nstd8 (Perry et al. 2008b)
- Organism:
- Chimpanzee, Human
- Study Type:
- Control Set
- Submitter:
- Charles Lee
- Description:
- In this study, we have used array-based comparative genomic hybridization (aCGH) on a human whole-genome tile-path (WGTP) platform comprised of 28,708 large-insert DNA clones to identify CNVs among the genomes of 30 unrelated chimpanzees (Pan troglodytes) and 30 unrelated humans from Africa. See Variant Summary counts for nstd8 in dbVar Variant Summary.
- Publication(s):
- Perry et al. 2008
Detailed Information: Download 791 Variant Regions, Download 4501 Variant Calls, Download Both, FTP
Variant Summary
Assembly used for analysis:
Remapped: GRCh38.p12 (hg38)
Remapped: GRCh37.p13 (hg19)
Submitted: NCBI36 (hg18)
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.11 | Chr1 | 69 | 368 | Remapped | NC_000001.11 |
| NC_000002.12 | Chr2 | 44 | 212 | Remapped | NC_000002.12 |
| NC_000003.12 | Chr3 | 47 | 135 | Remapped | NC_000003.12 |
| NC_000004.12 | Chr4 | 55 | 362 | Remapped | NC_000004.12 |
| NC_000005.10 | Chr5 | 60 | 275 | Remapped | NC_000005.10 |
| NC_000006.12 | Chr6 | 51 | 299 | Remapped | NC_000006.12 |
| NC_000007.14 | Chr7 | 64 | 427 | Remapped | NC_000007.14 |
| NC_000008.11 | Chr8 | 38 | 241 | Remapped | NC_000008.11 |
| NC_000009.12 | Chr9 | 30 | 139 | Remapped | NC_000009.12 |
| NC_000010.11 | Chr10 | 30 | 142 | Remapped | NC_000010.11 |
| NC_000011.10 | Chr11 | 43 | 200 | Remapped | NC_000011.10 |
| NC_000012.12 | Chr12 | 40 | 117 | Remapped | NC_000012.12 |
| NC_000013.11 | Chr13 | 13 | 50 | Remapped | NC_000013.11 |
| NC_000014.9 | Chr14 | 14 | 102 | Remapped | NC_000014.9 |
| NC_000015.10 | Chr15 | 35 | 272 | Remapped | NC_000015.10 |
| NC_000016.10 | Chr16 | 36 | 420 | Remapped | NC_000016.10 |
| NC_000017.11 | Chr17 | 31 | 224 | Remapped | NC_000017.11 |
| NC_000018.10 | Chr18 | 14 | 28 | Remapped | NC_000018.10 |
| NC_000019.10 | Chr19 | 22 | 165 | Remapped | NC_000019.10 |
| NC_000020.11 | Chr20 | 17 | 63 | Remapped | NC_000020.11 |
| NC_000021.9 | Chr21 | 9 | 38 | Remapped | NC_000021.9 |
| NC_000022.11 | Chr22 | 18 | 93 | Remapped | NC_000022.11 |
| NT_187523.1 | Chr2|NT_187523.1 | 1 | 15 | Remapped | NT_187523.1 |
| NT_187647.1 | Chr2|NT_187647.1 | 1 | 15 | Remapped | NT_187647.1 |
| NT_187648.1 | Chr2|NT_187648.1 | 0 | 26 | Remapped | NT_187648.1 |
| NT_187678.1 | Chr3|NT_187678.1 | 0 | 8 | Remapped | NT_187678.1 |
| NT_187688.1 | Chr3|NT_187688.1 | 0 | 8 | Remapped | NT_187688.1 |
| NT_187689.1 | Chr3|NT_187689.1 | 0 | 8 | Remapped | NT_187689.1 |
| NT_187690.1 | Chr3|NT_187690.1 | 0 | 8 | Remapped | NT_187690.1 |
