nsv6112815
- Organism: Homo sapiens
- Study:nstd102 (Clinical Structural Variants)
- Variant Type:copy number variation
- Method Type:Multiple
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:23,584,929
- Description:GRCh37/hg19 18q21.31-23(chr18:54285235-77960815)x1 AND not provided
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 79260 SVs from 132 studies. See in: genome view
Overlapping variant regions from other studies: 79147 SVs from 132 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv6112815 | Remapped | Good | GRCh38.p12 | Primary Assembly | First Pass | NC_000018.10 | Chr18 | 56,618,004 | 80,202,932 |
| nsv6112815 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000018.9 | Chr18 | 54,285,235 | 77,960,815 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv17649896 | copy number loss | Multiple | Multiple | not provided | Pathogenic | ClinVar | RCV001531449.9, VCV001176065.10 | 1 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv17649896 | Remapped | Good | NC_000018.10:g.(?_ 56618004)_(8020293 2_?)del | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 56,618,004 | 80,202,932 |
| nssv17649896 | Submitted genomic | NC_000018.9:g.(?_5 4285235)_(77960815 _?)del | GRCh37 (hg19) | NC_000018.9 | Chr18 | 54,285,235 | 77,960,815 |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv17649896 | GRCh37: NC_000018.9:g.(?_54285235)_(77960815_?)del | copy number loss | germline | not provided | Pathogenic | ClinVar | RCV001531449.9, VCV001176065.10 | 1 |