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dbVar

Database of genomic structural variation

nsv4728497

Organism: Homo sapiens

Study:nstd102 (Clinical Structural Variants)
Variant Type:copy number variation
Method Type:Multiple
Submitted on:GRCh37

Variant Calls:1
Validation:Not tested
Clinical Assertions: Yes
Region Size:1,820,522

Description:GRCh37/hg19 Yq11.223-11.23(chrY:25403868-27224389)x0 AND not provided

Links to Other Resources

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 793 SVs from 33 studies. See in: genome view

Remapped(Score: Perfect):23,257,721-25,078,242

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4728497	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000024.10	ChrY	23,257,721	25,078,242
nsv4728497	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000024.9	ChrY	25,403,868	27,224,389

Variant Call Information

Variant Call ID	Type	Method	Analysis	Subject Phenotype	Clinical Interpretation	Source of Interpretation	ClinVar ID	Copy number
nssv16254787	copy number loss	Multiple	Multiple	not provided	Uncertain significance	ClinVar	RCV001258430.1, VCV000979254.1	0

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv16254787	Remapped	Perfect	NC_000024.10:g.(?_ 23257721)_(2507824 2_?)del	GRCh38.p12	First Pass	NC_000024.10	ChrY	23,257,721	25,078,242
nssv16254787	Submitted genomic		NC_000024.9:g.(?_2 5403868)_(27224389 _?)del	GRCh37 (hg19)		NC_000024.9	ChrY	25,403,868	27,224,389

No validation data were submitted for this variant

Clinical Assertions

Variant Call ID	HGVS	Type	Allele Origin	Subject Phenotype	Clinical Interpretation	Source of Interpretation	ClinVar ID	Copy number
nssv16254787	GRCh37: NC_000024.9:g.(?_25403868)_(27224389_?)del	copy number loss	germline	not provided	Uncertain significance	ClinVar	RCV001258430.1, VCV000979254.1	0

No genotype data were submitted for this variant

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