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dbVar

Database of genomic structural variation

nsv6322338

Organism: Homo sapiens

Study:nstd223 (Sedlazeck et al. 2020)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh38

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:1,381

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 114 SVs from 17 studies. See in: genome view

Submitted genomic54,198,711-54,200,091

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv6322338	Submitted genomic		GRCh38 (hg38)	Primary Assembly		NC_000001.11	Chr1	54,198,711	54,200,091
nsv6322338	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000001.10	Chr1	54,664,384	54,665,764

Variant Call Information

Variant Call ID	Type	Method	Analysis
nssv18201469	duplication	Sequencing	Sequence alignment

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv18201469	Submitted genomic		NC_000001.11:g.541 98711_54200091dup	GRCh38 (hg38)		NC_000001.11	Chr1	54,198,711	54,200,091
nssv18201469	Remapped	Perfect	NC_000001.10:g.546 64384_54665764dup	GRCh37.p13	First Pass	NC_000001.10	Chr1	54,664,384	54,665,764

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.

Genotype Information

Variant Call ID	Allele Frequency (AF)	Allele Count (AC)	Allele Number (AN)
nssv18201469	<0.001	1	39176

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