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dbVar

Database of genomic structural variation

nsv6134873

Organism: Homo sapiens

Study:nstd213 (Pham et al. 2021)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh37

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:48,989

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 803 SVs from 85 studies. See in: genome view

Remapped(Score: Perfect):34,778,333-34,827,321

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv6134873	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000004.12	Chr4	34,778,333	34,778,346	34,827,313	34,827,321
nsv6134873	Remapped	Perfect	GRCh38.p12	ALT_REF_LOCI_1	Second Pass	NW_003315915.1	Chr4\|NW_00 3315915.1	270,662	270,675	319,642	319,650
nsv6134873	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000004.11	Chr4	34,779,955	34,779,968	34,828,935	34,828,943

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv17680133	deletion	SAMN20524659	Sequencing	Paired-end mapping	203

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv17680133	Remapped	Perfect	NW_003315915.1:g.( 270662_270675)_(31 9642_319650)del	GRCh38.p12	Second Pass	NW_003315915.1	Chr4\|NW_00 3315915.1	270,662	270,675	319,642	319,650
nssv17680133	Remapped	Perfect	NC_000004.12:g.(34 778333_34778346)_( 34827313_34827321) del	GRCh38.p12	First Pass	NC_000004.12	Chr4	34,778,333	34,778,346	34,827,313	34,827,321
nssv17680133	Submitted genomic		NC_000004.11:g.(34 779955_34779968)_( 34828935_34828943) del	GRCh37 (hg19)		NC_000004.11	Chr4	34,779,955	34,779,968	34,828,935	34,828,943

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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