| NT_187691.1 | Chr3|NT_187691.1 | 0 | 8 | Remapped | NT_187691.1 |
| NT_187532.1 | Chr3|NT_187532.1 | 0 | 8 | Remapped | NT_187532.1 |
| NT_187536.1 | Chr3|NT_187536.1 | 1 | 4 | Remapped | NT_187536.1 |
| NT_187539.1 | Chr3|NT_187539.1 | 1 | 4 | Remapped | NT_187539.1 |
| NT_187649.1 | Chr3|NT_187649.1 | 0 | 8 | Remapped | NT_187649.1 |
| NT_187679.1 | Chr4|NT_187679.1 | 2 | 38 | Remapped | NT_187679.1 |
| NT_187543.1 | Chr4|NT_187543.1 | 1 | 25 | Remapped | NT_187543.1 |
| NT_187650.1 | Chr4|NT_187650.1 | 1 | 25 | Remapped | NT_187650.1 |
| NW_003315915.1 | Chr4|NW_003315915.1 | 1 | 2 | Remapped | NW_003315915.1 |
| NT_187651.1 | Chr5|NT_187651.1 | 0 | 19 | Remapped | NT_187651.1 |
| NW_003571036.1 | Chr5|NW_003571036.1 | 1 | 1 | Remapped | NW_003571036.1 |
| NW_016107297.1 | Chr5|NW_016107297.1 | 1 | 8 | Remapped | NW_016107297.1 |
| NT_167246.2 | Chr6|NT_167246.2 | 8 | 68 | Remapped | NT_167246.2 |
| NT_167247.2 | Chr6|NT_167247.2 | 5 | 29 | Remapped | NT_167247.2 |
| NT_167249.2 | Chr6|NT_167249.2 | 7 | 43 | Remapped | NT_167249.2 |
| NT_167245.2 | Chr6|NT_167245.2 | 4 | 16 | Remapped | NT_167245.2 |
| NT_187553.1 | Chr6|NT_187553.1 | 1 | 2 | Remapped | NT_187553.1 |
| NW_013171802.1 | Chr6|NW_013171802.1 | 1 | 1 | Remapped | NW_013171802.1 |
| NT_187558.1 | Chr7|NT_187558.1 | 2 | 16 | Remapped | NT_187558.1 |
| NT_187562.1 | Chr7|NT_187562.1 | 2 | 9 | Remapped | NT_187562.1 |
| NT_187564.1 | Chr7|NT_187564.1 | 1 | 2 | Remapped | NT_187564.1 |
| NT_187653.1 | Chr7|NT_187653.1 | 2 | 16 | Remapped | NT_187653.1 |
| NW_018654714.1 | Chr7|NW_018654714.1 | 0 | 12 | Remapped | NW_018654714.1 |
| NW_018654715.1 | Chr7|NW_018654715.1 | 0 | 1 | Remapped | NW_018654715.1 |
| NT_187680.1 | Chr8|NT_187680.1 | 1 | 1 | Remapped | NT_187680.1 |
| NT_187566.1 | Chr8|NT_187566.1 | 1 | 19 | Remapped | NT_187566.1 |
| NT_187576.1 | Chr8|NT_187576.1 | 1 | 2 | Remapped | NT_187576.1 |
| NT_187577.1 | Chr8|NT_187577.1 | 1 | 1 | Remapped | NT_187577.1 |
| NT_187654.1 | Chr8|NT_187654.1 | 1 | 1 | Remapped | NT_187654.1 |
| NW_018654717.1 | Chr8|NW_018654717.1 | 0 | 13 | Remapped | NW_018654717.1 |
| NT_187681.1 | Chr11|NT_187681.1 | 2 | 8 | Remapped | NT_187681.1 |
| NT_187581.1 | Chr11|NT_187581.1 | 1 | 1 | Remapped | NT_187581.1 |
| NT_187585.1 | Chr11|NT_187585.1 | 1 | 1 | Remapped | NT_187585.1 |
| NW_017363816.1 | Chr11|NW_017363816.1 | 1 | 4 | Remapped | NW_017363816.1 |
| NT_187658.1 | Chr12|NT_187658.1 | 1 | 8 | Remapped | NT_187658.1 |
| NT_187587.1 | Chr12|NT_187587.1 | 1 | 4 | Remapped | NT_187587.1 |
