Warning: The NCBI web site requires JavaScript to function. more...

dbVar

Database of genomic structural variation

nsv6553317

Organism: Homo sapiens

Study:nstd223 (Sedlazeck et al. 2020)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh38

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:2,796

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 95 SVs from 24 studies. See in: genome view

Submitted genomic41,563,871-41,566,666

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv6553317	Submitted genomic		GRCh38 (hg38)	Primary Assembly		NC_000022.11	Chr22	41,563,871	41,566,666
nsv6553317	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000022.10	Chr22	41,959,875	41,962,670

Variant Call Information

Variant Call ID	Type	Method	Analysis
nssv18074519	deletion	Sequencing	Sequence alignment

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv18074519	Submitted genomic		NC_000022.11:g.415 63871_41566666del	GRCh38 (hg38)		NC_000022.11	Chr22	41,563,871	41,566,666
nssv18074519	Remapped	Perfect	NC_000022.10:g.419 59875_41962670del	GRCh37.p13	First Pass	NC_000022.10	Chr22	41,959,875	41,962,670

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.

Genotype Information

Variant Call ID	Allele Frequency (AF)	Allele Count (AC)	Allele Number (AN)
nssv18074519	<0.001	1	38704

You are here: NCBI