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dbVar

Database of genomic structural variation

nsv6620271

Organism: Homo sapiens

Study:nstd224 (Zarrei et al. 2023)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:36,896

Publication(s):Zarrei et al. 2023

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 680 SVs from 73 studies. See in: genome view

Remapped(Score: Perfect):133,588,696-133,625,591

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv6620271	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000010.11	Chr10	133,588,696	133,625,591
nsv6620271	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000010.10	Chr10	135,402,200	135,439,095

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv18283717	deletion	OSC2431	SNP array	Probe signal intensity	5
nssv18286284	deletion	OSC2712	SNP array	Probe signal intensity	5
nssv18320254	deletion	OSC0932	SNP array	Probe signal intensity	nssv18320253, nssv18320519

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv18283717	Remapped	Perfect	NC_000010.11:g.(?_ 133588696)_(133625 591_?)del	GRCh38.p12	First Pass	NC_000010.11	Chr10	133,588,696	133,625,591
nssv18286284	Remapped	Perfect	NC_000010.11:g.(?_ 133588696)_(133625 591_?)del	GRCh38.p12	First Pass	NC_000010.11	Chr10	133,588,696	133,625,591
nssv18320254	Remapped	Perfect	NC_000010.11:g.(?_ 133588696)_(133625 591_?)del	GRCh38.p12	First Pass	NC_000010.11	Chr10	133,588,696	133,625,591
nssv18283717	Submitted genomic		NC_000010.10:g.(?_ 135402200)_(135439 095_?)del	GRCh37 (hg19)		NC_000010.10	Chr10	135,402,200	135,439,095
nssv18286284	Submitted genomic		NC_000010.10:g.(?_ 135402200)_(135439 095_?)del	GRCh37 (hg19)		NC_000010.10	Chr10	135,402,200	135,439,095
nssv18320254	Submitted genomic		NC_000010.10:g.(?_ 135402200)_(135439 095_?)del	GRCh37 (hg19)		NC_000010.10	Chr10	135,402,200	135,439,095

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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