nsv6621005
- Organism: Homo sapiens
- Study:nstd224 (Zarrei et al. 2023)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:GRCh37
- Variant Calls:15
- Validation:Not tested
- Clinical Assertions: No
- Region Size:17,526
- Publication(s):Zarrei et al. 2023
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 275 SVs from 66 studies. See in: genome view
Overlapping variant regions from other studies: 275 SVs from 66 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv6621005 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000011.10 | Chr11 | 5,884,327 | 5,901,852 |
| nsv6621005 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000011.9 | Chr11 | 5,905,557 | 5,923,082 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv18298152 | duplication | OSC5081 | SNP array | Probe signal intensity | 7 |
| nssv18298276 | duplication | OSC4929 | SNP array | Probe signal intensity | 7 |
| nssv18298366 | duplication | OSC5003 | SNP array | Probe signal intensity | nssv18298031, nssv18298032, nssv18298033 |
| nssv18299413 | duplication | OSC5343 | SNP array | Probe signal intensity | 10 |
| nssv18299559 | duplication | OSC5190 | SNP array | Probe signal intensity | 7 |
| nssv18299878 | duplication | OSC5200 | SNP array | Probe signal intensity | 5 |
| nssv18300406 | duplication | OSC5583 | SNP array | Probe signal intensity | 5 |
| nssv18300521 | duplication | OSC5491 | SNP array | Probe signal intensity | 7 |
| nssv18300564 | duplication | OSC5519 | SNP array | Probe signal intensity | 9 |
| nssv18300573 | duplication | OSC5528 | SNP array | Probe signal intensity | 5 |
| nssv18300923 | duplication | OSC5523 | SNP array | Probe signal intensity | 6 |
| nssv18301425 | duplication | OSC5661 | SNP array | Probe signal intensity | nssv18302301 |
| nssv18301452 | duplication | OSC5675 | SNP array | Probe signal intensity | 8 |
| nssv18302374 | duplication | OSC5709 | SNP array | Probe signal intensity | 6 |
| nssv18302380 | duplication | OSC5716 | SNP array | Probe signal intensity | 6 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv18298152 | Remapped | Perfect | NC_000011.10:g.(?_ 5884327)_(5901852_ ?)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 5,884,327 | 5,901,852 |
| nssv18298276 | Remapped | Perfect | NC_000011.10:g.(?_ 5884327)_(5901852_ ?)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 5,884,327 | 5,901,852 |
| nssv18298366 | Remapped | Perfect | NC_000011.10:g.(?_ 5884327)_(5901852_ ?)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 5,884,327 | 5,901,852 |
| nssv18299413 | Remapped | Perfect | NC_000011.10:g.(?_ 5884327)_(5901852_ ?)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 5,884,327 | 5,901,852 |
| nssv18299559 | Remapped | Perfect | NC_000011.10:g.(?_ 5884327)_(5901852_ ?)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 5,884,327 | 5,901,852 |
| nssv18299878 | Remapped | Perfect | NC_000011.10:g.(?_ 5884327)_(5901852_ ?)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 5,884,327 | 5,901,852 |
| nssv18300406 | Remapped | Perfect | NC_000011.10:g.(?_ 5884327)_(5901852_ ?)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 5,884,327 | 5,901,852 |
| nssv18300521 | Remapped | Perfect | NC_000011.10:g.(?_ 5884327)_(5901852_ ?)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 5,884,327 | 5,901,852 |
