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dbVar

Database of genomic structural variation

nsv508113

Organism: Homo sapiens

Study:nstd49 (Teague et al. 2010)
Variant Type:sequence alteration
Method Type:Optical mapping
Submitted on:NCBI35 (hg17)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:6,001

Publication(s):Teague et al. 2010

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 146 SVs from 28 studies. See in: genome view

Remapped(Score: Perfect):147,108,694-147,114,694

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Outer Stop
nsv508113	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000002.12	Chr2	147,108,694	147,114,694
nsv508113	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000002.11	Chr2	147,866,262	147,872,262
nsv508113	Submitted genomic		NCBI35 (hg17)	Primary Assembly		NC_000002.9	Chr2	147,699,994	147,705,994

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv621534	sequence alteration	GM15510	Optical mapping	Optical mapping	1,740
nssv622009	sequence alteration	GM10860	Optical mapping	Optical mapping	1,998
nssv624286	sequence alteration	GM18994	Optical mapping	Optical mapping	1,936

Variant Call Placement Information

Variant Call ID	Placement Type	Score	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Outer Stop
nssv621534	Remapped	Perfect	GRCh38.p12	First Pass	NC_000002.12	Chr2	147,108,694	147,114,694
nssv622009	Remapped	Perfect	GRCh38.p12	First Pass	NC_000002.12	Chr2	147,108,694	147,114,694
nssv624286	Remapped	Perfect	GRCh38.p12	First Pass	NC_000002.12	Chr2	147,108,694	147,114,694
nssv621534	Remapped	Perfect	GRCh37.p13	First Pass	NC_000002.11	Chr2	147,866,262	147,872,262
nssv622009	Remapped	Perfect	GRCh37.p13	First Pass	NC_000002.11	Chr2	147,866,262	147,872,262
nssv624286	Remapped	Perfect	GRCh37.p13	First Pass	NC_000002.11	Chr2	147,866,262	147,872,262
nssv621534	Submitted genomic		NCBI35 (hg17)		NC_000002.9	Chr2	147,699,994	147,705,994
nssv622009	Submitted genomic		NCBI35 (hg17)		NC_000002.9	Chr2	147,699,994	147,705,994
nssv624286	Submitted genomic		NCBI35 (hg17)		NC_000002.9	Chr2	147,699,994	147,705,994

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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