esv3584784
- Organism: Homo sapiens
- Study:estd213 (Mokhtar et al. 2014)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:19
- Validation:Not tested
- Clinical Assertions: No
- Region Size:4,825
- Publication(s):Mokhtar et al. 2014
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 348 SVs from 69 studies. See in: genome view
Overlapping variant regions from other studies: 348 SVs from 69 studies. See in: genome view
Overlapping variant regions from other studies: 147 SVs from 23 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| esv3584784 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 37,940,613 | 37,945,437 |
| esv3584784 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000003.11 | Chr3 | 37,982,104 | 37,986,928 |
| esv3584784 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000003.10 | Chr3 | 37,957,108 | 37,961,932 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| essv9837978 | copy number loss | OA074 | SNP array | Probe signal intensity | 24 |
| essv9837980 | copy number loss | OA072 | SNP array | Probe signal intensity | 32 |
| essv9837981 | copy number loss | OA064 | SNP array | Probe signal intensity | 28 |
| essv9837982 | copy number loss | OA054 | SNP array | Probe signal intensity | 30 |
| essv9837983 | copy number loss | OA053 | SNP array | Probe signal intensity | 35 |
| essv9837984 | copy number loss | OA020 | SNP array | Probe signal intensity | 22 |
| essv9837985 | copy number loss | OA018b | SNP array | Probe signal intensity | 24 |
| essv9837986 | copy number loss | OA017 | SNP array | Probe signal intensity | 22 |
| essv9837987 | copy number loss | OA016 | SNP array | Probe signal intensity | 31 |
| essv9837988 | copy number loss | OA013 | SNP array | Probe signal intensity | 31 |
| essv9837989 | copy number loss | OA012 | SNP array | Probe signal intensity | 29 |
| essv9837991 | copy number loss | OA0039 | SNP array | Probe signal intensity | 24 |
| essv9837992 | copy number loss | OA003 | SNP array | Probe signal intensity | 19 |
| essv9837993 | copy number loss | KSM006 | SNP array | Probe signal intensity | 44 |
| essv9837994 | copy number loss | KSF024 | SNP array | Probe signal intensity | 42 |
| essv9837995 | copy number loss | KSF008 | SNP array | Probe signal intensity | 54 |
| essv9837996 | copy number loss | KSF005 | SNP array | Probe signal intensity | 45 |
| essv9837997 | copy number loss | B4 | SNP array | Probe signal intensity | 46 |
| essv9837998 | copy number loss | 3LK | SNP array | Probe signal intensity | 33 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| essv9837978 | Remapped | Perfect | NC_000003.12:g.(?_ 37940613)_(3794543 7_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 37,940,613 | 37,945,437 |
| essv9837980 | Remapped | Perfect | NC_000003.12:g.(?_ 37940613)_(3794543 7_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 37,940,613 | 37,945,437 |
| essv9837981 | Remapped | Perfect | NC_000003.12:g.(?_ 37940613)_(3794543 7_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 37,940,613 | 37,945,437 |
| essv9837982 | Remapped | Perfect | NC_000003.12:g.(?_ 37940613)_(3794543 7_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 37,940,613 | 37,945,437 |
| essv9837983 | Remapped | Perfect | NC_000003.12:g.(?_ 37940613)_(3794543 7_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 37,940,613 | 37,945,437 |
| essv9837984 | Remapped | Perfect | NC_000003.12:g.(?_ 37940613)_(3794543 7_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 37,940,613 | 37,945,437 |
| essv9837985 | Remapped | Perfect | NC_000003.12:g.(?_ 37940613)_(3794543 7_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 37,940,613 | 37,945,437 |
| essv9837986 | Remapped | Perfect | NC_000003.12:g.(?_ 37940613)_(3794543 7_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 37,940,613 | 37,945,437 |
| essv9837987 | Remapped | Perfect | NC_000003.12:g.(?_ 37940613)_(3794543 7_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 37,940,613 | 37,945,437 |
| essv9837988 | Remapped | Perfect | NC_000003.12:g.(?_ 37940613)_(3794543 7_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 37,940,613 | 37,945,437 |
| essv9837989 | Remapped | Perfect | NC_000003.12:g.(?_ 37940613)_(3794543 7_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 37,940,613 | 37,945,437 |
| essv9837991 | Remapped | Perfect | NC_000003.12:g.(?_ 37940613)_(3794543 7_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 37,940,613 | 37,945,437 |
| essv9837992 | Remapped | Perfect | NC_000003.12:g.(?_ 37940613)_(3794543 7_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 37,940,613 | 37,945,437 |
| essv9837993 | Remapped | Perfect | NC_000003.12:g.(?_ 37940613)_(3794543 7_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 37,940,613 | 37,945,437 |
| essv9837994 | Remapped | Perfect | NC_000003.12:g.(?_ 37940613)_(3794543 7_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 37,940,613 | 37,945,437 |
| essv9837995 | Remapped | Perfect | NC_000003.12:g.(?_ 37940613)_(3794543 7_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 37,940,613 | 37,945,437 |
| essv9837996 | Remapped | Perfect | NC_000003.12:g.(?_ 37940613)_(3794543 7_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 37,940,613 | 37,945,437 |
| essv9837997 | Remapped | Perfect | NC_000003.12:g.(?_ 37940613)_(3794543 7_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 37,940,613 | 37,945,437 |
| essv9837998 | Remapped | Perfect | NC_000003.12:g.(?_ 37940613)_(3794543 7_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 37,940,613 | 37,945,437 |
| essv9837978 | Remapped | Perfect | NC_000003.11:g.(?_ 37982104)_(3798692 8_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 37,982,104 | 37,986,928 |
