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dbVar

Database of genomic structural variation

nsv6134480

Organism: Homo sapiens

Study:nstd213 (Pham et al. 2021)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh37

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:68,008

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 312 SVs from 48 studies. See in: genome view

Remapped(Score: Perfect):175,441,954-175,509,961

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv6134480	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000003.12	Chr3	175,441,954	175,441,970	175,509,944	175,509,961
nsv6134480	Remapped	Perfect	GRCh38.p12	PATCHES	Second Pass	NW_019805489.1	Chr3\|NW_01 9805489.1	115,466	115,482	183,456	183,473
nsv6134480	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000003.11	Chr3	175,159,742	175,159,758	175,227,732	175,227,749

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv17679609	deletion	SAMN20524658	Sequencing	Paired-end mapping	48

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv17679609	Remapped	Perfect	NW_019805489.1:g.( 115466_115482)_(18 3456_183473)del	GRCh38.p12	Second Pass	NW_019805489.1	Chr3\|NW_01 9805489.1	115,466	115,482	183,456	183,473
nssv17679609	Remapped	Perfect	NC_000003.12:g.(17 5441954_175441970) _(175509944_175509 961)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	175,441,954	175,441,970	175,509,944	175,509,961
nssv17679609	Submitted genomic		NC_000003.11:g.(17 5159742_175159758) _(175227732_175227 749)del	GRCh37 (hg19)		NC_000003.11	Chr3	175,159,742	175,159,758	175,227,732	175,227,749

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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