nsv1532825
- Organism: Homo sapiens
- Study:nstd128 (Mallick et al. 2016)
- Variant Type:short tandem repeat
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:7
- Validation:Not tested
- Clinical Assertions: No
- Region Size:79
- Description:MOTIF=[ATAC],NS=[301],REF=[19.75],RL=[79],RPA=
[13.75,14.75,15.75,16.75,17.75,18.75],RU=[ATAC],QUAL=[4018
1.8] - Publication(s):Mallick et al. 2016
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 184 SVs from 33 studies. See in: genome view
Overlapping variant regions from other studies: 184 SVs from 33 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv1532825 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000010.11 | Chr10 | 86,296,755 | 86,296,833 |
| nsv1532825 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000010.10 | Chr10 | 88,056,512 | 88,056,590 |
Variant Call Information
| Variant Call ID | Type | Repeat Motif | Method | Analysis |
|---|---|---|---|---|
| nssv9175934 | short tandem repeat | (ATAC) 15.75 | Sequencing | Genotyping |
| nssv9175935 | short tandem repeat | (ATAC) 16.75 | Sequencing | Genotyping |
| nssv9175936 | short tandem repeat | (ATAC) 17.75 | Sequencing | Genotyping |
| nssv9175937 | short tandem repeat | (ATAC) 18.75 | Sequencing | Genotyping |
| nssv9175938 | short tandem repeat | (ATAC) 14.75 | Sequencing | Genotyping |
| nssv9175939 | short tandem repeat | (ATAC) 13.75 | Sequencing | Genotyping |
| nssv9175940 | short tandem repeat | (ATAC) 19.75 (ref) | Sequencing | Genotyping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|
| nssv9175934 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 86,296,755 | 86,296,833 |
| nssv9175935 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 86,296,755 | 86,296,833 |
| nssv9175936 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 86,296,755 | 86,296,833 |
| nssv9175937 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 86,296,755 | 86,296,833 |
| nssv9175938 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 86,296,755 | 86,296,833 |
| nssv9175939 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 86,296,755 | 86,296,833 |
| nssv9175940 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 86,296,755 | 86,296,833 |
| nssv9175934 | Submitted genomic | GRCh37 (hg19) | NC_000010.10 | Chr10 | 88,056,512 | 88,056,590 | ||
| nssv9175935 | Submitted genomic | GRCh37 (hg19) | NC_000010.10 | Chr10 | 88,056,512 | 88,056,590 | ||
| nssv9175936 | Submitted genomic | GRCh37 (hg19) | NC_000010.10 | Chr10 | 88,056,512 | 88,056,590 | ||
| nssv9175937 | Submitted genomic | GRCh37 (hg19) | NC_000010.10 | Chr10 | 88,056,512 | 88,056,590 | ||
| nssv9175938 | Submitted genomic | GRCh37 (hg19) | NC_000010.10 | Chr10 | 88,056,512 | 88,056,590 | ||
| nssv9175939 | Submitted genomic | GRCh37 (hg19) | NC_000010.10 | Chr10 | 88,056,512 | 88,056,590 | ||
| nssv9175940 | Submitted genomic | GRCh37 (hg19) | NC_000010.10 | Chr10 | 88,056,512 | 88,056,590 |