nstd77 - Polley et al 2016 - dbVar Study

nstd77 (Polley et al. 2016)

Organism:: Human
Study Type:: Case-Control
Submitter:: Ed Hollox
Description:: DMBT1 has a complex copy number variable structure, with two, independent, rapidly mutating copy number variable regions, called CNV1 and CNV2. Because the copy number variable regions are predicted to affect the number of bacteria-binding domains, different alleles may alter host-microbe interactions in the gut. Our aim was to investigate the role of this complex variation in susceptibility to Crohn's disease. We analysed the association of both copy number variable regions with presence of Crohn's disease, and its severity, on three case-control cohorts. We also reanalysed array comparative genomic hybridisation data (aCGH) from a large case-control cohort study for both copy number variable regions. We found no association with a linear increase in copy number, nor when the CNV1 is regarded as presence or absence of a deletion allele. See Variant Summary counts for nstd77 in dbVar Variant Summary.
Publication(s):: Polley et al. 2016

Links

Source: NCBI

Detailed Information: Download 2 Variant Regions, Download 10684 Variant Calls, Download Both, FTP

Variant Summary
Samplesets
Experimental Details
Validations

Variant Summary

Assembly used for analysis:
Remapped: GRCh38.p12 (hg38)
Submitted: GRCh37 (hg19)

Variant Summary for:

Sequence ID	Chr	Number of Variant Regions	Number of Variant Calls	Placement type	Link to graphical display
NC_000010.11	Chr10	2	10,684	Remapped	NC_000010.11

Sequence ID	Chr	Number of Variant Regions	Number of Variant Calls	Placement type	Link to graphical display
NC_000010.10	Chr10	2	10,684	Submitted	NC_000010.10

Remapping summary:

			Variant Region remap status						Variant Call remap status
Sequence ID	Chr	Variant Regions on source	Perfect	Good	Pass	Fail	Mult	Variant Calls on source	Perfect	Good	Pass	Fail	Mult
NC_000010.10	Chr10	2	2	0	0	0	0	10,684	10,684	0	0	0	0

Samplesets

Number of Samplesets: 9

Sampleset ID:: 1
Name:: Crohn's - English
Sampleset Type:: Case
Description:: English Crohn's disease samples from WTCCC study
Size:: 1,021
Organisms:: Homo sapiens
Sampleset Phenotype(s):: Crohn's disease

Samples for sampleset 1 (displaying 100 of the 1021 samples)
Sample ID	Subject ID	Sex	Ethnicity	Subject Age	Subject Phenotype
GKT0073	GKT0073	Male	Caucasian	46 years	Crohn's disease
GKT0157	GKT0157	Female	Caucasian	41 years	Crohn's disease
GKT0132	GKT0132	Female	Caucasian	56 years	Crohn's disease
GKT0154	GKT0154	Female	Caucasian	76 years	Crohn's disease
GKT0134	GKT0134	Male	Caucasian	58 years	Crohn's disease
GKT0273	GKT0273	Male	Caucasian	82 years	Crohn's disease
GKT0121	GKT0121	Male	Caucasian	69 years	Crohn's disease
GKT0351	GKT0351	Male	Asian-Chinese/Caribbean	57 years	Crohn's disease
GKT0173	GKT0173	Female	Caucasian	51 years	Crohn's disease
GKT0160	GKT0160	Female	Caucasian	87 years	Crohn's disease
GKT0113	GKT0113	Female	Caucasian	51 years	Crohn's disease
GKT0335	GKT0335	Female	Caucasian	72 years	Crohn's disease
GKT0280	GKT0280	Female	Caucasian	64 years	Crohn's disease
GKT0220	GKT0220	Male	African Carribean	57 years	Crohn's disease
GKT0140	GKT0140	Male	Caucasian	63 years	Crohn's disease
GKT0125	GKT0125	Male	Caucasian	45 years	Crohn's disease
GKT0366	GKT0366	Male	Caucasian-England	71 years	Crohn's disease
GKT0150	GKT0150	Female	Caucasian	69 years	Crohn's disease
GKT0112	GKT0112	Female	Caucasian	42 years	Crohn's disease
GKT0231	GKT0231	Female	Caucasian	38 years	Crohn's disease
GKT0228	GKT0228	Male	Caucasian	37 years	Crohn's disease
GKT0364	GKT0364	Female	Caucasian-England	71 years	Crohn's disease
GKT0275	GKT0275	Female	Caucasian	43 years	Crohn's disease
GKT0318	GKT0318	Male	Caucasian	49 years	Crohn's disease
GKT0262	GKT0262	Male	Caucasian	56 years	Crohn's disease
GKT0350	GKT0350	Male	Asian-Chinese/Caribbean	42 years	Crohn's disease
GKT0313	GKT0313	Female	Asian	45 years	Crohn's disease
GKT0243	GKT0243	Male	Caucasian	48 years	Crohn's disease
GKT0131	GKT0131	Male	Caucasian	68 years	Crohn's disease
GKT0164	GKT0164	Female	Caucasian	51 years	Crohn's disease
GKT0312	GKT0312	Female	W-CAUCASIAN	50 years	Crohn's disease
GKT0330	GKT0330	Female	Caucasian	39 years	Crohn's disease
GKT0195	GKT0195	Male	Caucasian	40 years	Crohn's disease
GKT0342	GKT0342	Female	Caucasian	67 years	Crohn's disease
GKT0155	GKT0155	Female	Caucasian	78 years	Crohn's disease
GKT0278	GKT0278	Male	Caucasian	57 years	Crohn's disease
GKT0257	GKT0257	Male	Caucasian	40 years	Crohn's disease
GKT0194	GKT0194	Male	African Carribean	43 years	Crohn's disease
GKT0217	GKT0217	Female	African Carribean	52 years	Crohn's disease
GKT0193	GKT0193	Male	African Carribean	66 years	Crohn's disease
GKT0289	GKT0289	Female	Caucasian	78 years	Crohn's disease
GKT0306	GKT0306	Female	Caucasian	57 years	Crohn's disease
GKT0311	GKT0311	Female	Caucasian	35 years	Crohn's disease
GKT0288	GKT0288	Female	Caucasian	40 years	Crohn's disease
GKT0124	GKT0124	Male	Caucasian	61 years	Crohn's disease
GKT0316	GKT0316	Male	Caucasian	50 years	Crohn's disease
GKT0333	GKT0333	Male	Caucasian	49 years	Crohn's disease
GKT0297	GKT0297	Male	Caucasian	35 years	Crohn's disease
GKT0148	GKT0148	Female	Caucasian	68 years	Crohn's disease
GKT0365	GKT0365	Male	Caucasian-England	64 years	Crohn's disease
GKT0334	GKT0334	Male	Caucasian	49 years	Crohn's disease
GKT0144	GKT0144	Male	Caucasian	44 years	Crohn's disease
GKT0349	GKT0349	Male	Asian-Chinese/Caribbean	65 years	Crohn's disease
GKT0145	GKT0145	Female	Caucasian	46 years	Crohn's disease
GKT0149	GKT0149	Female	Caucasian	80 years	Crohn's disease
GKT0281	GKT0281	Female	Caucasian	51 years	Crohn's disease
GKT0146	GKT0146	Male	Caucasian	41 years	Crohn's disease
GKT0285	GKT0285	Male	Caucasian	65 years	Crohn's disease
GKT0338	GKT0338	Male	Caucasian	40 years	Crohn's disease
GKT0111	GKT0111	Female	Caucasian	88 years	Crohn's disease
GKT0341	GKT0341	Female	Caucasian	40 years	Crohn's disease
GKT0354	GKT0354	Female	Asian-Chinese/Caribbean	40 years	Crohn's disease
GKT0317	GKT0317	Male	Caucasian	72 years	Crohn's disease
GKT0222	GKT0222	Female	African Carribean	64 years	Crohn's disease
GKT0260	GKT0260	Female	Caucasian	70 years	Crohn's disease
GKT0339	GKT0339	Female	Caucasian	44 years	Crohn's disease
GKT0343	GKT0343	Male	Caucasian	42 years	Crohn's disease
GKT0209	GKT0209	Male	African Carribean	76 years	Crohn's disease
GKT0315	GKT0315	Female	Asian	52 years	Crohn's disease
GKT0251	GKT0251	Female	Caucasian	58 years	Crohn's disease
GKT0250	GKT0250	Female	Caucasian	40 years	Crohn's disease
GKT0129	GKT0129	Female	Caucasian	65 years	Crohn's disease
GKT0159	GKT0159	Female	Caucasian	78 years	Crohn's disease
GKT0128	GKT0128	Female	Caucasian	45 years	Crohn's disease
GKT0355	GKT0355	Female	Asian-Chinese/Caribbean	54 years	Crohn's disease
GKT0201	GKT0201	Female	African Carribean	36 years	Crohn's disease
GKT0344	GKT0344	Female	Caucasian	36 years	Crohn's disease
GKT0277	GKT0277	Female	Caucasian	55 years	Crohn's disease
GKT0219	GKT0219	Female	African Carribean	44 years	Crohn's disease
GKT0116	GKT0116	Female	Caucasian	50 years	Crohn's disease
GKT0156	GKT0156	Female	Caucasian	46 years	Crohn's disease
GKT0184	GKT0184	Male	Caucasian	73 years	Crohn's disease
GKT0268	GKT0268	Female	Caucasian	71 years	Crohn's disease
GKT0271	GKT0271	Female	Caucasian	39 years	Crohn's disease
GKT0272	GKT0272	Female	Caucasian	42 years	Crohn's disease
GKT0274	GKT0274	Female	Caucasian	62 years	Crohn's disease
GKT0340	GKT0340	Female	Caucasian	41 years	Crohn's disease
GKT0190	GKT0190	Male	African Carribean	41 years	Crohn's disease
GKT0363	GKT0363	Female	Caucasian-England	43 years	Crohn's disease
GKT0114	GKT0114	Female	Caucasian	38 years	Crohn's disease
GKT0332	GKT0332	Female	Caucasian	44 years	Crohn's disease
GKT0240	GKT0240	Male	Caucasian	67 years	Crohn's disease
GKT0319	GKT0319	Male	Caucasian	47 years	Crohn's disease
GKT0126	GKT0126	Male	Caucasian	74 years	Crohn's disease
GKT0158	GKT0158	Female	Caucasian	87 years	Crohn's disease
GKT0137	GKT0137	Male	Caucasian	49 years	Crohn's disease
GKT0123	GKT0123	Male	Caucasian	66 years	Crohn's disease
GKT0237	GKT0237	Male	Caucasian	55 years	Crohn's disease
GKT0172	GKT0172	Male	Caucasian	86 years	Crohn's disease
GKT0187	GKT0187	Female	African Carribean	44 years	Crohn's disease