| NW_003571049.1 | Chr12|NW_003571049.1 | 2 | 18 | Remapped | NW_003571049.1 |
| NW_003571050.1 | Chr12|NW_003571050.1 | 0 | 2 | Remapped | NW_003571050.1 |
| NW_011332699.1 | Chr13|NW_011332699.1 | 1 | 12 | Remapped | NW_011332699.1 |
| NT_187659.1 | Chr15|NT_187659.1 | 0 | 3 | Remapped | NT_187659.1 |
| NT_187660.1 | Chr15|NT_187660.1 | 2 | 11 | Remapped | NT_187660.1 |
| NT_187603.1 | Chr15|NT_187603.1 | 0 | 3 | Remapped | NT_187603.1 |
| NT_187606.1 | Chr15|NT_187606.1 | 2 | 23 | Remapped | NT_187606.1 |
| NW_003315943.1 | Chr15|NW_003315943.1 | 1 | 4 | Remapped | NW_003315943.1 |
| NW_011332701.1 | Chr15|NW_011332701.1 | 2 | 11 | Remapped | NW_011332701.1 |
| NT_187607.1 | Chr16|NT_187607.1 | 2 | 39 | Remapped | NT_187607.1 |
| NW_017852933.1 | Chr16|NW_017852933.1 | 2 | 6 | Remapped | NW_017852933.1 |
| NT_187661.1 | Chr17|NT_187661.1 | 0 | 2 | Remapped | NT_187661.1 |
| NT_187663.1 | Chr17|NT_187663.1 | 2 | 15 | Remapped | NT_187663.1 |
| NT_167251.2 | Chr17|NT_167251.2 | 2 | 15 | Remapped | NT_167251.2 |
| NT_187612.1 | Chr17|NT_187612.1 | 0 | 1 | Remapped | NT_187612.1 |
| NT_187614.1 | Chr17|NT_187614.1 | 3 | 58 | Remapped | NT_187614.1 |
| NW_017363817.1 | Chr17|NW_017363817.1 | 1 | 1 | Remapped | NW_017363817.1 |
| NW_017363819.1 | Chr17|NW_017363819.1 | 1 | 25 | Remapped | NW_017363819.1 |
| NT_187693.1 | Chr19|NT_187693.1 | 3 | 24 | Remapped | NT_187693.1 |
| NW_003571061.2 | Chr19|NW_003571061.2 | 1 | 3 | Remapped | NW_003571061.2 |
| NW_003571057.2 | Chr19|NW_003571057.2 | 0 | 2 | Remapped | NW_003571057.2 |
| NW_003571058.2 | Chr19|NW_003571058.2 | 0 | 2 | Remapped | NW_003571058.2 |
| NW_003571059.2 | Chr19|NW_003571059.2 | 0 | 2 | Remapped | NW_003571059.2 |
| NW_003571060.1 | Chr19|NW_003571060.1 | 1 | 3 | Remapped | NW_003571060.1 |
| NW_003571056.2 | Chr19|NW_003571056.2 | 0 | 2 | Remapped | NW_003571056.2 |
| NW_003571055.2 | Chr19|NW_003571055.2 | 1 | 3 | Remapped | NW_003571055.2 |
| NW_003571054.1 | Chr19|NW_003571054.1 | 1 | 3 | Remapped | NW_003571054.1 |
| NW_009646206.1 | Chr19|NW_009646206.1 | 1 | 1 | Remapped | NW_009646206.1 |
| NT_187623.1 | Chr20|NT_187623.1 | 2 | 3 | Remapped | NT_187623.1 |
| NT_187624.1 | Chr20|NT_187624.1 | 1 | 5 | Remapped | NT_187624.1 |
| NW_015148969.1 | Chr22|NW_015148969.1 | 1 | 1 | Remapped | NW_015148969.1 |
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.10 | Chr1 | 71 | 404 | Remapped | NC_000001.10 |
| NC_000002.11 | Chr2 | 44 | 212 | Remapped | NC_000002.11 |
| NC_000003.11 | Chr3 | 47 | 135 | Remapped | NC_000003.11 |
| NC_000004.11 | Chr4 | 55 | 362 | Remapped | NC_000004.11 |
