nsv6314164
- Organism: Homo sapiens
- Study:nstd102 (Clinical Structural Variants)
- Variant Type:copy number variation
- Method Type:Multiple
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:2,894,479
- Description:GRCh37/hg19 20p11.23-11.22(chr20:19292925-22187397) AND not specified
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 6918 SVs from 91 studies. See in: genome view
Overlapping variant regions from other studies: 6918 SVs from 91 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv6314164 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000020.11 | Chr20 | 19,312,281 | 22,206,759 |
| nsv6314164 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000020.10 | Chr20 | 19,292,925 | 22,187,397 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID |
|---|---|---|---|---|---|---|---|
| nssv17969241 | copy number loss | Multiple | Multiple | not specified | Pathogenic | ClinVar | RCV002052705.3, VCV001526686.3 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv17969241 | Remapped | Perfect | NC_000020.11:g.(?_ 19312281)_(2220675 9_?)del | GRCh38.p12 | First Pass | NC_000020.11 | Chr20 | 19,312,281 | 22,206,759 |
| nssv17969241 | Submitted genomic | NC_000020.10:g.(?_ 19292925)_(2218739 7_?)del | GRCh37 (hg19) | NC_000020.10 | Chr20 | 19,292,925 | 22,187,397 |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID |
|---|---|---|---|---|---|---|---|
| nssv17969241 | GRCh37: NC_000020.10:g.(?_19292925)_(22187397_?)del | copy number loss | germline | not specified | Pathogenic | ClinVar | RCV002052705.3, VCV001526686.3 |