Sampleset ID:: 2
Name:: Crohn's - Scottish
Sampleset Type:: Case
Description:: Crohn's disease
Size:: 350
Organisms:: Homo sapiens
Sampleset Phenotype(s):: Crohn's disease

Samples for sampleset 2 (displaying 100 of the 350 samples)
Sample ID	Cell Type	Subject ID	Sex	Ethnicity	Subject Phenotype
0016CD	BLOOD	0016CD	Female	Caucasian	Crohn's disease
0202CD	BLOOD	0202CD	Female	Caucasian	Crohn's disease
0168CD	BLOOD	0168CD	Female	Caucasian	Crohn's disease
0043CD	BLOOD	0043CD	Female	Caucasian	Crohn's disease
0172CD	BLOOD	0172CD	Female	Caucasian	Crohn's disease
0135CD	BLOOD	0135CD	Female	Caucasian	Crohn's disease
0048CD	BLOOD	0048CD	Male	Caucasian	Crohn's disease
0078CD	BLOOD	0078CD	Male	Caucasian	Crohn's disease
0144CD	BLOOD	0144CD	Male	Caucasian	Crohn's disease
0119CD	BLOOD	0119CD	Male	Caucasian	Crohn's disease
0187CD	BLOOD	0187CD	Female	Caucasian	Crohn's disease
0009CD	BLOOD	0009CD	Male	Caucasian	Crohn's disease
0207CD	BLOOD	0207CD	Female	Caucasian	Crohn's disease
0186CD	BLOOD	0186CD	Male	Caucasian	Crohn's disease
0046CD	BLOOD	0046CD	Female	Caucasian	Crohn's disease
0036CD	BLOOD	0036CD	Female	Caucasian	Crohn's disease
0038CD	BLOOD	0038CD	Female	Caucasian	Crohn's disease
0007CD	BLOOD	0007CD	Male	Caucasian	Crohn's disease
0004CD	BLOOD	0004CD	Male	Caucasian	Crohn's disease
0177CD	BLOOD	0177CD	Male	Caucasian	Crohn's disease
0021CD	BLOOD	0021CD	Male	Caucasian	Crohn's disease
0192CD	BLOOD	0192CD	Female	Caucasian	Crohn's disease
0091CD	BLOOD	0091CD	Female	Caucasian	Crohn's disease
0156CD	BLOOD	0156CD	Female	Caucasian	Crohn's disease
0053CD	BLOOD	0053CD	Female	Caucasian	Crohn's disease
0080CD	BLOOD	0080CD	Male	Caucasian	Crohn's disease
0023CD	BLOOD	0023CD	Female	Caucasian	Crohn's disease
0018CD	BLOOD	0018CD	Female	Caucasian	Crohn's disease
0015CD	BLOOD	0015CD	Male	Caucasian	Crohn's disease
0002CD	BLOOD	0002CD	Female	Caucasian	Crohn's disease
0003CD	BLOOD	0003CD	Female	Caucasian	Crohn's disease
0140CD	BLOOD	0140CD	Female	Caucasian	Crohn's disease
0084CD	BLOOD	0084CD	Male	Caucasian	Crohn's disease
0193CD	BLOOD	0193CD	Female	Caucasian	Crohn's disease
0211CD	BLOOD	0211CD	Female	Caucasian	Crohn's disease
0061CD	BLOOD	0061CD	Male	Caucasian	Crohn's disease
0040CD	BLOOD	0040CD	Male	Caucasian	Crohn's disease
0204CD	BLOOD	0204CD	Female	Caucasian	Crohn's disease
0194CD	BLOOD	0194CD	Female	Caucasian	Crohn's disease
0049CD	BLOOD	0049CD	Female	Caucasian	Crohn's disease
0118CD	BLOOD	0118CD	Male	Caucasian	Crohn's disease
0114CD	BLOOD	0114CD	Male	Caucasian	Crohn's disease
0074CD	BLOOD	0074CD	Female	Caucasian	Crohn's disease
0010CD	BLOOD	0010CD	Female	Caucasian	Crohn's disease
0005CD	BLOOD	0005CD	Male	Caucasian	Crohn's disease
0055CD	BLOOD	0055CD	Male	Caucasian	Crohn's disease
0028CD	BLOOD	0028CD	Female	Caucasian	Crohn's disease
0180CD	BLOOD	0180CD	Female	Caucasian	Crohn's disease
0033CD	BLOOD	0033CD	Female	Caucasian	Crohn's disease
0110CD	BLOOD	0110CD	Female	Caucasian	Crohn's disease
0070CD	BLOOD	0070CD	Female	Caucasian	Crohn's disease
0052CD	BLOOD	0052CD	Male	Caucasian	Crohn's disease
0056CD	BLOOD	0056CD	Female	Caucasian	Crohn's disease
0031CD	BLOOD	0031CD	Female	Caucasian	Crohn's disease
0025CD	BLOOD	0025CD	Female	Caucasian	Crohn's disease
0037CD	BLOOD	0037CD	Female	Caucasian	Crohn's disease
0042CD	BLOOD	0042CD	Male	Caucasian	Crohn's disease
0034CD	BLOOD	0034CD	Male	Caucasian	Crohn's disease
0201CD	BLOOD	0201CD	Female	Caucasian	Crohn's disease
0208CD	BLOOD	0208CD	Male	Caucasian	Crohn's disease
0203CD	BLOOD	0203CD	Female	Caucasian	Crohn's disease
0050CD	BLOOD	0050CD	Female	Caucasian	Crohn's disease
0022CD	BLOOD	0022CD	Female	Caucasian	Crohn's disease
0014CD	BLOOD	0014CD	Male	Caucasian	Crohn's disease
0103CD	BLOOD	0103CD	Female	Caucasian	Crohn's disease
0032CD	BLOOD	0032CD	Female	Caucasian	Crohn's disease
0012CD	BLOOD	0012CD	Female	Caucasian	Crohn's disease
0163CD	BLOOD	0163CD	Male	Caucasian	Crohn's disease
0027CD	BLOOD	0027CD	Male	Caucasian	Crohn's disease
0085CD	BLOOD	0085CD	Male	Caucasian	Crohn's disease
0154CD	BLOOD	0154CD	Female	Caucasian	Crohn's disease
0019CD	BLOOD	0019CD	Female	Caucasian	Crohn's disease
0200CD	BLOOD	0200CD	Male	Caucasian	Crohn's disease
0035CD	BLOOD	0035CD	Female	Caucasian	Crohn's disease
0039CD	BLOOD	0039CD	Female	Caucasian	Crohn's disease
0020CD	BLOOD	0020CD	Female	Caucasian	Crohn's disease
0058CD	BLOOD	0058CD	Male	Caucasian	Crohn's disease
0075CD	BLOOD	0075CD	Male	Caucasian	Crohn's disease
0147CD	BLOOD	0147CD	Female	Caucasian	Crohn's disease
0099CD	BLOOD	0099CD	Male	Caucasian	Crohn's disease
0026CD	BLOOD	0026CD	Female	Caucasian	Crohn's disease
0112CD	BLOOD	0112CD	Female	Caucasian	Crohn's disease
0210CD	BLOOD	0210CD	Male	Caucasian	Crohn's disease
0176CD	BLOOD	0176CD	Male	Caucasian	Crohn's disease
0184CD	BLOOD	0184CD	Male	Caucasian	Crohn's disease
0197CD	BLOOD	0197CD	Male	Caucasian	Crohn's disease
0054CD	BLOOD	0054CD	Male	Caucasian	Crohn's disease
0057CD	BLOOD	0057CD	Female	Caucasian	Crohn's disease
0073CD	BLOOD	0073CD	Female	Caucasian	Crohn's disease
0179CD	BLOOD	0179CD	Female	Caucasian	Crohn's disease
0008CD	BLOOD	0008CD	Female	Caucasian	Crohn's disease
0045CD	BLOOD	0045CD	Female	Caucasian	Crohn's disease
0017CD	BLOOD	0017CD	Female	Caucasian	Crohn's disease
0136CD	BLOOD	0136CD	Female	Caucasian	Crohn's disease
0191CD	BLOOD	0191CD	Female	Caucasian	Crohn's disease
0122CD	BLOOD	0122CD	Female	Caucasian	Crohn's disease
0209CD	BLOOD	0209CD	Male	Caucasian	Crohn's disease
0094CD	BLOOD	0094CD	Female	Caucasian	Crohn's disease
0013CD	BLOOD	0013CD	Male	Caucasian	Crohn's disease
0006CD	BLOOD	0006CD	Male	Caucasian	Crohn's disease

