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dbVar

Database of genomic structural variation

nsv6132725

Organism: Homo sapiens

Study:nstd213 (Pham et al. 2021)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh37

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:36,325

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1055 SVs from 90 studies. See in: genome view

Remapped(Score: Perfect):57,178,406-57,214,730

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv6132725	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000013.11	Chr13	57,178,406	57,178,409	57,214,727	57,214,730
nsv6132725	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000013.10	Chr13	57,752,540	57,752,543	57,788,861	57,788,864

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv17679690	deletion	SAMN20524662	Sequencing	Paired-end mapping	1,603
nssv17682618	deletion	SAMN20524655	Sequencing	Paired-end mapping	909
nssv17683408	deletion	SAMN20524661	Sequencing	Paired-end mapping	62

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv17679690	Remapped	Perfect	NC_000013.11:g.(57 178406_57178409)_( 57214727_57214730) del	GRCh38.p12	First Pass	NC_000013.11	Chr13	57,178,406	57,178,409	57,214,727	57,214,730
nssv17682618	Remapped	Perfect	NC_000013.11:g.(57 178406_57178409)_( 57214727_57214730) del	GRCh38.p12	First Pass	NC_000013.11	Chr13	57,178,406	57,178,409	57,214,727	57,214,730
nssv17683408	Remapped	Perfect	NC_000013.11:g.(57 178406_57178409)_( 57214727_57214730) del	GRCh38.p12	First Pass	NC_000013.11	Chr13	57,178,406	57,178,409	57,214,727	57,214,730
nssv17679690	Submitted genomic		NC_000013.10:g.(57 752540_57752543)_( 57788861_57788864) del	GRCh37 (hg19)		NC_000013.10	Chr13	57,752,540	57,752,543	57,788,861	57,788,864
nssv17682618	Submitted genomic		NC_000013.10:g.(57 752540_57752543)_( 57788861_57788864) del	GRCh37 (hg19)		NC_000013.10	Chr13	57,752,540	57,752,543	57,788,861	57,788,864
nssv17683408	Submitted genomic		NC_000013.10:g.(57 752540_57752543)_( 57788861_57788864) del	GRCh37 (hg19)		NC_000013.10	Chr13	57,752,540	57,752,543	57,788,861	57,788,864

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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