| essv9837980 | Remapped | Perfect | NC_000003.11:g.(?_ 37982104)_(3798692 8_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 37,982,104 | 37,986,928 |
| essv9837981 | Remapped | Perfect | NC_000003.11:g.(?_ 37982104)_(3798692 8_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 37,982,104 | 37,986,928 |
| essv9837982 | Remapped | Perfect | NC_000003.11:g.(?_ 37982104)_(3798692 8_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 37,982,104 | 37,986,928 |
| essv9837983 | Remapped | Perfect | NC_000003.11:g.(?_ 37982104)_(3798692 8_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 37,982,104 | 37,986,928 |
| essv9837984 | Remapped | Perfect | NC_000003.11:g.(?_ 37982104)_(3798692 8_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 37,982,104 | 37,986,928 |
| essv9837985 | Remapped | Perfect | NC_000003.11:g.(?_ 37982104)_(3798692 8_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 37,982,104 | 37,986,928 |
| essv9837986 | Remapped | Perfect | NC_000003.11:g.(?_ 37982104)_(3798692 8_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 37,982,104 | 37,986,928 |
| essv9837987 | Remapped | Perfect | NC_000003.11:g.(?_ 37982104)_(3798692 8_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 37,982,104 | 37,986,928 |
| essv9837988 | Remapped | Perfect | NC_000003.11:g.(?_ 37982104)_(3798692 8_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 37,982,104 | 37,986,928 |
| essv9837989 | Remapped | Perfect | NC_000003.11:g.(?_ 37982104)_(3798692 8_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 37,982,104 | 37,986,928 |
| essv9837991 | Remapped | Perfect | NC_000003.11:g.(?_ 37982104)_(3798692 8_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 37,982,104 | 37,986,928 |
| essv9837992 | Remapped | Perfect | NC_000003.11:g.(?_ 37982104)_(3798692 8_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 37,982,104 | 37,986,928 |
| essv9837993 | Remapped | Perfect | NC_000003.11:g.(?_ 37982104)_(3798692 8_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 37,982,104 | 37,986,928 |
| essv9837994 | Remapped | Perfect | NC_000003.11:g.(?_ 37982104)_(3798692 8_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 37,982,104 | 37,986,928 |
| essv9837995 | Remapped | Perfect | NC_000003.11:g.(?_ 37982104)_(3798692 8_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 37,982,104 | 37,986,928 |
| essv9837996 | Remapped | Perfect | NC_000003.11:g.(?_ 37982104)_(3798692 8_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 37,982,104 | 37,986,928 |
| essv9837997 | Remapped | Perfect | NC_000003.11:g.(?_ 37982104)_(3798692 8_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 37,982,104 | 37,986,928 |
| essv9837998 | Remapped | Perfect | NC_000003.11:g.(?_ 37982104)_(3798692 8_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 37,982,104 | 37,986,928 |
| essv9837978 | Submitted genomic | NC_000003.10:g.(?_ 37957108)_(3796193 2_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 37,957,108 | 37,961,932 | ||
| essv9837980 | Submitted genomic | NC_000003.10:g.(?_ 37957108)_(3796193 2_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 37,957,108 | 37,961,932 | ||
| essv9837981 | Submitted genomic | NC_000003.10:g.(?_ 37957108)_(3796193 2_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 37,957,108 | 37,961,932 | ||
| essv9837982 | Submitted genomic | NC_000003.10:g.(?_ 37957108)_(3796193 2_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 37,957,108 | 37,961,932 | ||
| essv9837983 | Submitted genomic | NC_000003.10:g.(?_ 37957108)_(3796193 2_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 37,957,108 | 37,961,932 | ||
| essv9837984 | Submitted genomic | NC_000003.10:g.(?_ 37957108)_(3796193 2_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 37,957,108 | 37,961,932 | ||
| essv9837985 | Submitted genomic | NC_000003.10:g.(?_ 37957108)_(3796193 2_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 37,957,108 | 37,961,932 | ||
| essv9837986 | Submitted genomic | NC_000003.10:g.(?_ 37957108)_(3796193 2_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 37,957,108 | 37,961,932 | ||
| essv9837987 | Submitted genomic | NC_000003.10:g.(?_ 37957108)_(3796193 2_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 37,957,108 | 37,961,932 | ||
| essv9837988 | Submitted genomic | NC_000003.10:g.(?_ 37957108)_(3796193 2_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 37,957,108 | 37,961,932 | ||
| essv9837989 | Submitted genomic | NC_000003.10:g.(?_ 37957108)_(3796193 2_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 37,957,108 | 37,961,932 | ||
| essv9837991 | Submitted genomic | NC_000003.10:g.(?_ 37957108)_(3796193 2_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 37,957,108 | 37,961,932 | ||
| essv9837992 | Submitted genomic | NC_000003.10:g.(?_ 37957108)_(3796193 2_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 37,957,108 | 37,961,932 | ||
| essv9837993 | Submitted genomic | NC_000003.10:g.(?_ 37957108)_(3796193 2_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 37,957,108 | 37,961,932 | ||
| essv9837994 | Submitted genomic | NC_000003.10:g.(?_ 37957108)_(3796193 2_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 37,957,108 | 37,961,932 | ||
| essv9837995 | Submitted genomic | NC_000003.10:g.(?_ 37957108)_(3796193 2_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 37,957,108 | 37,961,932 | ||
| essv9837996 | Submitted genomic | NC_000003.10:g.(?_ 37957108)_(3796193 2_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 37,957,108 | 37,961,932 | ||
| essv9837997 | Submitted genomic | NC_000003.10:g.(?_ 37957108)_(3796193 2_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 37,957,108 | 37,961,932 | ||
| essv9837998 | Submitted genomic | NC_000003.10:g.(?_ 37957108)_(3796193 2_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 37,957,108 | 37,961,932 |