Sampleset ID:: 3
Name:: Control - Scottish
Sampleset Type:: Control
Description:: crohn's disease free control
Size:: 339
Organisms:: Homo sapiens
Sampleset Phenotype(s):: Control

Samples for sampleset 3 (displaying 100 of the 339 samples)
Sample ID	Cell Type	Subject ID	Sex	Ethnicity	Subject Phenotype
0061BT	BLOOD	0061BT	Female	Caucasian	Control
0053HC	BLOOD	0053HC	Male	Caucasian	Control
0038HC	BLOOD	0038HC	Female	Caucasian	Control
0042BT	BLOOD	0042BT	Female	Caucasian	Control
0011BT	BLOOD	0011BT	Male	Caucasian	Control
0045HC	BLOOD	0045HC	Female	Caucasian	Control
0023BT	BLOOD	0023BT	Male	Caucasian	Control
0008HC	BLOOD	0008HC	Male	Caucasian	Control
0032HC	BLOOD	0032HC	Female	Caucasian	Control
0015BT	BLOOD	0015BT	Female	Caucasian	Control
0040HC	BLOOD	0040HC	Female	Caucasian	Control
0039HC	BLOOD	0039HC	Female	Caucasian	Control
0054HC	BLOOD	0054HC	Male	Caucasian	Control
0020HC	BLOOD	0020HC	Female	Caucasian	Control
0002HC	BLOOD	0002HC	Female	Caucasian	Control
0006BT	BLOOD	0006BT	Female	Caucasian	Control
0009HC	BLOOD	0009HC	Male	Caucasian	Control
0058HC	BLOOD	0058HC	Female	Caucasian	Control
0003BT	BLOOD	0003BT	Male	Caucasian	Control
0063BT	BLOOD	0063BT	Female	Caucasian	Control
0047HC	BLOOD	0047HC	Female	Caucasian	Control
0037HC	BLOOD	0037HC	Male	Caucasian	Control
0013HC	BLOOD	0013HC	Male	Caucasian	Control
0017HC	BLOOD	0017HC	Male	Caucasian	Control
0060BT	BLOOD	0060BT	Male	Caucasian	Control
0048BT	BLOOD	0048BT	Female	Caucasian	Control
0019BT	BLOOD	0019BT	Male	Caucasian	Control
0030HC	BLOOD	0030HC	Female	Caucasian	Control
0040BT	BLOOD	0040BT	Female	Caucasian	Control
0033HC	SALIVA	0033HC	Female	Caucasian	Control
0049HC	BLOOD	0049HC	Female	Caucasian	Control
0045BT	BLOOD	0045BT	Male	Caucasian	Control
0022HC	BLOOD	0022HC	Male	Caucasian	Control
0028HC	BLOOD	0028HC	Male	Caucasian	Control
0055BT	BLOOD	0055BT	Female	Caucasian	Control
0039BT	BLOOD	0039BT	Female	Caucasian	Control
0007BT	BLOOD	0007BT	Male	Caucasian	Control
0004HC	BLOOD	0004HC	Male	Caucasian	Control
0061HC	BLOOD	0061HC	Female	Caucasian	Control
0046HC	BLOOD	0046HC	Male	Caucasian	Control
0008BT	BLOOD	0008BT	Male	Caucasian	Control
0052HC	BLOOD	0052HC	Male	Caucasian	Control
0035BT	BLOOD	0035BT	Female	Caucasian	Control
0001BT	BLOOD	0001BT	Male	Caucasian	Control
0038BT	BLOOD	0038BT	Female	Caucasian	Control
0034BT	BLOOD	0034BT	Male	Caucasian	Control
0030BT	BLOOD	0030BT	Male	Caucasian	Control
0051HC	BLOOD	0051HC	Female	Caucasian	Control
0005BT	BLOOD	0005BT	Female	Caucasian	Control
0067BT	BLOOD	0067BT	Female	Caucasian	Control
0063HC	BLOOD	0063HC	Female	Caucasian	Control
0062HC	BLOOD	0062HC	Male	Caucasian	Control
0051BT	BLOOD	0051BT	Male	Caucasian	Control
0059BT	BLOOD	0059BT	Female	Caucasian	Control
0031HC	BLOOD	0031HC	Male	Caucasian	Control
0009BT	BLOOD	0009BT	Male	Caucasian	Control
0027HC	BLOOD	0027HC	Female	Caucasian	Control
0058BT	BLOOD	0058BT	Male	Caucasian	Control
0015HC	BLOOD	0015HC	Male	Caucasian	Control
0057HC	BLOOD	0057HC	Male	Caucasian	Control
0001HC	BLOOD	0001HC	Male	Caucasian	Control
0050BT	BLOOD	0050BT	Female	Caucasian	Control
0005HC	BLOOD	0005HC	Female	Caucasian	Control
0017BT	BLOOD	0017BT	Male	Caucasian	Control
0012BT	BLOOD	0012BT	Female	Caucasian	Control
0034HC	BLOOD	0034HC	Male	Caucasian	Control
0029BT	BLOOD	0029BT	Male	Caucasian	Control
0006HC	BLOOD	0006HC	Male	Caucasian	Control
0041BT	BLOOD	0041BT	Female	Caucasian	Control
0065BT	BLOOD	0065BT	Male	Caucasian	Control
0007HC	BLOOD	0007HC	Male	Caucasian	Control
0060HC	BLOOD	0060HC	Male	Caucasian	Control
0021BT	BLOOD	0021BT	Male	Caucasian	Control
0049BT	BLOOD	0049BT	Male	Caucasian	Control
0036HC	BLOOD	0036HC	Male	Caucasian	Control
0027BT	BLOOD	0027BT	Male	Caucasian	Control
0026BT	BLOOD	0026BT	Female	Caucasian	Control
0044HC	BLOOD	0044HC	Male	Caucasian	Control
0018HC	BLOOD	0018HC	Female	Caucasian	Control
0014HC	BLOOD	0014HC	Female	Caucasian	Control
0025BT	BLOOD	0025BT	Female	Caucasian	Control
0021HC	BLOOD	0021HC	Male	Caucasian	Control
0043HC	BLOOD	0043HC	Male	Caucasian	Control
0012HC	BLOOD	0012HC	Male	Caucasian	Control
0046BT	BLOOD	0046BT	Male	Caucasian	Control
0047BT	BLOOD	0047BT	Male	Caucasian	Control
0041HC	BLOOD	0041HC	Female	Caucasian	Control
0016BT	BLOOD	0016BT	Female	Caucasian	Control
0010BT	BLOOD	0010BT	Female	Caucasian	Control
0029HC	BLOOD	0029HC	Female	Caucasian	Control
0003HC	BLOOD	0003HC	Male	Caucasian	Control
0010HC	BLOOD	0010HC	Male	Caucasian	Control
0016HC	BLOOD	0016HC	Male	Caucasian	Control
0042HC	BLOOD	0042HC	Female	Caucasian	Control
0033BT	BLOOD	0033BT	Male	Caucasian	Control
0044BT	BLOOD	0044BT	Male	Caucasian	Control
0002BT	BLOOD	0002BT	Male	Caucasian	Control
0011HC	BLOOD	0011HC	Female	Caucasian	Control
0054BT	BLOOD	0054BT	Male	Caucasian	Control
0019HC	BLOOD	0019HC	Male	Caucasian	Control