| nssv18300564 | Remapped | Perfect | NC_000011.10:g.(?_ 5884327)_(5901852_ ?)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 5,884,327 | 5,901,852 |
| nssv18300573 | Remapped | Perfect | NC_000011.10:g.(?_ 5884327)_(5901852_ ?)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 5,884,327 | 5,901,852 |
| nssv18300923 | Remapped | Perfect | NC_000011.10:g.(?_ 5884327)_(5901852_ ?)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 5,884,327 | 5,901,852 |
| nssv18301425 | Remapped | Perfect | NC_000011.10:g.(?_ 5884327)_(5901852_ ?)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 5,884,327 | 5,901,852 |
| nssv18301452 | Remapped | Perfect | NC_000011.10:g.(?_ 5884327)_(5901852_ ?)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 5,884,327 | 5,901,852 |
| nssv18302374 | Remapped | Perfect | NC_000011.10:g.(?_ 5884327)_(5901852_ ?)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 5,884,327 | 5,901,852 |
| nssv18302380 | Remapped | Perfect | NC_000011.10:g.(?_ 5884327)_(5901852_ ?)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 5,884,327 | 5,901,852 |
| nssv18298152 | Submitted genomic | NC_000011.9:g.(?_5 905557)_(5923082_? )dup | GRCh37 (hg19) | NC_000011.9 | Chr11 | 5,905,557 | 5,923,082 | ||
| nssv18298276 | Submitted genomic | NC_000011.9:g.(?_5 905557)_(5923082_? )dup | GRCh37 (hg19) | NC_000011.9 | Chr11 | 5,905,557 | 5,923,082 | ||
| nssv18298366 | Submitted genomic | NC_000011.9:g.(?_5 905557)_(5923082_? )dup | GRCh37 (hg19) | NC_000011.9 | Chr11 | 5,905,557 | 5,923,082 | ||
| nssv18299413 | Submitted genomic | NC_000011.9:g.(?_5 905557)_(5923082_? )dup | GRCh37 (hg19) | NC_000011.9 | Chr11 | 5,905,557 | 5,923,082 | ||
| nssv18299559 | Submitted genomic | NC_000011.9:g.(?_5 905557)_(5923082_? )dup | GRCh37 (hg19) | NC_000011.9 | Chr11 | 5,905,557 | 5,923,082 | ||
| nssv18299878 | Submitted genomic | NC_000011.9:g.(?_5 905557)_(5923082_? )dup | GRCh37 (hg19) | NC_000011.9 | Chr11 | 5,905,557 | 5,923,082 | ||
| nssv18300406 | Submitted genomic | NC_000011.9:g.(?_5 905557)_(5923082_? )dup | GRCh37 (hg19) | NC_000011.9 | Chr11 | 5,905,557 | 5,923,082 | ||
| nssv18300521 | Submitted genomic | NC_000011.9:g.(?_5 905557)_(5923082_? )dup | GRCh37 (hg19) | NC_000011.9 | Chr11 | 5,905,557 | 5,923,082 | ||
| nssv18300564 | Submitted genomic | NC_000011.9:g.(?_5 905557)_(5923082_? )dup | GRCh37 (hg19) | NC_000011.9 | Chr11 | 5,905,557 | 5,923,082 | ||
| nssv18300573 | Submitted genomic | NC_000011.9:g.(?_5 905557)_(5923082_? )dup | GRCh37 (hg19) | NC_000011.9 | Chr11 | 5,905,557 | 5,923,082 | ||
| nssv18300923 | Submitted genomic | NC_000011.9:g.(?_5 905557)_(5923082_? )dup | GRCh37 (hg19) | NC_000011.9 | Chr11 | 5,905,557 | 5,923,082 | ||
| nssv18301425 | Submitted genomic | NC_000011.9:g.(?_5 905557)_(5923082_? )dup | GRCh37 (hg19) | NC_000011.9 | Chr11 | 5,905,557 | 5,923,082 | ||
| nssv18301452 | Submitted genomic | NC_000011.9:g.(?_5 905557)_(5923082_? )dup | GRCh37 (hg19) | NC_000011.9 | Chr11 | 5,905,557 | 5,923,082 | ||
| nssv18302374 | Submitted genomic | NC_000011.9:g.(?_5 905557)_(5923082_? )dup | GRCh37 (hg19) | NC_000011.9 | Chr11 | 5,905,557 | 5,923,082 | ||
| nssv18302380 | Submitted genomic | NC_000011.9:g.(?_5 905557)_(5923082_? )dup | GRCh37 (hg19) | NC_000011.9 | Chr11 | 5,905,557 | 5,923,082 |