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nsv1807397

  • Variant Calls:16
  • Validation:Not tested
  • Clinical Assertions: No
  • Region Size:79
  • Description:MOTIF=[AGAT],NS=[301],REF=[19.75],RL=[79],RPA=
    [11.75,12.0,12.75,13.0,13.75,14.0,14.75,15.0,15.75,16.0,16
    .75,17.75,18.75,20.75,21.75],RU=[AGAT],QUAL=[60629.1]
  • Publication(s):Mallick et al. 2016

Links to Other Resources

Source: NCBI

Genome View

Select assembly:
Overlapping variant regions from other studies: 140 SVs from 28 studies. See in: genome view    
Remapped(Score: Perfect):81,933,543-81,933,621Question Mark
Overlapping variant regions from other studies: 140 SVs from 28 studies. See in: genome view    
Submitted genomic82,225,884-82,225,962Question Mark

Variant Region Placement Information

Variant Region IDPlacement TypeScoreAssemblyAssembly UnitReciprocitySequence IDChrStartStop
nsv1807397RemappedPerfectGRCh38.p12Primary AssemblyFirst PassNC_000015.10Chr1581,933,54381,933,621
nsv1807397Submitted genomicGRCh37 (hg19)Primary AssemblyNC_000015.9Chr1582,225,88482,225,962

Variant Call Information

Variant Call IDTypeRepeat MotifMethodAnalysis
nssv10123874short tandem repeat(AGAT) 16.75SequencingGenotyping
nssv10123875short tandem repeat(AGAT) 13SequencingGenotyping
nssv10123876short tandem repeat(AGAT) 15SequencingGenotyping
nssv10123877short tandem repeat(AGAT) 16SequencingGenotyping
nssv10123878short tandem repeat(AGAT) 14SequencingGenotyping
nssv10123879short tandem repeat(AGAT) 21.75SequencingGenotyping
nssv10123880short tandem repeat(AGAT) 12SequencingGenotyping
nssv10123881short tandem repeat(AGAT) 18.75SequencingGenotyping
nssv10123882short tandem repeat(AGAT) 14.75SequencingGenotyping
nssv10123883short tandem repeat(AGAT) 17.75SequencingGenotyping
nssv10123884short tandem repeat(AGAT) 11.75SequencingGenotyping
nssv10123885short tandem repeat(AGAT) 13.75SequencingGenotyping
nssv10123886short tandem repeat(AGAT) 15.75SequencingGenotyping
nssv10123887short tandem repeat(AGAT) 20.75SequencingGenotyping
nssv10123888short tandem repeat(AGAT) 12.75SequencingGenotyping
nssv10123889short tandem repeat(AGAT) 19.75 (ref)SequencingGenotyping

Variant Call Placement Information

Variant Call IDPlacement TypeScoreAssemblyReciprocitySequence IDChrStartStop
nssv10123874RemappedPerfectGRCh38.p12First PassNC_000015.10Chr1581,933,54381,933,621
nssv10123875RemappedPerfectGRCh38.p12First PassNC_000015.10Chr1581,933,54381,933,621
nssv10123876RemappedPerfectGRCh38.p12First PassNC_000015.10Chr1581,933,54381,933,621
nssv10123877RemappedPerfectGRCh38.p12First PassNC_000015.10Chr1581,933,54381,933,621
nssv10123878RemappedPerfectGRCh38.p12First PassNC_000015.10Chr1581,933,54381,933,621
nssv10123879RemappedPerfectGRCh38.p12First PassNC_000015.10Chr1581,933,54381,933,621
nssv10123880RemappedPerfectGRCh38.p12First PassNC_000015.10Chr1581,933,54381,933,621
nssv10123881RemappedPerfectGRCh38.p12First PassNC_000015.10Chr1581,933,54381,933,621
nssv10123882RemappedPerfectGRCh38.p12First PassNC_000015.10Chr1581,933,54381,933,621
nssv10123883RemappedPerfectGRCh38.p12First PassNC_000015.10Chr1581,933,54381,933,621
nssv10123884RemappedPerfectGRCh38.p12First PassNC_000015.10Chr1581,933,54381,933,621
nssv10123885RemappedPerfectGRCh38.p12First PassNC_000015.10Chr1581,933,54381,933,621
nssv10123886RemappedPerfectGRCh38.p12First PassNC_000015.10Chr1581,933,54381,933,621
nssv10123887RemappedPerfectGRCh38.p12First PassNC_000015.10Chr1581,933,54381,933,621
nssv10123888RemappedPerfectGRCh38.p12First PassNC_000015.10Chr1581,933,54381,933,621
nssv10123889RemappedPerfectGRCh38.p12First PassNC_000015.10Chr1581,933,54381,933,621
nssv10123874Submitted genomicGRCh37 (hg19)NC_000015.9Chr1582,225,88482,225,962
nssv10123875Submitted genomicGRCh37 (hg19)NC_000015.9Chr1582,225,88482,225,962
nssv10123876Submitted genomicGRCh37 (hg19)NC_000015.9Chr1582,225,88482,225,962
nssv10123877Submitted genomicGRCh37 (hg19)NC_000015.9Chr1582,225,88482,225,962
nssv10123878Submitted genomicGRCh37 (hg19)NC_000015.9Chr1582,225,88482,225,962
nssv10123879Submitted genomicGRCh37 (hg19)NC_000015.9Chr1582,225,88482,225,962
nssv10123880Submitted genomicGRCh37 (hg19)NC_000015.9Chr1582,225,88482,225,962
nssv10123881Submitted genomicGRCh37 (hg19)NC_000015.9Chr1582,225,88482,225,962
nssv10123882Submitted genomicGRCh37 (hg19)NC_000015.9Chr1582,225,88482,225,962
nssv10123883Submitted genomicGRCh37 (hg19)NC_000015.9Chr1582,225,88482,225,962
nssv10123884Submitted genomicGRCh37 (hg19)NC_000015.9Chr1582,225,88482,225,962
nssv10123885Submitted genomicGRCh37 (hg19)NC_000015.9Chr1582,225,88482,225,962
nssv10123886Submitted genomicGRCh37 (hg19)NC_000015.9Chr1582,225,88482,225,962
nssv10123887Submitted genomicGRCh37 (hg19)NC_000015.9Chr1582,225,88482,225,962
nssv10123888Submitted genomicGRCh37 (hg19)NC_000015.9Chr1582,225,88482,225,962
nssv10123889Submitted genomicGRCh37 (hg19)NC_000015.9Chr1582,225,88482,225,962

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype and/or allele frequency data can be found on dbVar's FTP site.

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