Sampleset ID:: 4
Name:: Crohn's - Danish
Sampleset Type:: Case
Description:: Crohn's disease
Size:: 419
Organisms:: Homo sapiens
Sampleset Phenotype(s):: Crohn's disease

Samples for sampleset 4 (displaying 100 of the 419 samples)
Sample ID	Cell Type	Subject ID	Sex	Ethnicity	Subject Age	Subject Phenotype
GE455	BLOOD	GE455	Male	Caucasian (Danish)	63 years	Crohn's disease
GE445	BLOOD	GE445	Male	Caucasian (Danish)	45 years	Crohn's disease
BBH508	BLOOD	BBH508	Female	Caucasian (Danish)	34 years	Crohn's disease
FRE362	BLOOD	FRE362	Female	Caucasian (Danish)	38 years	Crohn's disease
BBH511	BLOOD	BBH511	Female	Caucasian (Danish)	38 years	Crohn's disease
GE461	BLOOD	GE461	Female	Caucasian (Danish)	64 years	Crohn's disease
FRE224	BLOOD	FRE224	Female	Caucasian (Danish)	84 years	Crohn's disease
AH397	BLOOD	AH397	Female	Caucasian (Danish)	84 years	Crohn's disease
GE448	BLOOD	GE448	Male	Caucasian (Danish)	44 years	Crohn's disease
GE360	BLOOD	GE360	Male	Caucasian (Danish)	34 years	Crohn's disease
GE474	BLOOD	GE474	Female	Caucasian (Danish)	43 years	Crohn's disease
GE368	BLOOD	GE368	Male	Caucasian (Danish)	60 years	Crohn's disease
FRE374	BLOOD	FRE374	Female	Caucasian (Danish)	94 years	Crohn's disease
AH173	BLOOD	AH173	Male	Caucasian (Danish)	72 years	Crohn's disease
GE377	BLOOD	GE377	Female	Caucasian (Danish)	85 years	Crohn's disease
GE359	BLOOD	GE359	Female	Caucasian (Danish)	88 years	Crohn's disease
FRE250	BLOOD	FRE250	Female	Caucasian (Danish)	74 years	Crohn's disease
AH409	BLOOD	AH409	Male	Caucasian (Danish)	44 years	Crohn's disease
GE151	BLOOD	GE151	Female	Caucasian (Danish)	68 years	Crohn's disease
GE118	BLOOD	GE118	Female	Caucasian (Danish)	93 years	Crohn's disease
BBH509	BLOOD	BBH509	Female	Caucasian (Danish)	79 years	Crohn's disease
GE465	BLOOD	GE465	Female	Caucasian (Danish)	102 years	Crohn's disease
GE336	BLOOD	GE336	Female	Caucasian (Danish)	40 years	Crohn's disease
BBH512	BLOOD	BBH512	Female	Caucasian (Danish)	43 years	Crohn's disease
FRE364	BLOOD	FRE364	Female	Caucasian (Danish)	37 years	Crohn's disease
GE444	BLOOD	GE444	Female	Caucasian (Danish)	72 years	Crohn's disease
GE437	BLOOD	GE437	Female	Caucasian (Danish)	54 years	Crohn's disease
GE450	BLOOD	GE450	Female	Caucasian (Danish)	92 years	Crohn's disease
GE438	BLOOD	GE438	Male	Caucasian (Danish)	74 years	Crohn's disease
GE358	BLOOD	GE358	Female	Caucasian (Danish)	71 years	Crohn's disease
GE452	BLOOD	GE452	Female	Caucasian (Danish)	84 years	Crohn's disease
GE447	BLOOD	GE447	Male	Caucasian (Danish)	74 years	Crohn's disease
BBH519	BLOOD	BBH519	Female	Caucasian (Danish)	53 years	Crohn's disease
GE462	BLOOD	GE462	Female	Caucasian (Danish)	39 years	Crohn's disease
GE464	BLOOD	GE464	Female	Caucasian (Danish)	40 years	Crohn's disease
GE440	BLOOD	GE440	Female	Caucasian (Danish)	49 years	Crohn's disease
GE356	BLOOD	GE356	Male	Caucasian (Danish)	44 years	Crohn's disease
AH325	BLOOD	AH325	Female	Caucasian (Danish)	59 years	Crohn's disease
GE229	BLOOD	GE229	Female	Caucasian (Danish)	89 years	Crohn's disease
BBH522	BLOOD	BBH522	Female	Caucasian (Danish)	42 years	Crohn's disease
GE451	BLOOD	GE451	Male	Caucasian (Danish)	38 years	Crohn's disease
GE436	BLOOD	GE436	Male	Caucasian (Danish)	54 years	Crohn's disease
GE331	BLOOD	GE331	Male	Caucasian (Danish)	84 years	Crohn's disease
GE387	BLOOD	GE387	Female	Caucasian (Danish)	54 years	Crohn's disease
GE475	BLOOD	GE475	Female	Caucasian (Danish)	43 years	Crohn's disease
GE439	BLOOD	GE439	Male	Caucasian (Danish)	27 years	Crohn's disease
GE22	BLOOD	GE22	Female	Caucasian (Danish)	92 years	Crohn's disease
BBH510	BLOOD	BBH510	Female	Caucasian (Danish)	88 years	Crohn's disease
GE466	BLOOD	GE466	Female	Caucasian (Danish)	94 years	Crohn's disease
GE198	BLOOD	GE198	Male	Caucasian (Danish)	87 years	Crohn's disease
GE341	BLOOD	GE341	Female	Caucasian (Danish)	32 years	Crohn's disease
GE470	BLOOD	GE470	Male	Caucasian (Danish)	57 years	Crohn's disease
GE449	BLOOD	GE449	Male	Caucasian (Danish)	67 years	Crohn's disease
GE156	BLOOD	GE156	Female	Caucasian (Danish)	27 years	Crohn's disease
FRE200	BLOOD	FRE200	Female	Caucasian (Danish)	45 years	Crohn's disease
FRE228	BLOOD	FRE228	Female	Caucasian (Danish)	41 years	Crohn's disease
GE459	BLOOD	GE459	Male	Caucasian (Danish)	80 years	Crohn's disease
GE160	BLOOD	GE160	Male	Danish	54 years	Crohn's disease
AH349	BLOOD	AH349	Female	Caucasian (Danish)	74 years	Crohn's disease
FRE274	BLOOD	FRE274	Male	Caucasian (Danish)	45 years	Crohn's disease
AH530	BLOOD	AH530	Female	Caucasian (Danish)	50 years	Crohn's disease
AH478	BLOOD	AH478	Male	Caucasian (Danish)	51 years	Crohn's disease
GE472	BLOOD	GE472	Female	Caucasian (Danish)	30 years	Crohn's disease
GE446	BLOOD	GE446	Female	Caucasian (Danish)	33 years	Crohn's disease
BBH514	BLOOD	BBH514	Male	Caucasian (Danish)	65 years	Crohn's disease
GE458	BLOOD	GE458	Female	Caucasian (Danish)	38 years	Crohn's disease
GE249	BLOOD	GE249	Female	Caucasian (Danish)	91 years	Crohn's disease
GE226	BLOOD	GE226	Female	Caucasian (Danish)	31 years	Crohn's disease
FRE422	BLOOD	FRE422	Female	Caucasian (Danish)	39 years	Crohn's disease
BBH513	BLOOD	BBH513	Male	Caucasian (Danish)	64 years	Crohn's disease
FRE272	BLOOD	FRE272	Female	Caucasian (Danish)	35 years	Crohn's disease
GE413	BLOOD	GE413	Female	Caucasian (Danish)	93 years	Crohn's disease
GE230	BLOOD	GE230	Male	Caucasian (Danish)	85 years	Crohn's disease
FRE271	BLOOD	FRE271	Female	Caucasian (Danish)	40 years	Crohn's disease
BBH527	BLOOD	BBH527	Female	Caucasian (Danish)	64 years	Crohn's disease
AH516	BLOOD	AH516	Male	Caucasian (Danish)	63 years	Crohn's disease
AH171	BLOOD	AH171	Male	Caucasian (Danish)	58 years	Crohn's disease
GE467	BLOOD	GE467	Male	Caucasian (Danish)	39 years	Crohn's disease
GE403	BLOOD	GE403	Male	Caucasian (Danish)	28 years	Crohn's disease
GE481	BLOOD	GE481	Male	Caucasian (Danish)	75 years	Crohn's disease
FRE326	BLOOD	FRE326	Female	Caucasian (Danish)	72 years	Crohn's disease
GE131	BLOOD	GE131	Female	Caucasian (Danish)	28 years	Crohn's disease
GE388	BLOOD	GE388	Female	Caucasian (Danish)	43 years	Crohn's disease
AH264	BLOOD	AH264	Female	Danish	44 years	Crohn's disease
GE119	BLOOD	GE119	Female	Caucasian (Danish)	54 years	Crohn's disease
AH175	BLOOD	AH175	Male	Danish	73 years	Crohn's disease
AH206	BLOOD	AH206	Female	Caucasian (Danish)	40 years	Crohn's disease
BBH523	BLOOD	BBH523	Female	Caucasian (Danish)	28 years	Crohn's disease
BBH525	BLOOD	BBH525	Male	Caucasian (Danish)	40 years	Crohn's disease
AH410	BLOOD	AH410	Female	Caucasian (Danish)	70 years	Crohn's disease
FRE245	BLOOD	FRE245	Female	Caucasian (Danish)	48 years	Crohn's disease
FRE186	BLOOD	FRE186	Female	Caucasian (Danish)	74 years	Crohn's disease
AH350	BLOOD	AH350	Male	Caucasian (Danish)	97 years	Crohn's disease
GE473	BLOOD	GE473	Female	Danish	27 years	Crohn's disease
BBH528	BLOOD	BBH528	Female	Caucasian (Danish)	74 years	Crohn's disease
FRE363	BLOOD	FRE363	Male	Caucasian (Danish)	39 years	Crohn's disease
GE460	BLOOD	GE460	Male	Caucasian (Danish)	60 years	Crohn's disease
AH421	BLOOD	AH421	Male	Caucasian (Danish)	63 years	Crohn's disease
GE476	BLOOD	GE476	Female	Caucasian (Danish)	68 years	Crohn's disease
GE463	BLOOD	GE463	Male	Danish	62 years	Crohn's disease

