nsv4827277
- Organism: Homo sapiens
- Study:nstd200 (Abel et al. 2020)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:6,497
- Publication(s):Abel et al. 2020
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 276 SVs from 52 studies. See in: genome view
Overlapping variant regions from other studies: 86 SVs from 31 studies. See in: genome view
Overlapping variant regions from other studies: 276 SVs from 52 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv4827277 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000007.14 | Chr7 | 144,015,716 | 144,022,212 |
| nsv4827277 | Remapped | Perfect | GRCh38.p12 | PATCHES | Second Pass | NW_018654714.1 | Chr7|NW_01 8654714.1 | 559,946 | 566,442 |
| nsv4827277 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000007.13 | Chr7 | 143,712,809 | 143,719,305 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv16342949 | deletion | Sequencing | Sequence alignment |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv16342949 | Remapped | Perfect | NW_018654714.1:g.5 59946_566442del | GRCh38.p12 | Second Pass | NW_018654714.1 | Chr7|NW_01 8654714.1 | 559,946 | 566,442 |
| nssv16342949 | Remapped | Perfect | NC_000007.14:g.144 015716_144022212de l | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 144,015,716 | 144,022,212 |
| nssv16342949 | Submitted genomic | NC_000007.13:g.143 712809_143719305de l | GRCh37 (hg19) | NC_000007.13 | Chr7 | 143,712,809 | 143,719,305 |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Genotype Information
| Variant Call ID | Allele Frequency (AF) | Allele Count (AC) | Allele Number (AN) |
|---|---|---|---|
| nssv16342949 | <0.001 | 2 | 16834 |