nsv1782130
- Organism: Homo sapiens
- Study:nstd128 (Mallick et al. 2016)
- Variant Type:short tandem repeat
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:4
- Validation:Not tested
- Clinical Assertions: No
- Region Size:78
- Description:MOTIF=[AAATA],NS=[300],REF=[15.6],RL=[78],RPA=
[13.6,14.6,16.6],RU=[AAATA],QUAL=[22276.6] - Publication(s):Mallick et al. 2016
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 135 SVs from 17 studies. See in: genome view
Overlapping variant regions from other studies: 135 SVs from 17 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv1782130 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000015.10 | Chr15 | 48,486,987 | 48,487,064 |
| nsv1782130 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000015.9 | Chr15 | 48,779,184 | 48,779,261 |
Variant Call Information
| Variant Call ID | Type | Repeat Motif | Method | Analysis |
|---|---|---|---|---|
| nssv10061961 | short tandem repeat | (AAATA) 13.6 | Sequencing | Genotyping |
| nssv10061962 | short tandem repeat | (AAATA) 14.6 | Sequencing | Genotyping |
| nssv10061963 | short tandem repeat | (AAATA) 16.6 | Sequencing | Genotyping |
| nssv10061964 | short tandem repeat | (AAATA) 15.6 (ref) | Sequencing | Genotyping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|
| nssv10061961 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 48,486,987 | 48,487,064 |
| nssv10061962 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 48,486,987 | 48,487,064 |
| nssv10061963 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 48,486,987 | 48,487,064 |
| nssv10061964 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 48,486,987 | 48,487,064 |
| nssv10061961 | Submitted genomic | GRCh37 (hg19) | NC_000015.9 | Chr15 | 48,779,184 | 48,779,261 | ||
| nssv10061962 | Submitted genomic | GRCh37 (hg19) | NC_000015.9 | Chr15 | 48,779,184 | 48,779,261 | ||
| nssv10061963 | Submitted genomic | GRCh37 (hg19) | NC_000015.9 | Chr15 | 48,779,184 | 48,779,261 | ||
| nssv10061964 | Submitted genomic | GRCh37 (hg19) | NC_000015.9 | Chr15 | 48,779,184 | 48,779,261 |