Sampleset ID:: 5
Name:: Control - Danish
Sampleset Type:: Control
Description:: crohn's disease free control
Size:: 179
Organisms:: Homo sapiens
Sampleset Phenotype(s):: Control

Samples for sampleset 5 (displaying 100 of the 179 samples)
Sample ID	Cell Type	Subject ID	Ethnicity	Subject Phenotype
S9M011N5_A7	BLOOD	S9M011N5_A7	Caucasian (Danish)	Control
S9M011N1_D8	BLOOD	S9M011N1_D8	Caucasian (Danish)	Control
S9M011N1_D10	BLOOD	S9M011N1_D10	Caucasian (Danish)	Control
S9M011N1_F7	BLOOD	S9M011N1_F7	Caucasian (Danish)	Control
S9M011N1_C7	BLOOD	S9M011N1_C7	Caucasian (Danish)	Control
S9M011N1_E3	BLOOD	S9M011N1_E3	Caucasian (Danish)	Control
S9M011N1_D5	BLOOD	S9M011N1_D5	Caucasian (Danish)	Control
S9M011N1_A4	BLOOD	S9M011N1_A4	Caucasian (Danish)	Control
S9M011N1_H11	BLOOD	S9M011N1_H11	Caucasian (Danish)	Control
S9M011N1_B4	BLOOD	S9M011N1_B4	Caucasian (Danish)	Control
S9M011N1_A11	BLOOD	S9M011N1_A11	Caucasian (Danish)	Control
S9M011N1_F5	BLOOD	S9M011N1_F5	Caucasian (Danish)	Control
S9M011N1_C5	BLOOD	S9M011N1_C5	Caucasian (Danish)	Control
S9M011N1_E1	BLOOD	S9M011N1_E1	Caucasian (Danish)	Control
S9M011N1_D2	BLOOD	S9M011N1_D2	Caucasian (Danish)	Control
S9M011N1_E9	BLOOD	S9M011N1_E9	Caucasian (Danish)	Control
S9M011N1_E10	BLOOD	S9M011N1_E10	Caucasian (Danish)	Control
S9M011N1_B3	BLOOD	S9M011N1_B3	Caucasian (Danish)	Control
S9M011N1_E6	BLOOD	S9M011N1_E6	Caucasian (Danish)	Control
S9M011N1_G2	BLOOD	S9M011N1_G2	Caucasian (Danish)	Control
S9M011N1_B5	BLOOD	S9M011N1_B5	Caucasian (Danish)	Control
S9M011N5_A6	BLOOD	S9M011N5_A6	Caucasian (Danish)	Control
S9M011N5_A2	BLOOD	S9M011N5_A2	Caucasian (Danish)	Control
S9M011N1_G10	BLOOD	S9M011N1_G10	Caucasian (Danish)	Control
S9M011N1_D1	BLOOD	S9M011N1_D1	Caucasian (Danish)	Control
S9M011N1_H10	BLOOD	S9M011N1_H10	Caucasian (Danish)	Control
S9M011N1_F4	BLOOD	S9M011N1_F4	Caucasian (Danish)	Control
S9M011N1_F1	BLOOD	S9M011N1_F1	Caucasian (Danish)	Control
S9M011N1_B2	BLOOD	S9M011N1_B2	Caucasian (Danish)	Control
S9M011N5_A9	BLOOD	S9M011N5_A9	Caucasian (Danish)	Control
S9M011N1_C2	BLOOD	S9M011N1_C2	Caucasian (Danish)	Control
S9M011N1_G11	BLOOD	S9M011N1_G11	Caucasian (Danish)	Control
S9M011N5_A12	BLOOD	S9M011N5_A12	Caucasian (Danish)	Control
S9M011N1_G6	BLOOD	S9M011N1_G6	Caucasian (Danish)	Control
S9M011N1_E2	BLOOD	S9M011N1_E2	Caucasian (Danish)	Control
S9M011N1_C3	BLOOD	S9M011N1_C3	Caucasian (Danish)	Control
S9M011N1_H1	BLOOD	S9M011N1_H1	Caucasian (Danish)	Control
S9M011N1_B12	BLOOD	S9M011N1_B12	Caucasian (Danish)	Control
S9M011N1_D12	BLOOD	S9M011N1_D12	Caucasian (Danish)	Control
S9M011N1_C12	BLOOD	S9M011N1_C12	Caucasian (Danish)	Control
S9M011N1_A2	BLOOD	S9M011N1_A2	Caucasian (Danish)	Control
S9M011N5_A10	BLOOD	S9M011N5_A10	Caucasian (Danish)	Control
S9M011N1_F8	BLOOD	S9M011N1_F8	Caucasian (Danish)	Control
S9M011N1_D11	BLOOD	S9M011N1_D11	Caucasian (Danish)	Control
S9M011N1_C1	BLOOD	S9M011N1_C1	Caucasian (Danish)	Control
S9M011N1_F2	BLOOD	S9M011N1_F2	Caucasian (Danish)	Control
S9M011N5_A1	BLOOD	S9M011N5_A1	Caucasian (Danish)	Control
S9M011N1_H4	BLOOD	S9M011N1_H4	Caucasian (Danish)	Control
S9M011N1_G8	BLOOD	S9M011N1_G8	Caucasian (Danish)	Control
S9M011N1_A9	BLOOD	S9M011N1_A9	Caucasian (Danish)	Control
S9M011N1_A10	BLOOD	S9M011N1_A10	Caucasian (Danish)	Control
S9M011N1_A12	BLOOD	S9M011N1_A12	Caucasian (Danish)	Control
S9M011N1_F9	BLOOD	S9M011N1_F9	Caucasian (Danish)	Control
S9M011N1_F10	BLOOD	S9M011N1_F10	Caucasian (Danish)	Control
S9M011N1_H5	BLOOD	S9M011N1_H5	Caucasian (Danish)	Control
S9M011N1_D3	BLOOD	S9M011N1_D3	Caucasian (Danish)	Control
S9M011N1_C10	BLOOD	S9M011N1_C10	Caucasian (Danish)	Control
S9M011N1_B11	BLOOD	S9M011N1_B11	Caucasian (Danish)	Control
S9M011N1_H3	BLOOD	S9M011N1_H3	Caucasian (Danish)	Control
S9M011N1_A6	BLOOD	S9M011N1_A6	Caucasian (Danish)	Control
S9M011N1_A1	BLOOD	S9M011N1_A1	Caucasian (Danish)	Control
S9M011N1_B10	BLOOD	S9M011N1_B10	Caucasian (Danish)	Control
S9M011N1_G5	BLOOD	S9M011N1_G5	Caucasian (Danish)	Control
S9M011N5_A5	BLOOD	S9M011N5_A5	Caucasian (Danish)	Control
S9M011N1_E8	BLOOD	S9M011N1_E8	Caucasian (Danish)	Control
S9M011N1_H7	BLOOD	S9M011N1_H7	Caucasian (Danish)	Control
S9M011N1_H2	BLOOD	S9M011N1_H2	Caucasian (Danish)	Control
S9M011N5_A11	BLOOD	S9M011N5_A11	Caucasian (Danish)	Control
S9M011N1_H8	BLOOD	S9M011N1_H8	Caucasian (Danish)	Control
S9M011N1_G3	BLOOD	S9M011N1_G3	Caucasian (Danish)	Control
S9M011N1_E5	BLOOD	S9M011N1_E5	Caucasian (Danish)	Control
S9M011N1_A3	BLOOD	S9M011N1_A3	Caucasian (Danish)	Control
S9M011N5_A3	BLOOD	S9M011N5_A3	Caucasian (Danish)	Control
S9M011N1_E11	BLOOD	S9M011N1_E11	Caucasian (Danish)	Control
S9M011N1_C8	BLOOD	S9M011N1_C8	Caucasian (Danish)	Control
S9M011N1_A7	BLOOD	S9M011N1_A7	Caucasian (Danish)	Control
S9M011N1_D9	BLOOD	S9M011N1_D9	Caucasian (Danish)	Control
S9M011N1_C11	BLOOD	S9M011N1_C11	Caucasian (Danish)	Control
S9M011N1_D6	BLOOD	S9M011N1_D6	Caucasian (Danish)	Control
S9M011N1_F11	BLOOD	S9M011N1_F11	Caucasian (Danish)	Control
S9M011N1_B6	BLOOD	S9M011N1_B6	Caucasian (Danish)	Control
S9M011N1_G9	BLOOD	S9M011N1_G9	Caucasian (Danish)	Control
S9M011N1_F6	BLOOD	S9M011N1_F6	Caucasian (Danish)	Control
S9M011N1_E7	BLOOD	S9M011N1_E7	Caucasian (Danish)	Control
S9M011N1_D7	BLOOD	S9M011N1_D7	Caucasian (Danish)	Control
S9M011N1_B9	BLOOD	S9M011N1_B9	Caucasian (Danish)	Control
S9M011N1_C4	BLOOD	S9M011N1_C4	Caucasian (Danish)	Control
S9M011N5_A4	BLOOD	S9M011N5_A4	Caucasian (Danish)	Control
S9M011N1_C6	BLOOD	S9M011N1_C6	Caucasian (Danish)	Control
S9M011N1_G7	BLOOD	S9M011N1_G7	Caucasian (Danish)	Control
S9M011N1_E4	BLOOD	S9M011N1_E4	Caucasian (Danish)	Control
S9M011N1_B8	BLOOD	S9M011N1_B8	Caucasian (Danish)	Control
S9M011N1_G4	BLOOD	S9M011N1_G4	Caucasian (Danish)	Control
S9M011N1_F3	BLOOD	S9M011N1_F3	Caucasian (Danish)	Control
S9M011N1_A5	BLOOD	S9M011N1_A5	Caucasian (Danish)	Control
S9M011N1_H9	BLOOD	S9M011N1_H9	Caucasian (Danish)	Control
S9M011N1_C9	BLOOD	S9M011N1_C9	Caucasian (Danish)	Control
S9M011N1_B7	BLOOD	S9M011N1_B7	Caucasian (Danish)	Control
S9M011N5_A8	BLOOD	S9M011N5_A8	Caucasian (Danish)	Control
S9M011N1_H6	BLOOD	S9M011N1_H6	Caucasian (Danish)	Control

