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dbVar

Database of genomic structural variation

nsv6133294

Organism: Homo sapiens

Study:nstd213 (Pham et al. 2021)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh37

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:296,628

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 4870 SVs from 98 studies. See in: genome view

Remapped(Score: Good):150,208-446,835

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv6133294	Remapped	Good	GRCh38.p12	Primary Assembly	First Pass	NC_000017.11	Chr17	150,208	446,835
nsv6133294	Remapped	Good	GRCh38.p12	ALT_REF_LOCI_1	Second Pass	NW_003315952.3	Chr17\|NW_0 03315952.3	90,208	375,691
nsv6133294	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000017.10	Chr17	1	300,001

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv17677976	copy number loss	SAMN20524662	Sequencing	Paired-end mapping	1,603

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv17677976	Remapped	Good	NW_003315952.3:g.9 0208_375691del	GRCh38.p12	Second Pass	NW_003315952.3	Chr17\|NW_0 03315952.3	90,208	375,691
nssv17677976	Remapped	Good	NC_000017.11:g.150 208_446835del	GRCh38.p12	First Pass	NC_000017.11	Chr17	150,208	446,835
nssv17677976	Submitted genomic		NC_000017.10:g.1_3 00001del	GRCh37 (hg19)		NC_000017.10	Chr17	1	300,001

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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