| NC_000005.9 | Chr5 | 60 | 275 | Remapped | NC_000005.9 |
| NC_000006.11 | Chr6 | 51 | 299 | Remapped | NC_000006.11 |
| NC_000007.13 | Chr7 | 63 | 406 | Remapped | NC_000007.13 |
| NC_000008.10 | Chr8 | 38 | 241 | Remapped | NC_000008.10 |
| NC_000009.11 | Chr9 | 35 | 152 | Remapped | NC_000009.11 |
| NC_000010.10 | Chr10 | 33 | 183 | Remapped | NC_000010.10 |
| NC_000011.9 | Chr11 | 43 | 200 | Remapped | NC_000011.9 |
| NC_000012.11 | Chr12 | 40 | 116 | Remapped | NC_000012.11 |
| NC_000013.10 | Chr13 | 13 | 50 | Remapped | NC_000013.10 |
| NC_000014.8 | Chr14 | 14 | 102 | Remapped | NC_000014.8 |
| NC_000015.9 | Chr15 | 37 | 297 | Remapped | NC_000015.9 |
| NC_000016.9 | Chr16 | 35 | 402 | Remapped | NC_000016.9 |
| NC_000017.10 | Chr17 | 30 | 222 | Remapped | NC_000017.10 |
| NC_000018.9 | Chr18 | 14 | 28 | Remapped | NC_000018.9 |
| NC_000019.9 | Chr19 | 22 | 163 | Remapped | NC_000019.9 |
| NC_000020.10 | Chr20 | 16 | 62 | Remapped | NC_000020.10 |
| NC_000021.8 | Chr21 | 9 | 38 | Remapped | NC_000021.8 |
| NC_000022.10 | Chr22 | 17 | 92 | Remapped | NC_000022.10 |
| NW_003871055.3 | Chr1|NW_003871055.3 | 3 | 24 | Remapped | NW_003871055.3 |
| NW_003871056.3 | Chr1|NW_003871056.3 | 2 | 14 | Remapped | NW_003871056.3 |
| NW_003315915.1 | Chr4|NW_003315915.1 | 1 | 2 | Remapped | NW_003315915.1 |
| NW_003571036.1 | Chr5|NW_003571036.1 | 1 | 1 | Remapped | NW_003571036.1 |
| NW_004775428.1 | Chr5|NW_004775428.1 | 2 | 3 | Remapped | NW_004775428.1 |
| NT_167245.1 | Chr6|NT_167245.1 | 4 | 16 | Remapped | NT_167245.1 |
| NT_167246.1 | Chr6|NT_167246.1 | 8 | 69 | Remapped | NT_167246.1 |
| NT_167247.1 | Chr6|NT_167247.1 | 5 | 29 | Remapped | NT_167247.1 |
| NT_167249.1 | Chr6|NT_167249.1 | 7 | 43 | Remapped | NT_167249.1 |
| NW_003571039.1 | Chr7|NW_003571039.1 | 1 | 3 | Remapped | NW_003571039.1 |
| NW_003571040.1 | Chr7|NW_003571040.1 | 2 | 9 | Remapped | NW_003571040.1 |
| NW_003871064.1 | Chr7|NW_003871064.1 | 2 | 34 | Remapped | NW_003871064.1 |
| NW_004775430.1 | Chr7|NW_004775430.1 | 1 | 2 | Remapped | NW_004775430.1 |
| NW_003571042.1 | Chr8|NW_003571042.1 | 1 | 2 | Remapped | NW_003571042.1 |
| NW_003871066.2 | Chr8|NW_003871066.2 | 1 | 6 | Remapped | NW_003871066.2 |
| NW_003871067.1 | Chr9|NW_003871067.1 | 1 | 2 | Remapped | NW_003871067.1 |
| NW_003871068.1 | Chr10|NW_003871068.1 | 1 | 57 | Remapped | NW_003871068.1 |
| NW_003571045.1 | Chr11|NW_003571045.1 | 1 | 4 | Remapped | NW_003571045.1 |
| NW_003571048.1 | Chr12|NW_003571048.1 | 2 | 18 | Remapped | NW_003571048.1 |
| NW_003315943.1 | Chr15|NW_003315943.1 | 1 | 3 | Remapped | NW_003315943.1 |