Sampleset ID:: 6
Name:: Human Random Control collection
Sampleset Type:: Control
Description:: Random controls of unknown phenotype available from European Collection of Cell Cultures
Size:: 480
Organisms:: Homo sapiens
Sampleset Phenotype(s):: Control

Samples for sampleset 6 (displaying 100 of the 480 samples)
Sample ID	Cell Type	Subject ID	Sex	Ethnicity	Subject Age	Subject Phenotype
C0047	Lymphoblastoid cell lines	C0047	Male	Caucasian	39 years	Control
C0107	Lymphoblastoid cell lines	C0107	Male	Caucasian	33 years	Control
C0126	Lymphoblastoid cell lines	C0126	Female	Caucasian	24 years	Control
C0100	Lymphoblastoid cell lines	C0100	Male	Caucasian	42 years	Control
C0029	Lymphoblastoid cell lines	C0029	Male	Caucasian		Control
C0106	Lymphoblastoid cell lines	C0106	Male	Caucasian	24 years	Control
C0008	Lymphoblastoid cell lines	C0008	Female	Caucasian	43 years	Control
C0091	Lymphoblastoid cell lines	C0091	Male	Caucasian	41 years	Control
C0082	Lymphoblastoid cell lines	C0082	Female	Caucasian	40 years	Control
C0092	Lymphoblastoid cell lines	C0092	Male	Caucasian		Control
C0020	Lymphoblastoid cell lines	C0020	Female	Caucasian		Control
C0055	Lymphoblastoid cell lines	C0055	Male	Caucasian	42 years	Control
C0001	Lymphoblastoid cell lines	C0001	Male	Caucasian	34 years	Control
C0063	Lymphoblastoid cell lines	C0063	Female	Caucasian	46 years	Control
C0022	Lymphoblastoid cell lines	C0022	Female	Caucasian		Control
C0054	Lymphoblastoid cell lines	C0054	Male	Caucasian	42 years	Control
C0010	Lymphoblastoid cell lines	C0010	Male	Caucasian	28 years	Control
C0028	Lymphoblastoid cell lines	C0028	Male	Caucasian		Control
C0132	Lymphoblastoid cell lines	C0132	Male	Caucasian	42 years	Control
C0104	Lymphoblastoid cell lines	C0104	Female	Caucasian	43 years	Control
C0059	Lymphoblastoid cell lines	C0059	Male	Caucasian	52 years	Control
C0145	Lymphoblastoid cell lines	C0145	Female	Caucasian	31 years	Control
C0049	Lymphoblastoid cell lines	C0049	Male	Caucasian	43 years	Control
C0129	Lymphoblastoid cell lines	C0129	Female	Caucasian		Control
C0138	Lymphoblastoid cell lines	C0138	Male	Caucasian	40 years	Control
C0111	Lymphoblastoid cell lines	C0111	Female	Caucasian		Control
C0018	Lymphoblastoid cell lines	C0018	Male	Caucasian	36 years	Control
C0123	Lymphoblastoid cell lines	C0123	Male	Caucasian	49 years	Control
C0039	Lymphoblastoid cell lines	C0039	Male	Caucasian	40 years	Control
C0125	Lymphoblastoid cell lines	C0125	Female	Caucasian	28 years	Control
C0085	Lymphoblastoid cell lines	C0085	Male	Caucasian	37 years	Control
C0137	Lymphoblastoid cell lines	C0137	Male	Caucasian	33 years	Control
C0143	Lymphoblastoid cell lines	C0143	Male	Caucasian	33 years	Control
C0117	Lymphoblastoid cell lines	C0117	Female	Caucasian		Control
C0131	Lymphoblastoid cell lines	C0131	Female	Caucasian	31 years	Control
C0144	Lymphoblastoid cell lines	C0144	Male	Caucasian	42 years	Control
C0150	Lymphoblastoid cell lines	C0150	Male	Caucasian	43 years	Control
C0112	Lymphoblastoid cell lines	C0112	Male	Caucasian	25 years	Control
C0133	Lymphoblastoid cell lines	C0133	Male	Caucasian		Control
C0073	Lymphoblastoid cell lines	C0073	Female	Caucasian	31 years	Control
C0134	Lymphoblastoid cell lines	C0134	Male	Caucasian	48 years	Control
C0012	Lymphoblastoid cell lines	C0012	Male	Caucasian		Control
C0032	Lymphoblastoid cell lines	C0032	Male	Caucasian		Control
C0147	Lymphoblastoid cell lines	C0147	Male	Caucasian	39 years	Control
C0046	Lymphoblastoid cell lines	C0046	Female	Caucasian	34 years	Control
C0024	Lymphoblastoid cell lines	C0024	Male	Caucasian		Control
C0098	Lymphoblastoid cell lines	C0098	Male	Caucasian	27 years	Control
C0121	Lymphoblastoid cell lines	C0121	Male	Caucasian	42 years	Control
C0090	Lymphoblastoid cell lines	C0090	Male	Caucasian	61 years	Control
C0007	Lymphoblastoid cell lines	C0007	Male	Caucasian	55 years	Control
C0070	Lymphoblastoid cell lines	C0070	Male	Caucasian	52 years	Control
C0027	Lymphoblastoid cell lines	C0027	Female	Caucasian		Control
C0034	Lymphoblastoid cell lines	C0034	Male	Caucasian		Control
C0149	Lymphoblastoid cell lines	C0149	Male	Caucasian	42 years	Control
C0004	Lymphoblastoid cell lines	C0004	Male	Caucasian	28 years	Control
C0127	Lymphoblastoid cell lines	C0127	Male	Caucasian	43 years	Control
C0142	Lymphoblastoid cell lines	C0142	Male	Caucasian	44 years	Control
C0068	Lymphoblastoid cell lines	C0068	Male	Caucasian	35 years	Control
C0005	Lymphoblastoid cell lines	C0005	Male	Caucasian		Control
C0041	Lymphoblastoid cell lines	C0041	Male	Caucasian	41 years	Control
C0003	Lymphoblastoid cell lines	C0003	Female	Caucasian	35 years	Control
C0069	Lymphoblastoid cell lines	C0069	Male	Caucasian	51 years	Control
C0093	Lymphoblastoid cell lines	C0093	Female	Caucasian		Control
C0065	Lymphoblastoid cell lines	C0065	Female	Caucasian	40 years	Control
C0016	Lymphoblastoid cell lines	C0016	Female	Caucasian		Control
C0045	Lymphoblastoid cell lines	C0045	Female	Caucasian	25 years	Control
C0009	Lymphoblastoid cell lines	C0009	Female	Caucasian	34 years	Control
C0035	Lymphoblastoid cell lines	C0035	Female	Caucasian		Control
C0052	Lymphoblastoid cell lines	C0052	Male	Caucasian	30 years	Control
C0066	Lymphoblastoid cell lines	C0066	Male	Caucasian	32 years	Control
C0030	Lymphoblastoid cell lines	C0030	Male	Caucasian		Control
C0074	Lymphoblastoid cell lines	C0074	Male	Caucasian	34 years	Control
C0139	Lymphoblastoid cell lines	C0139	Female	Caucasian	39 years	Control
C0088	Lymphoblastoid cell lines	C0088	Male	Caucasian	34 years	Control
C0081	Lymphoblastoid cell lines	C0081	Female	Caucasian	40 years	Control
C0060	Lymphoblastoid cell lines	C0060	Male	Caucasian	37 years	Control
C0058	Lymphoblastoid cell lines	C0058	Female	Caucasian	42 years	Control
C0097	Lymphoblastoid cell lines	C0097	Female	Caucasian	28 years	Control
C0006	Lymphoblastoid cell lines	C0006	Female	Caucasian	30 years	Control
C0080	Lymphoblastoid cell lines	C0080	Female	Caucasian	40 years	Control
C0013	Lymphoblastoid cell lines	C0013	Female	Caucasian	39 years	Control
C0036	Lymphoblastoid cell lines	C0036	Female	Caucasian	26 years	Control
C0040	Lymphoblastoid cell lines	C0040	Female	Caucasian	36 years	Control
C0037	Lymphoblastoid cell lines	C0037	Male	Caucasian	32 years	Control
C0043	Lymphoblastoid cell lines	C0043	Male	Caucasian		Control
C0116	Lymphoblastoid cell lines	C0116	Female	Caucasian	28 years	Control
C0108	Lymphoblastoid cell lines	C0108	Male	Caucasian	36 years	Control
C0146	Lymphoblastoid cell lines	C0146	Female	Caucasian	41 years	Control
C0038	Lymphoblastoid cell lines	C0038	Female	Caucasian	47 years	Control
C0084	Lymphoblastoid cell lines	C0084	Male	Caucasian	49 years	Control
C0002	Lymphoblastoid cell lines	C0002	Male	Caucasian	34 years	Control
C0095	Lymphoblastoid cell lines	C0095	Female	Caucasian		Control
C0075	Lymphoblastoid cell lines	C0075	Female	Caucasian	35 years	Control
C0136	Lymphoblastoid cell lines	C0136	Female	Caucasian	36 years	Control
C0124	Lymphoblastoid cell lines	C0124	Male	Caucasian		Control
C0053	Lymphoblastoid cell lines	C0053	Male	Caucasian	53 years	Control
C0135	Lymphoblastoid cell lines	C0135	Female	Caucasian	39 years	Control
C0019	Lymphoblastoid cell lines	C0019	Male	Caucasian	48 years	Control
C0140	Lymphoblastoid cell lines	C0140	Female	Caucasian	40 years	Control
C0042	Lymphoblastoid cell lines	C0042	Male	Caucasian	52 years	Control

