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv6622613	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000015.10	Chr15	22,080,637	22,099,370
nsv6622613	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000015.9	Chr15	22,368,588	22,387,321

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv18281706	duplication	OSC2100	SNP array	Probe signal intensity	nssv18282340, nssv18282341
nssv18282790	duplication	OSC2212	SNP array	Probe signal intensity	nssv18282498, nssv18282789, nssv18282791
nssv18291131	duplication	OSC3760	SNP array	Probe signal intensity	5
nssv18293013	duplication	OSC4197	SNP array	Probe signal intensity	nssv18293012, nssv18293908
nssv18297784	duplication	OSC4996	SNP array	Probe signal intensity	nssv18298358, nssv18298024, nssv18297785
nssv18301684	duplication	OSC5666	SNP array	Probe signal intensity	9
nssv18324615	duplication	OSC1673	SNP array	Probe signal intensity	nssv18324324, nssv18324616, nssv18324045
nssv18325331	duplication	OSC1928	SNP array	Probe signal intensity	6

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv18281706	Remapped	Perfect	NC_000015.10:g.(?_ 22080637)_(2209937 0_?)dup	GRCh38.p12	First Pass	NC_000015.10	Chr15	22,080,637	22,099,370
nssv18282790	Remapped	Perfect	NC_000015.10:g.(?_ 22080637)_(2209937 0_?)dup	GRCh38.p12	First Pass	NC_000015.10	Chr15	22,080,637	22,099,370
nssv18291131	Remapped	Perfect	NC_000015.10:g.(?_ 22080637)_(2209937 0_?)dup	GRCh38.p12	First Pass	NC_000015.10	Chr15	22,080,637	22,099,370
nssv18293013	Remapped	Perfect	NC_000015.10:g.(?_ 22080637)_(2209937 0_?)dup	GRCh38.p12	First Pass	NC_000015.10	Chr15	22,080,637	22,099,370
nssv18297784	Remapped	Perfect	NC_000015.10:g.(?_ 22080637)_(2209937 0_?)dup	GRCh38.p12	First Pass	NC_000015.10	Chr15	22,080,637	22,099,370
nssv18301684	Remapped	Perfect	NC_000015.10:g.(?_ 22080637)_(2209937 0_?)dup	GRCh38.p12	First Pass	NC_000015.10	Chr15	22,080,637	22,099,370
nssv18324615	Remapped	Perfect	NC_000015.10:g.(?_ 22080637)_(2209937 0_?)dup	GRCh38.p12	First Pass	NC_000015.10	Chr15	22,080,637	22,099,370
nssv18325331	Remapped	Perfect	NC_000015.10:g.(?_ 22080637)_(2209937 0_?)dup	GRCh38.p12	First Pass	NC_000015.10	Chr15	22,080,637	22,099,370
nssv18281706	Submitted genomic		NC_000015.9:g.(?_2 2368588)_(22387321 _?)dup	GRCh37 (hg19)		NC_000015.9	Chr15	22,368,588	22,387,321
nssv18282790	Submitted genomic		NC_000015.9:g.(?_2 2368588)_(22387321 _?)dup	GRCh37 (hg19)		NC_000015.9	Chr15	22,368,588	22,387,321
nssv18291131	Submitted genomic		NC_000015.9:g.(?_2 2368588)_(22387321 _?)dup	GRCh37 (hg19)		NC_000015.9	Chr15	22,368,588	22,387,321
nssv18293013	Submitted genomic		NC_000015.9:g.(?_2 2368588)_(22387321 _?)dup	GRCh37 (hg19)		NC_000015.9	Chr15	22,368,588	22,387,321
nssv18297784	Submitted genomic		NC_000015.9:g.(?_2 2368588)_(22387321 _?)dup	GRCh37 (hg19)		NC_000015.9	Chr15	22,368,588	22,387,321
nssv18301684	Submitted genomic		NC_000015.9:g.(?_2 2368588)_(22387321 _?)dup	GRCh37 (hg19)		NC_000015.9	Chr15	22,368,588	22,387,321
nssv18324615	Submitted genomic		NC_000015.9:g.(?_2 2368588)_(22387321 _?)dup	GRCh37 (hg19)		NC_000015.9	Chr15	22,368,588	22,387,321
nssv18325331	Submitted genomic		NC_000015.9:g.(?_2 2368588)_(22387321 _?)dup	GRCh37 (hg19)		NC_000015.9	Chr15	22,368,588	22,387,321

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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