nsv2560204
- Organism: Homo sapiens
- Study:nstd128 (Mallick et al. 2016)
- Variant Type:short tandem repeat
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:8
- Validation:Not tested
- Clinical Assertions: No
- Region Size:77
- Description:MOTIF=[TAGA],NS=[300],REF=[19.25],RL=[77],RPA=
[14.25,15.25,16.25,17.25,18.0,18.25,20.25],RU=[TAGA],QUAL=
[21979.2] - Publication(s):Mallick et al. 2016
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 132 SVs from 20 studies. See in: genome view
Overlapping variant regions from other studies: 132 SVs from 20 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv2560204 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000008.11 | Chr8 | 66,183,549 | 66,183,625 |
| nsv2560204 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000008.10 | Chr8 | 67,095,784 | 67,095,860 |
Variant Call Information
| Variant Call ID | Type | Repeat Motif | Method | Analysis |
|---|---|---|---|---|
| nssv12640957 | short tandem repeat | (TAGA) 16.25 | Sequencing | Genotyping |
| nssv12640958 | short tandem repeat | (TAGA) 15.25 | Sequencing | Genotyping |
| nssv12640959 | short tandem repeat | (TAGA) 18 | Sequencing | Genotyping |
| nssv12641232 | short tandem repeat | (TAGA) 17.25 | Sequencing | Genotyping |
| nssv12641233 | short tandem repeat | (TAGA) 20.25 | Sequencing | Genotyping |
| nssv12641234 | short tandem repeat | (TAGA) 14.25 | Sequencing | Genotyping |
| nssv12641570 | short tandem repeat | (TAGA) 18.25 | Sequencing | Genotyping |
| nssv12776008 | short tandem repeat | (TAGA) 19.25 (ref) | Sequencing | Genotyping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|
| nssv12640957 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 66,183,549 | 66,183,625 |
| nssv12640958 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 66,183,549 | 66,183,625 |
| nssv12640959 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 66,183,549 | 66,183,625 |
| nssv12641232 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 66,183,549 | 66,183,625 |
| nssv12641233 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 66,183,549 | 66,183,625 |
| nssv12641234 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 66,183,549 | 66,183,625 |
| nssv12641570 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 66,183,549 | 66,183,625 |
| nssv12776008 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 66,183,549 | 66,183,625 |
| nssv12640957 | Submitted genomic | GRCh37 (hg19) | NC_000008.10 | Chr8 | 67,095,784 | 67,095,860 | ||
| nssv12640958 | Submitted genomic | GRCh37 (hg19) | NC_000008.10 | Chr8 | 67,095,784 | 67,095,860 | ||
| nssv12640959 | Submitted genomic | GRCh37 (hg19) | NC_000008.10 | Chr8 | 67,095,784 | 67,095,860 | ||
| nssv12641232 | Submitted genomic | GRCh37 (hg19) | NC_000008.10 | Chr8 | 67,095,784 | 67,095,860 | ||
| nssv12641233 | Submitted genomic | GRCh37 (hg19) | NC_000008.10 | Chr8 | 67,095,784 | 67,095,860 | ||
| nssv12641234 | Submitted genomic | GRCh37 (hg19) | NC_000008.10 | Chr8 | 67,095,784 | 67,095,860 | ||
| nssv12641570 | Submitted genomic | GRCh37 (hg19) | NC_000008.10 | Chr8 | 67,095,784 | 67,095,860 | ||
| nssv12776008 | Submitted genomic | GRCh37 (hg19) | NC_000008.10 | Chr8 | 67,095,784 | 67,095,860 |