Sampleset ID:: 7
Name:: WTCCC Crohn's disease samples
Sampleset Type:: Case
Description:: Crohn's disease samples from the Wellcome Trust Case Controol consortium. Note that there is some overlap with the samples in sample set 1
Size:: 2,015
Organisms:: Homo sapiens
Sampleset Phenotype(s):: Crohn's disease

Samples for sampleset 7 (displaying 100 of the 2015 samples)
Sample ID	Subject ID	Ethnicity	Subject Phenotype
WTCCC113591	WTCCC113591	British	Crohn's disease
WS554473	WS554473	British	Crohn's disease
WS553908	WS553908	British	Crohn's disease
WTCCC113641	WTCCC113641	British	Crohn's disease
WTCCC113617	WTCCC113617	British	Crohn's disease
WS554447	WS554447	British	Crohn's disease
WS554732	WS554732	British	Crohn's disease
WS554439	WS554439	British	Crohn's disease
WS554748	WS554748	British	Crohn's disease
WS554252	WS554252	British	Crohn's disease
WS554234_repeat_1	WS554234_repeat_1	British	Crohn's disease
WS554446_repeat_1	WS554446_repeat_1	British	Crohn's disease
WS554187	WS554187	British	Crohn's disease
WS554198	WS554198	British	Crohn's disease
WTCCC113642	WTCCC113642	British	Crohn's disease
WS554143_repeat_1	WS554143_repeat_1	British	Crohn's disease
WS554254	WS554254	British	Crohn's disease
WS554512	WS554512	British	Crohn's disease
WS554243	WS554243	British	Crohn's disease
WS554509_repeat_1	WS554509_repeat_1	British	Crohn's disease
WS554219	WS554219	British	Crohn's disease
WS554499_repeat_1	WS554499_repeat_1	British	Crohn's disease
WS554141	WS554141	British	Crohn's disease
WTCCC113621	WTCCC113621	British	Crohn's disease
WS554461_repeat_1	WS554461_repeat_1	British	Crohn's disease
WS554426	WS554426	British	Crohn's disease
WS554481	WS554481	British	Crohn's disease
WTCCC113620	WTCCC113620	British	Crohn's disease
WTCCC113623	WTCCC113623	British	Crohn's disease
WTCCC113613	WTCCC113613	British	Crohn's disease
WS554249	WS554249	British	Crohn's disease
WS554440	WS554440	British	Crohn's disease
WTCCC113587	WTCCC113587	British	Crohn's disease
WS554462_repeat_1	WS554462_repeat_1	British	Crohn's disease
WS554161	WS554161	British	Crohn's disease
WS554422	WS554422	British	Crohn's disease
WTCCC113605	WTCCC113605	British	Crohn's disease
WTCCC113634	WTCCC113634	British	Crohn's disease
WS554464	WS554464	British	Crohn's disease
WTCCC113586	WTCCC113586	British	Crohn's disease
WTCCC113585	WTCCC113585	British	Crohn's disease
WS554160	WS554160	British	Crohn's disease
WTCCC113627	WTCCC113627	British	Crohn's disease
WS554427	WS554427	British	Crohn's disease
WS554438	WS554438	British	Crohn's disease
WS554135	WS554135	British	Crohn's disease
WS554185	WS554185	British	Crohn's disease
WS553896	WS553896	British	Crohn's disease
WTCCC113630_repeat_1	WTCCC113630_repeat_1	British	Crohn's disease
WS554496	WS554496	British	Crohn's disease
WS553920	WS553920	British	Crohn's disease
WS554177	WS554177	British	Crohn's disease
WS554735	WS554735	British	Crohn's disease
WS554210	WS554210	British	Crohn's disease
WS554450	WS554450	British	Crohn's disease
WS554425	WS554425	British	Crohn's disease
WS554474	WS554474	British	Crohn's disease
WS554453	WS554453	British	Crohn's disease
WS554424	WS554424	British	Crohn's disease
WS554483_repeat_1	WS554483_repeat_1	British	Crohn's disease
WS554511_repeat_1	WS554511_repeat_1	British	Crohn's disease
WS554783	WS554783	British	Crohn's disease
WS554232	WS554232	British	Crohn's disease
WS554463	WS554463	British	Crohn's disease
WS554487	WS554487	British	Crohn's disease
WTCCC113640	WTCCC113640	British	Crohn's disease
WS554449_repeat_1	WS554449_repeat_1	British	Crohn's disease
WS554475	WS554475	British	Crohn's disease
WS554214	WS554214	British	Crohn's disease
WS554155_repeat_1	WS554155_repeat_1	British	Crohn's disease
WS554452	WS554452	British	Crohn's disease
WS554168	WS554168	British	Crohn's disease
WS554737	WS554737	British	Crohn's disease
WS554428	WS554428	British	Crohn's disease
WTCCC113607	WTCCC113607	British	Crohn's disease
WS554459_repeat_1	WS554459_repeat_1	British	Crohn's disease
WS554510	WS554510	British	Crohn's disease
WTCCC113615	WTCCC113615	British	Crohn's disease
WTCCC113602	WTCCC113602	British	Crohn's disease
WTCCC113614	WTCCC113614	British	Crohn's disease
WTCCC113583	WTCCC113583	British	Crohn's disease
WS554497_repeat_1	WS554497_repeat_1	British	Crohn's disease
WTCCC113604	WTCCC113604	British	Crohn's disease
WS554202	WS554202	British	Crohn's disease
WS554441	WS554441	British	Crohn's disease
WS554482_repeat_1	WS554482_repeat_1	British	Crohn's disease
WS554429	WS554429	British	Crohn's disease
WS554451	WS554451	British	Crohn's disease
WS554458	WS554458	British	Crohn's disease
WS554500	WS554500	British	Crohn's disease
WS554498	WS554498	British	Crohn's disease
WS554437	WS554437	British	Crohn's disease
WS554780	WS554780	British	Crohn's disease
WS554240	WS554240	British	Crohn's disease
WS554472	WS554472	British	Crohn's disease
WS554508	WS554508	British	Crohn's disease
WS554253	WS554253	British	Crohn's disease
WS554251	WS554251	British	Crohn's disease
WS554457	WS554457	British	Crohn's disease
WS554485	WS554485	British	Crohn's disease

