esv3584906
- Organism: Homo sapiens
- Study:estd213 (Mokhtar et al. 2014)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:93,606
- Publication(s):Mokhtar et al. 2014
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1053 SVs from 81 studies. See in: genome view
Overlapping variant regions from other studies: 1059 SVs from 82 studies. See in: genome view
Overlapping variant regions from other studies: 356 SVs from 26 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| esv3584906 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000009.12 | Chr9 | 28,756,346 | 28,849,951 |
| esv3584906 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000009.11 | Chr9 | 28,756,344 | 28,849,949 |
| esv3584906 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000009.10 | Chr9 | 28,746,344 | 28,839,949 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| essv9838769 | copy number loss | OA007 | SNP array | Probe signal intensity | 24 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| essv9838769 | Remapped | Perfect | NC_000009.12:g.(?_ 28756346)_(2884995 1_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 28,756,346 | 28,849,951 |
| essv9838769 | Remapped | Perfect | NC_000009.11:g.(?_ 28756344)_(2884994 9_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 28,756,344 | 28,849,949 |
| essv9838769 | Submitted genomic | NC_000009.10:g.(?_ 28746344)_(2883994 9_?)del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 28,746,344 | 28,839,949 |