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dbVar

Database of genomic structural variation

nsv6135434

Organism: Homo sapiens

Study:nstd213 (Pham et al. 2021)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh37

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:670,002

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 2582 SVs from 92 studies. See in: genome view

Remapped(Score: Perfect):69,034,173-69,704,174

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv6135434	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000005.10	Chr5	69,034,173	69,704,174
nsv6135434	Remapped	Pass	GRCh38.p12	ALT_REF_LOCI_1	Second Pass	NW_003315917.2	Chr5\|NW_00 3315917.2	1	337,557
nsv6135434	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000005.9	Chr5	68,330,000	69,000,001

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv17681046	copy number loss	SAMN20524662	Sequencing	Paired-end mapping	1,603

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv17681046	Remapped	Pass	NW_003315917.2:g.1 _337557del	GRCh38.p12	Second Pass	NW_003315917.2	Chr5\|NW_00 3315917.2	1	337,557
nssv17681046	Remapped	Perfect	NC_000005.10:g.690 34173_69704174del	GRCh38.p12	First Pass	NC_000005.10	Chr5	69,034,173	69,704,174
nssv17681046	Submitted genomic		NC_000005.9:g.6833 0000_69000001del	GRCh37 (hg19)		NC_000005.9	Chr5	68,330,000	69,000,001

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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