nsv6135116
- Organism: Homo sapiens
- Study:nstd213 (Pham et al. 2021)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:526,106
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1374 SVs from 72 studies. See in: genome view
Overlapping variant regions from other studies: 1366 SVs from 72 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv6135116 | Remapped | Pass | GRCh38.p12 | Primary Assembly | First Pass | NC_000005.10 | Chr5 | 138,984,311 | 139,510,416 |
| nsv6135116 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000005.9 | Chr5 | 138,320,000 | 138,890,001 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv17679323 | copy number loss | SAMN20524662 | Sequencing | Paired-end mapping | 1,603 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv17679323 | Remapped | Pass | NC_000005.10:g.138 984311_139510416de l | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 138,984,311 | 139,510,416 |
| nssv17679323 | Submitted genomic | NC_000005.9:g.1383 20000_138890001del | GRCh37 (hg19) | NC_000005.9 | Chr5 | 138,320,000 | 138,890,001 |