| NT_167251.1 | Chr17|NT_167251.1 | 2 | 15 | Remapped | NT_167251.1 |
| NW_003315948.2 | Chr17|NW_003315948.2 | 1 | 2 | Remapped | NW_003315948.2 |
| NW_003315949.1 | Chr17|NW_003315949.1 | 1 | 27 | Remapped | NW_003315949.1 |
| NW_003871088.1 | Chr17|NW_003871088.1 | 1 | 1 | Remapped | NW_003871088.1 |
| NW_003571061.1 | Chr19|NW_003571061.1 | 0 | 2 | Remapped | NW_003571061.1 |
| NW_004166865.1 | Chr19|NW_004166865.1 | 2 | 21 | Remapped | NW_004166865.1 |
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.9 | Chr1 | 71 | 404 | Submitted | NC_000001.9 |
| NC_000002.10 | Chr2 | 44 | 212 | Submitted | NC_000002.10 |
| NC_000003.10 | Chr3 | 47 | 135 | Submitted | NC_000003.10 |
| NC_000004.10 | Chr4 | 55 | 365 | Submitted | NC_000004.10 |
| NC_000005.8 | Chr5 | 60 | 275 | Submitted | NC_000005.8 |
| NC_000006.10 | Chr6 | 51 | 299 | Submitted | NC_000006.10 |
| NC_000007.12 | Chr7 | 63 | 410 | Submitted | NC_000007.12 |
| NC_000008.9 | Chr8 | 38 | 241 | Submitted | NC_000008.9 |
| NC_000009.10 | Chr9 | 35 | 152 | Submitted | NC_000009.10 |
| NC_000010.9 | Chr10 | 34 | 187 | Submitted | NC_000010.9 |
| NC_000011.8 | Chr11 | 43 | 200 | Submitted | NC_000011.8 |
| NC_000012.10 | Chr12 | 40 | 117 | Submitted | NC_000012.10 |
| NC_000013.9 | Chr13 | 13 | 50 | Submitted | NC_000013.9 |
| NC_000014.7 | Chr14 | 14 | 102 | Submitted | NC_000014.7 |
| NC_000015.8 | Chr15 | 37 | 297 | Submitted | NC_000015.8 |
| NC_000016.8 | Chr16 | 35 | 402 | Submitted | NC_000016.8 |
| NC_000017.9 | Chr17 | 31 | 247 | Submitted | NC_000017.9 |
| NC_000018.8 | Chr18 | 14 | 28 | Submitted | NC_000018.8 |
| NC_000019.8 | Chr19 | 24 | 186 | Submitted | NC_000019.8 |
| NC_000020.9 | Chr20 | 16 | 62 | Submitted | NC_000020.9 |
| NC_000021.7 | Chr21 | 9 | 38 | Submitted | NC_000021.7 |
| NC_000022.9 | Chr22 | 17 | 92 | Submitted | NC_000022.9 |
| Variant Region remap status | Variant Call remap status | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
| NC_000001.9 | Chr1 | 71 | 57 | 6 | 5 | 0 | 3 | 404 | 286 | 37 | 55 | 0 | 26 |
| NC_000002.10 | Chr2 | 44 | 37 | 1 | 6 | 0 | 0 | 212 | 184 | 2 | 26 | 0 | 0 |
| NC_000003.10 | Chr3 | 47 | 45 | 2 | 0 | 0 | 0 | 135 | 108 | 27 | 0 | 0 | 0 |
| NC_000004.10 | Chr4 | 55 | 48 | 4 | 2 | 0 | 1 | 365 | 336 | 9 | 15 | 3 | 2 |
| NC_000005.8 | Chr5 | 60 | 55 | 0 | 2 | 0 | 3 | 275 | 229 | 0 | 42 | 0 | 4 |
| NC_000006.10 | Chr6 | 51 | 38 | 3 | 0 | 0 | 10 | 299 | 196 | 25 | 0 | 0 | 78 |
| NC_000007.12 | Chr7 | 63 | 49 | 2 | 6 | 0 | 6 | 410 | 282 | 37 | 47 | 0 | 44 |
| NC_000008.9 | Chr8 | 38 | 23 | 7 | 6 | 0 | 2 | 241 | 145 | 35 | 53 | 0 | 8 |
| NC_000009.10 | Chr9 | 35 | 29 | 1 | 4 | 0 | 1 | 152 | 137 | 5 | 8 | 0 | 2 |
| NC_000010.9 | Chr10 | 34 | 29 | 0 | 3 | 1 | 1 | 187 | 105 | 1 | 20 | 4 | 57 |
| NC_000011.8 | Chr11 | 43 | 42 | 0 | 0 | 0 | 1 | 200 | 196 | 0 | 0 | 0 | 4 |
| NC_000012.10 | Chr12 | 40 | 37 | 0 | 1 | 0 | 2 | 117 | 98 | 0 | 2 | 0 | 17 |
| NC_000013.9 | Chr13 | 13 | 13 | 0 | 0 | 0 | 0 | 50 | 50 | 0 | 0 | 0 | 0 |
| NC_000014.7 | Chr14 | 14 | 13 | 1 | 0 | 0 | 0 | 102 | 77 | 25 | 0 | 0 | 0 |
| NC_000015.8 | Chr15 | 37 | 28 | 4 | 4 | 0 | 1 | 297 | 207 | 52 | 35 | 0 | 3 |
| NC_000016.8 | Chr16 | 35 | 32 | 1 | 0 | 0 | 2 | 402 | 389 | 1 | 0 | 0 | 12 |
| NC_000017.9 | Chr17 | 31 | 17 | 6 | 2 | 1 | 5 | 247 | 120 | 52 | 7 | 24 | 44 |
| NC_000018.8 | Chr18 | 14 | 14 | 0 | 0 | 0 | 0 | 28 | 28 | 0 | 0 | 0 | 0 |
| NC_000019.8 | Chr19 | 24 | 20 | 1 | 3 | 0 | 0 | 186 | 160 | 3 | 23 | 0 | 0 |
| NC_000020.9 | Chr20 | 16 | 15 | 0 | 1 | 0 | 0 | 62 | 61 | 0 | 1 | 0 | 0 |
| NC_000021.7 | Chr21 | 9 | 9 | 0 | 0 | 0 | 0 | 38 | 38 | 0 | 0 | 0 | 0 |
| NC_000022.9 | Chr22 | 17 | 15 | 1 | 1 | 0 | 0 | 92 | 69 | 1 | 22 | 0 | 0 |
| Variant Region remap status | Variant Call remap status | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
| NC_000001.9 | Chr1 | 71 | 52 | 9 | 7 | 2 | 1 | 404 | 255 | 37 | 71 | 23 | 18 |
| NC_000002.10 | Chr2 | 44 | 37 | 3 | 3 | 0 | 1 | 212 | 152 | 8 | 11 | 0 | 41 |
| NC_000003.10 | Chr3 | 47 | 41 | 4 | 0 | 0 | 2 | 135 | 97 | 22 | 0 | 0 | 16 |
| NC_000004.10 | Chr4 | 55 | 44 | 6 | 2 | 0 | 3 | 365 | 277 | 30 | 15 | 3 | 40 |
| NC_000005.8 | Chr5 | 60 | 52 | 4 | 2 | 0 | 2 | 275 | 200 | 5 | 42 | 0 | 28 |
| NC_000006.10 | Chr6 | 51 | 35 | 3 | 1 | 0 | 12 | 299 | 192 | 25 | 1 | 0 | 81 |
| NC_000007.12 | Chr7 | 63 | 42 | 11 | 3 | 0 | 7 | 410 | 265 | 86 | 17 | 1 | 41 |
| NC_000008.9 | Chr8 | 38 | 19 | 12 | 3 | 0 | 4 | 241 | 109 | 76 | 20 | 0 | 36 |
| NC_000009.10 | Chr9 | 35 | 25 | 2 | 3 | 4 | 1 | 152 | 113 | 12 | 14 | 12 | 1 |
| NC_000010.9 | Chr10 | 34 | 26 | 0 | 4 | 4 | 0 | 187 | 85 | 6 | 51 | 45 | 0 |
| NC_000011.8 | Chr11 | 43 | 35 | 2 | 1 | 0 | 5 | 200 | 182 | 3 | 1 | 0 | 14 |
| NC_000012.10 | Chr12 | 40 | 35 | 0 | 1 | 0 | 4 | 117 | 86 | 0 | 1 | 0 | 30 |
| NC_000013.9 | Chr13 | 13 | 12 | 1 | 0 | 0 | 0 | 50 | 49 | 1 | 0 | 0 | 0 |
| NC_000014.7 | Chr14 | 14 | 12 | 1 | 1 | 0 | 0 | 102 | 68 | 10 | 24 | 0 | 0 |
| NC_000015.8 | Chr15 | 37 | 26 | 0 | 9 | 0 | 2 | 297 | 192 | 4 | 85 | 2 | 14 |
| NC_000016.8 | Chr16 | 35 | 26 | 1 | 4 | 0 | 4 | 402 | 272 | 27 | 58 | 0 | 45 |
| NC_000017.9 | Chr17 | 31 | 14 | 7 | 3 | 0 | 7 | 247 | 86 | 53 | 29 | 1 | 78 |
| NC_000018.8 | Chr18 | 14 | 12 | 2 | 0 | 0 | 0 | 28 | 25 | 3 | 0 | 0 | 0 |
| NC_000019.8 | Chr19 | 24 | 17 | 3 | 2 | 0 | 2 | 186 | 121 | 40 | 21 | 0 | 4 |
| NC_000020.9 | Chr20 | 16 | 9 | 3 | 1 | 0 | 3 | 62 | 46 | 7 | 1 | 0 | 8 |
| NC_000021.7 | Chr21 | 9 | 6 | 2 | 0 | 0 | 1 | 38 | 24 | 2 | 0 | 0 | 12 |
| NC_000022.9 | Chr22 | 17 | 9 | 6 | 1 | 0 | 1 | 92 | 39 | 39 | 13 | 0 | 1 |
Samplesets
Number of Samplesets: 2
- Sampleset ID:
- 1
- Name:
- Chimp
- Size:
- 30
- Organisms:
- Pan troglodytes
- Sampleset Phenotype(s):
- None reported
| Sample ID | Cell Type | Subject ID | Sex | Subject Phenotype |
|---|---|---|---|---|
| Pt96 | Whole blood | Pt96 | Male | Not reported |
| Pt243 | Whole blood | Pt243 | Female | Not reported |
| S003622 | B-lymphocyte | Pt296 | Female | Not reported |
| S003610 | B-lymphocyte | Pt299 | Male | Not reported |
| Pt249 | Whole blood | Pt249 | Female | Not reported |
| Pt30 | Whole blood | Pt30 | Male | Not reported |
| Pt97 | Whole blood | Pt97 | Male | Not reported |
| Pt306 | Whole blood | Pt306 | Female | Not reported |
| Pt91 | Whole blood | Pt91 | Male | Not reported |
| Pt125 | Whole blood | Pt125 | Male | Not reported |
| Pt120 | Whole blood | Pt120 | Male | Not reported |
| Pt89 | Whole blood | Pt89 | Male | Not reported |
| PR001178 | B-lymphocyte | Pt422 | Male | Not reported |
| Pt257 | Whole blood | Pt257 | Female | Not reported |
| Pt231 | Whole blood | Pt231 | Female | Not reported |
| Pt93 | Whole blood | Pt93 | Male | Not reported |
| Pt19 | Whole blood | Pt19 | Male | Not reported |
| Pt116 | Whole blood | Pt116 | Male | Not reported |
| Pt90 | Whole blood | Pt90 | Male | Not reported |
| Pt205 | Whole blood | Pt205 | Female | Not reported |
| Pt124 | Whole blood | Pt124 | Male | Not reported |
| Pt33 | Whole blood | Pt33 | Male | Not reported |
| Pt256 | Whole blood | Pt256 | Female | Not reported |
| Pt238 | Whole blood | Pt238 | Female | Not reported |
| Pt245 | Whole blood | Pt245 | Female | Not reported |
| Pt126 | Whole blood | Pt126 | Male | Not reported |
| Pt226 | Whole blood | Pt226 | Female | Not reported |
| Pt251 | Whole blood | Pt251 | Female | Not reported |
| S003612 | B-lymphocyte | Pt421 | Female | Not reported |
| Pt98 | Whole blood | Pt98 | Male | Not reported |
- Sampleset ID:
- 2
- Name:
- Human
- Size:
- 30
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- None reported
| Sample ID | Cell Type | Subject ID | Sex | Ethnicity | Subject Phenotype |
|---|---|---|---|---|---|
| NA19225 | B-Lymphocyte | NA19225 | Female | YORUBA | Not reported |
| HGDP00984 | HGDP00984 | Male | Mbuti Pygmies | Not reported | |
| NA19108 | B-Lymphocyte | NA19108 | Female | YORUBA | Not reported |
| HGDP01089 | HGDP01089 | Male | Biaka Pygmies | Not reported | |
| HGDP00450 | HGDP00450 | Male | Mbuti Pygmies | Not reported | |
| HGDP00463 | HGDP00463 | Male | Mbuti Pygmies | Not reported | |
| NA19257 | B-Lymphocyte | NA19257 | Female | YORUBA | Not reported |
| NA19096 | B-Lymphocyte | NA19096 | Male | YORUBA | Not reported |
| NA18498 | B-Lymphocyte | NA18498 | Male | YORUBA | Not reported |
| HGDP00473 | HGDP00473 | Male | Biaka Pygmies | Not reported | |
| HGDP00460 | HGDP00460 | Male | Biaka Pygmies | Not reported | |
| HGDP00449 | HGDP00449 | Male | Mbuti Pygmies | Not reported | |
| HGDP01093 | HGDP01093 | Male | Biaka Pygmies | Not reported | |
| HGDP00472 | HGDP00472 | Male | Biaka Pygmies | Not reported | |
| NA19147 | B-Lymphocyte | NA19147 | Female | YORUBA | Not reported |
| HGDP00478 | HGDP00478 | Male | Mbuti Pygmies | Not reported | |
| HGDP01087 | HGDP01087 | Male | Biaka Pygmies | Not reported | |
| HGDP00467 | HGDP00467 | Male | Mbuti Pygmies | Not reported | |
| NA19189 | B-Lymphocyte | NA19189 | Male | YORUBA | Not reported |
| HGDP00462 | HGDP00462 | Male | Mbuti Pygmies | Not reported | |
| HGDP01094 | HGDP01094 | Male | Biaka Pygmies | Not reported | |
| HGDP01088 | HGDP01088 | Male | Biaka Pygmies | Not reported | |
| HGDP00474 | HGDP00474 | Male | Mbuti Pygmies | Not reported | |
| NA19113 | B-Lymphocyte | NA19113 | Male | YORUBA | Not reported |
| HGDP00986 | HGDP00986 | Male | Biaka Pygmies | Not reported | |
| NA19181 | B-Lymphocyte | NA19181 | Male | YORUBA | Not reported |
| HGDP00471 | HGDP00471 | Female | Mbuti Pygmies | Not reported | |
| NA18916 | B-Lymphocyte | NA18916 | Female | YORUBA | Not reported |
| HGDP01086 | HGDP01086 | Male | Biaka Pygmies | Not reported | |
| HGDP00476 | HGDP00476 | Female | Mbuti Pygmies | Not reported |
Experimental Details
| Experiment ID | Type | Method | Analysis | Platforms | Data | Number of Variant Calls |
|---|---|---|---|---|---|---|
| 1 | Discovery | BAC aCGH | Probe signal intensity | Sanger H. sapiens Whole Genome Tile Path 28.7k v3 | AE | 2,087 |
| 2 | Discovery | BAC aCGH | Probe signal intensity | Sanger H. sapiens Whole Genome Tile Path 28.7k v3 | AE | 2,414 |
| 3 | Validation | PCR | Manual observation | 27 | ||
| 4 | Validation | FISH | Manual observation | 82 |
Validations
| Experiment ID | Method | Analysis | Number of Variant Calls Validated |
|---|---|---|---|
| 3 | PCR | Manual observation | 27 |
| 4 | FISH | Manual observation | 82 |