Sampleset ID:: 8
Name:: WTCCC Control samples
Sampleset Type:: Control
Description:: Random controls of unknown phenotype from the national blood service and 1958 cohort
Size:: 3,093
Organisms:: Homo sapiens
Sampleset Phenotype(s):: control

Samples for sampleset 8 (displaying 100 of the 3093 samples)
Sample ID	Subject ID	Ethnicity	Subject Phenotype
WTCCC125713	WTCCC125713	British	control
WTCCC125698	WTCCC125698	British	control
WTCCC125652	WTCCC125652	British	control
WTCCC125780	WTCCC125780	British	control
WTCCC125769	WTCCC125769	British	control
WTCCC125664	WTCCC125664	British	control
WTCCC125744	WTCCC125744	British	control
WTCCC125768	WTCCC125768	British	control
WTCCC125771	WTCCC125771	British	control
WTCCC125678	WTCCC125678	British	control
WTCCC125753	WTCCC125753	British	control
WTCCC125686	WTCCC125686	British	control
WTCCC125763	WTCCC125763	British	control
WTCCC125764	WTCCC125764	British	control
WTCCC125754	WTCCC125754	British	control
WTCCC125747	WTCCC125747	British	control
WTCCC125712	WTCCC125712	British	control
WTCCC125651	WTCCC125651	British	control
WTCCC125649	WTCCC125649	British	control
WTCCC125756	WTCCC125756	British	control
WTCCC125675	WTCCC125675	British	control
WTCCC125638	WTCCC125638	British	control
WTCCC125790	WTCCC125790	British	control
WTCCC125742	WTCCC125742	British	control
WTCCC125672	WTCCC125672	British	control
WTCCC125662	WTCCC125662	British	control
WTCCC125791	WTCCC125791	British	control
WTCCC125786	WTCCC125786	British	control
WTCCC125774	WTCCC125774	British	control
WTCCC125673	WTCCC125673	British	control
WTCCC125709	WTCCC125709	British	control
WTCCC125785	WTCCC125785	British	control
WTCCC125760	WTCCC125760	British	control
WTCCC125636	WTCCC125636	British	control
WTCCC125696	WTCCC125696	British	control
WTCCC125661	WTCCC125661	British	control
WTCCC125734	WTCCC125734	British	control
WTCCC125745	WTCCC125745	British	control
WTCCC125710	WTCCC125710	British	control
WTCCC125724	WTCCC125724	British	control
WTCCC125637	WTCCC125637	British	control
WTCCC125782	WTCCC125782	British	control
WTCCC125773	WTCCC125773	British	control
WTCCC125766	WTCCC125766	British	control
WTCCC125723	WTCCC125723	British	control
WTCCC125677	WTCCC125677	British	control
WTCCC125688	WTCCC125688	British	control
WTCCC125653	WTCCC125653	British	control
WTCCC125789	WTCCC125789	British	control
WTCCC125775	WTCCC125775	British	control
WTCCC125743	WTCCC125743	British	control
WTCCC125665	WTCCC125665	British	control
WTCCC125750	WTCCC125750	British	control
WTCCC125736	WTCCC125736	British	control
WTCCC125737	WTCCC125737	British	control
WTCCC125721	WTCCC125721	British	control
WTCCC125700	WTCCC125700	British	control
WTCCC125792	WTCCC125792	British	control
WTCCC125751	WTCCC125751	British	control
WTCCC125781	WTCCC125781	British	control
WTCCC125735	WTCCC125735	British	control
WTCCC125711	WTCCC125711	British	control
WTCCC125640	WTCCC125640	British	control
WTCCC125738	WTCCC125738	British	control
WTCCC125666	WTCCC125666	British	control
WTCCC125770	WTCCC125770	British	control
WTCCC125761	WTCCC125761	British	control
WTCCC125701	WTCCC125701	British	control
WTCCC125642	WTCCC125642	British	control
WTCCC125783	WTCCC125783	British	control
WTCCC125732	WTCCC125732	British	control
WTCCC125639	WTCCC125639	British	control
WTCCC125759	WTCCC125759	British	control
WTCCC125687	WTCCC125687	British	control
WTCCC125784	WTCCC125784	British	control
WTCCC125654	WTCCC125654	British	control
WTCCC125740	WTCCC125740	British	control
WTCCC125776	WTCCC125776	British	control
WTCCC125676	WTCCC125676	British	control
WTCCC125641	WTCCC125641	British	control
WTCCC125648	WTCCC125648	British	control
WTCCC125787	WTCCC125787	British	control
WTCCC125739	WTCCC125739	British	control
WTCCC125749	WTCCC125749	British	control
WTCCC125699	WTCCC125699	British	control
WTCCC125733	WTCCC125733	British	control
WTCCC125741	WTCCC125741	British	control
WTCCC125690	WTCCC125690	British	control
WTCCC125746	WTCCC125746	British	control
WTCCC125697	WTCCC125697	British	control
WTCCC125660	WTCCC125660	British	control
WTCCC125650	WTCCC125650	British	control
WTCCC125663	WTCCC125663	British	control
WTCCC125762	WTCCC125762	British	control
WTCCC125757	WTCCC125757	British	control
WTCCC125685	WTCCC125685	British	control
WTCCC125758	WTCCC125758	British	control
WTCCC125684	WTCCC125684	British	control
WTCCC125772	WTCCC125772	British	control
WTCCC125674	WTCCC125674	British	control

Sampleset ID:: 9
Name:: HapMap Control samples
Sampleset Type:: Control
Description:: Control DNAs from the HapMap panels
Size:: 8
Organisms:: Homo sapiens
Sampleset Phenotype(s):: control

Samples for sampleset 9
Sample ID	Cell Type	Subject ID	Sex	Ethnicity	Subject Phenotype
NA18555	Lymphoblastoid cell lines	NA18555	Female	HAN CHINESE	control
NA18956	Lymphoblastoid cell lines	NA18956	Female	Japanese	control
NA12044	Lymphoblastoid cell lines	NA12044	Female	CAUCASIAN (UTAH)	control
NA12752	Lymphoblastoid cell lines	NA12752	Male	CAUCASIAN (UTAH)	control
NA10855	Lymphoblastoid cell lines	NA10855	Female	CAUCASIAN (UTAH)	control
NA18507	Lymphoblastoid cell lines	NA18507	Male	YORUBA	control
NA07056	Lymphoblastoid cell lines	NA07056	Female	CAUCASIAN (UTAH)	control
NA18517	Lymphoblastoid cell lines	NA18517	Female	YORUBA	control

Experimental Details

Experiment ID	Type	Method	Analysis	Number of Variant Calls
1	Discovery	qPCR	Probe signal intensity	2,788
2	Discovery	qPCR	Probe signal intensity	2,788
3	Discovery	Oligo aCGH	Probe signal intensity	5,108

dbVar

Database of genomic structural variation

nstd77 (Polley et al. 2016)

Links

Detailed Information: Download 2 Variant Regions, Download 10684 Variant Calls, Download Both, FTP

Variant Summary

Assembly used for analysis:
Remapped: GRCh38.p12 (hg38)
Submitted: GRCh37 (hg19)

Variant Summary for:

Remapping summary:

Samplesets

Number of Samplesets: 9

Experimental Details

Validations

No validation data were submitted for this study.

dbVar

Database of genomic structural variation

nstd77 (Polley et al. 2016)

Links

Detailed Information: Download 2 Variant Regions, Download 10684 Variant Calls, Download Both, FTP

Variant Summary

Variant Summary for: GRCh38.p12 (hg38)GRCh37 (hg19)

Remapping summary: GRCh37->GRCh38.p12

Samplesets

Number of Samplesets: 9

Experimental Details

Validations

No validation data were submitted for this study.

Variant Summary for:

Remapping summary: