nsv1187791

Organisms: Homo sapiens neanderthalensis, Homo sapiens ssp. Denisova, Homo sapiens

Study:nstd112 (Sudmant et al. 2015)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh37 (hg19)

Variant Calls:226
Validation:Not tested
Clinical Assertions: No
Region Size:49,326

Publication(s):Sudmant et al. 2015

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 573 SVs from 49 studies. See in: genome view

Remapped(Score: Perfect):116,913,951-116,963,276

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv1187791	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nsv1187791	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000023.10	ChrX	116,047,919	116,097,244

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Copy number	Other Calls in this Sample and Study
nssv7426554	copy number variation	SAMEA1706756	Sequencing	Read depth	2	14,591
nssv7426555	copy number variation	SAMEA2164595	Sequencing	Read depth	1	14,625
nssv7426556	copy number variation	SAMEA2164384	Sequencing	Read depth	1	14,564
nssv7426557	copy number variation	SAMEA2164391	Sequencing	Read depth	1	14,595
nssv7426558	copy number variation	SAMEA2164386	Sequencing	Read depth	1	14,641
nssv7426559	copy number variation	SAMEA2164390	Sequencing	Read depth	1	14,669
nssv7426560	copy number variation	SAMEA2164160	Sequencing	Read depth	1	14,556
nssv7426561	copy number variation	SAMEA2164164	Sequencing	Read depth	1	14,628
nssv7426562	copy number variation	SAMN03783154	Sequencing	Read depth	1	14,532
nssv7426563	copy number variation	SAMN03783155	Sequencing	Read depth	1	14,583
nssv7426564	copy number variation	SAMN01036798	Sequencing	Read depth	2	14,574
nssv7426565	copy number variation	SAMN01036803	Sequencing	Read depth	1	14,603
nssv7426566	copy number variation	SAMN00779933	Sequencing	Read depth	1	14,586
nssv7426567	copy number variation	SAMN00779943	Sequencing	Read depth	2	14,621
nssv7426568	copy number variation	SAMN03783156	Sequencing	Read depth	2	14,581
nssv7426569	copy number variation	SAMN00001044	Sequencing	Read depth	2	14,529
nssv7426570	copy number variation	SAMN00001060	Sequencing	Read depth	1	14,536
nssv7426571	copy number variation	SAMN03783157	Sequencing	Read depth	2	14,647
nssv7426572	copy number variation	SAMN03783158	Sequencing	Read depth	2	14,668
nssv7426573	copy number variation	SAMEA2164453	Sequencing	Read depth	1	14,636
nssv7426574	copy number variation	SAMN00008078	Sequencing	Read depth	1	14,451
nssv7426575	copy number variation	SAMN00008106	Sequencing	Read depth	1	14,556
nssv7426576	copy number variation	SAMEA2164153	Sequencing	Read depth	1	14,487
nssv7426577	copy number variation	SAMN02603792	Sequencing	Read depth	2	14,497
nssv7426578	copy number variation	SAMN01036781	Sequencing	Read depth	1	14,494
nssv7426579	copy number variation	SAMN01036783	Sequencing	Read depth	2	14,544
nssv7426580	copy number variation	SAMEA2164490	Sequencing	Read depth	1	14,660
nssv7426581	copy number variation	SAMN02603829	Sequencing	Read depth	2	14,639
nssv7426582	copy number variation	SAMN03783159	Sequencing	Read depth	1	14,494
nssv7426583	copy number variation	SAMEA1706724	Sequencing	Read depth	1	14,499
nssv7426584	copy number variation	SAMN02603818	Sequencing	Read depth	1	14,636
nssv7426585	copy number variation	SAMN02603821	Sequencing	Read depth	1	14,590
nssv7426586	copy number variation	SAMN03783160	Sequencing	Read depth	2	14,691
nssv7426587	copy number variation	SAMN03783161	Sequencing	Read depth	2	14,683
nssv7426588	copy number variation	SAMEA2164340	Sequencing	Read depth	1	14,576
nssv7426589	copy number variation	SAMEA2164175	Sequencing	Read depth	1	14,530
nssv7426590	copy number variation	SAMN03783162	Sequencing	Read depth	1	14,644
nssv7426591	copy number variation	SAMEA2164380	Sequencing	Read depth	1	14,669
nssv7426592	copy number variation	SAMN03783163	Sequencing	Read depth	2	14,670
nssv7426593	copy number variation	SAMN02603802	Sequencing	Read depth	2	14,703
nssv7426594	copy number variation	SAMN02603804	Sequencing	Read depth	2	14,669
nssv7426595	copy number variation	SAMN03783164	Sequencing	Read depth	2	14,599
nssv7426596	copy number variation	SAMN03783165	Sequencing	Read depth	2	14,756
nssv7426597	copy number variation	SAMN03783166	Sequencing	Read depth	1	14,670
nssv7426598	copy number variation	SAMN03783167	Sequencing	Read depth	2	14,675
nssv7426599	copy number variation	SAMEA1706748	Sequencing	Read depth	2	14,594
nssv7426600	copy number variation	SAMN03783168	Sequencing	Read depth	2	14,640
nssv7426601	copy number variation	SAMN03783169	Sequencing	Read depth	2	14,665
nssv7426602	copy number variation	SAMEA2164395	Sequencing	Read depth	1	14,620
nssv7426603	copy number variation	SAMN03783170	Sequencing	Read depth	2	14,618
nssv7426604	copy number variation	SAMN03783171	Sequencing	Read depth	2	14,288
nssv7426605	copy number variation	SAMN03783172	Sequencing	Read depth	2	14,778
nssv7426606	copy number variation	SAMN03783173	Sequencing	Read depth	2	14,664
nssv7426607	copy number variation	SAMN03783174	Sequencing	Read depth	1	14,675
nssv7426608	copy number variation	SAMEA1487354	Sequencing	Read depth	2	13,715
nssv7426609	copy number variation	SAMEA1706711	Sequencing	Read depth	2	14,408
nssv7426610	copy number variation	SAMN03783175	Sequencing	Read depth	1	14,638
nssv7426611	copy number variation	SAMN03783176	Sequencing	Read depth	1	14,619
nssv7426612	copy number variation	SAMN03783177	Sequencing	Read depth	1	14,680
nssv7426613	copy number variation	SAMN03783178	Sequencing	Read depth	1	14,666
nssv7426614	copy number variation	SAMN02603795	Sequencing	Read depth	2	14,463
nssv7426615	copy number variation	SAMEA2164252	Sequencing	Read depth	1	14,683
nssv7426616	copy number variation	SAMEA2164535	Sequencing	Read depth	1	14,624
nssv7426617	copy number variation	SAMEA1706737	Sequencing	Read depth	2	14,566
nssv7426618	copy number variation	SAMN03783179	Sequencing	Read depth	2	14,391
nssv7426619	copy number variation	SAMEA1706731	Sequencing	Read depth	2	14,659
nssv7426620	copy number variation	SAMEA1706716	Sequencing	Read depth	2	14,592
nssv7426621	copy number variation	SAMEA2164290	Sequencing	Read depth	1	14,669
nssv7426622	copy number variation	SAMEA2164480	Sequencing	Read depth	1	14,476
nssv7426623	copy number variation	SAMN03783180	Sequencing	Read depth	2	14,565
nssv7426624	copy number variation	SAMN03783181	Sequencing	Read depth	1	14,709
nssv7426625	copy number variation	SAMN03783182	Sequencing	Read depth	2	14,676
nssv7426626	copy number variation	SAMN00001633	Sequencing	Read depth	1	14,518
nssv7426627	copy number variation	SAMN00249816	Sequencing	Read depth	2	14,499
nssv7426628	copy number variation	SAMN00249822	Sequencing	Read depth	1	14,670
nssv7426629	copy number variation	SAMN03783183	Sequencing	Read depth	2	14,720
nssv7426630	copy number variation	SAMN00798868	Sequencing	Read depth	1	14,640
nssv7426631	copy number variation	SAMEA2164540	Sequencing	Read depth	1	14,622
nssv7426632	copy number variation	SAMEA1706757	Sequencing	Read depth	2	14,601
nssv7426633	copy number variation	SAMEA2164448	Sequencing	Read depth	1	14,687
nssv7426634	copy number variation	SAMN03783184	Sequencing	Read depth	2	14,718
nssv7426635	copy number variation	SAMEA1706740	Sequencing	Read depth	2	14,672
nssv7426636	copy number variation	SAMEA2164473	Sequencing	Read depth	1	14,607
nssv7426637	copy number variation	SAMEA2164552	Sequencing	Read depth	1	14,643
nssv7426638	copy number variation	SAMEA2164557	Sequencing	Read depth	1	14,620
nssv7426639	copy number variation	SAMEA1706733	Sequencing	Read depth	2	14,466
nssv7426640	copy number variation	SAMEA2164456	Sequencing	Read depth	1	14,524
nssv7426641	copy number variation	SAMN03783185	Sequencing	Read depth	2	14,639
nssv7426642	copy number variation	SAMEA2164550	Sequencing	Read depth	1	14,592
nssv7426643	copy number variation	SAMN03783186	Sequencing	Read depth	1	14,725
nssv7426644	copy number variation	SAMN03783187	Sequencing	Read depth	2	14,688
nssv7426645	copy number variation	SAMEA2164561	Sequencing	Read depth	1	14,640
nssv7426646	copy number variation	SAMN03783188	Sequencing	Read depth	2	14,511
nssv7426647	copy number variation	SAMEA2164415	Sequencing	Read depth	1	14,657
nssv7426648	copy number variation	SAMEA1706717	Sequencing	Read depth	2	14,656
nssv7426649	copy number variation	SAMEA2164522	Sequencing	Read depth	1	14,637
nssv7426650	copy number variation	SAMN03783189	Sequencing	Read depth	2	14,403
nssv7426651	copy number variation	SAMEA2164485	Sequencing	Read depth	1	14,504
nssv7426652	copy number variation	SAMEA2164489	Sequencing	Read depth	1	14,665
nssv7426653	copy number variation	SAMEA2164437	Sequencing	Read depth	1	14,735

Showing 100 of 226

Variant Call Placement Information

Variant Call ID	Placement Type	Score	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv7426554	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426555	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426556	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426557	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426558	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426559	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426560	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426561	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426562	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426563	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426564	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426565	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426566	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426567	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426568	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426569	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426570	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426571	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426572	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426573	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426574	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426575	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426576	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426577	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426578	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426579	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426580	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426581	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426582	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426583	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426584	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426585	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426586	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426587	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426588	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426589	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426590	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426591	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426592	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426593	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426594	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426595	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426596	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426597	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426598	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426599	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426600	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426601	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426602	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426603	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426604	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426605	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426606	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426607	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426608	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426609	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426610	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426611	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426612	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426613	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426614	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426615	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426616	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426617	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426618	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426619	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426620	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426621	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426622	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426623	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426624	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426625	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426626	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426627	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426628	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426629	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426630	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426631	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426632	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426633	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426634	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426635	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426636	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426637	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426638	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426639	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426640	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426641	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426642	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426643	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426644	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426645	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426646	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426647	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426648	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426649	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426650	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426651	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426652	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276
nssv7426653	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	116,913,951	116,963,276

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dbVar

Database of genomic structural variation

nsv1187791

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Genome View

Variant Region Placement Information

Variant Call Information

Variant Call Placement Information

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant