nstd55 - Zhu et al 2011 - dbVar Study

nstd55 (Zhu et al. 2011)

Organism:: Human
Study Type:: Control Set
Submitter:: Xue Zhang
Description:: We used a PCR-based sequencing method to detect deletions mediated by a human-specific palindromic sequence in 740 individuals of different ethnic origins. See Variant Summary counts for nstd55 in dbVar Variant Summary.
Publication(s):: Zhu et al. 2011

Links

Source: NCBI

Detailed Information: Download 7 Variant Regions, Download 9 Variant Calls, Download Both, FTP

Variant Summary
Samplesets
Experimental Details
Validations

Variant Summary

Assembly used for analysis:
Remapped: GRCh38.p12 (hg38)
Submitted: GRCh37 (hg19)

Variant Summary for:

Sequence ID	Chr	Number of Variant Regions	Number of Variant Calls	Placement type	Link to graphical display
NC_000023.11	ChrX	7	9	Remapped	NC_000023.11

Sequence ID	Chr	Number of Variant Regions	Number of Variant Calls	Placement type	Link to graphical display
NC_000023.10	ChrX	7	9	Submitted	NC_000023.10

Remapping summary:

			Variant Region remap status						Variant Call remap status
Sequence ID	Chr	Variant Regions on source	Perfect	Good	Pass	Fail	Mult	Variant Calls on source	Perfect	Good	Pass	Fail	Mult
NC_000023.10	ChrX	7	7	0	0	0	0	9	9	0	0	0	0

Samplesets

Number of Samplesets: 1

Size:: 740
Organisms:: Homo sapiens
Sampleset Phenotype(s):: None reported

Samples for sampleset 1 (displaying 100 of the 740 samples)
Sample ID	Subject ID	Sex	Ethnicity	Subject Phenotype
156CA	156CA	Male	Mexican	Not reported
10CA	10CA	Male	Mexican	Not reported
167CA	167CA	Male	Mexican	Not reported
162CA	162CA	Male	Mexican	Not reported
105CA	105CA	Male	Mexican	Not reported
101CA	101CA	Male	Mexican	Not reported
02CA	02CA	Male	Mexican	Not reported
108CA	108CA	Male	Mexican	Not reported
06CA	06CA	Male	Mexican	Not reported
122CA	122CA	Male	Mexican	Not reported
123CA	123CA	Male	Mexican	Not reported
153CA	153CA	Male	Mexican	Not reported
124CA	124CA	Male	Mexican	Not reported
141CA	141CA	Male	Mexican	Not reported
125CA	125CA	Male	Mexican	Not reported
113CA	113CA	Male	Mexican	Not reported
116CA	116CA	Male	Mexican	Not reported
159CA	159CA	Male	Mexican	Not reported
131CA	131CA	Male	Mexican	Not reported
08CA	08CA	Male	Mexican	Not reported
135CA	135CA	Male	Mexican	Not reported
120CA	120CA	Male	Mexican	Not reported
128CA	128CA	Male	Mexican	Not reported
161CA	161CA	Male	Mexican	Not reported
04CA	04CA	Male	Mexican	Not reported
10	10	Male	Chinese	Not reported
11	11	Male	Chinese	Not reported
12	12	Male	Chinese	Not reported
13	13	Male	Chinese	Not reported
14	14	Male	Chinese	Not reported
15	15	Male	Chinese	Not reported
16	16	Male	Chinese	Not reported
100	100	Male	Chinese	Not reported
101	101	Male	Chinese	Not reported
102	102	Male	Chinese	Not reported
103	103	Male	Chinese	Not reported
104	104	Male	Chinese	Not reported
105	105	Male	Chinese	Not reported
106	106	Male	Chinese	Not reported
107	107	Male	Chinese	Not reported
108	108	Male	Chinese	Not reported
109	109	Male	Chinese	Not reported
110	110	Male	Chinese	Not reported
111	111	Male	Chinese	Not reported
112	112	Male	Chinese	Not reported
113	113	Male	Chinese	Not reported
114	114	Male	Chinese	Not reported
115	115	Male	Chinese	Not reported
116	116	Male	Chinese	Not reported
117	117	Male	Chinese	Not reported
118	118	Male	Chinese	Not reported
119	119	Male	Chinese	Not reported
120	120	Male	Chinese	Not reported
121	121	Male	Chinese	Not reported
122	122	Male	Chinese	Not reported
123	123	Male	Chinese	Not reported
124	124	Male	Chinese	Not reported
125	125	Male	Chinese	Not reported
126	126	Male	Chinese	Not reported
127	127	Male	Chinese	Not reported
128	128	Male	Chinese	Not reported
129	129	Male	Chinese	Not reported
130	130	Male	Chinese	Not reported
131	131	Male	Chinese	Not reported
132	132	Male	Chinese	Not reported
133	133	Male	Chinese	Not reported
134	134	Male	Chinese	Not reported
135	135	Male	Chinese	Not reported
136	136	Male	Chinese	Not reported
137	137	Male	Chinese	Not reported
138	138	Male	Chinese	Not reported
139	139	Male	Chinese	Not reported
140	140	Male	Chinese	Not reported
141	141	Male	Chinese	Not reported
142	142	Male	Chinese	Not reported
143	143	Male	Chinese	Not reported
144	144	Male	Chinese	Not reported
145	145	Male	Chinese	Not reported
146	146	Male	Chinese	Not reported
147	147	Male	Chinese	Not reported
148	148	Male	Chinese	Not reported
149	149	Male	Chinese	Not reported
150	150	Male	Chinese	Not reported
151	151	Male	Chinese	Not reported
152	152	Male	Chinese	Not reported
153	153	Male	Chinese	Not reported
154	154	Male	Chinese	Not reported
155	155	Male	Chinese	Not reported
156	156	Male	Chinese	Not reported
157	157	Male	Chinese	Not reported
158	158	Male	Chinese	Not reported
159	159	Male	Chinese	Not reported
160	160	Male	Chinese	Not reported
161	161	Male	Chinese	Not reported
162	162	Male	Chinese	Not reported
163	163	Male	Chinese	Not reported
164	164	Male	Chinese	Not reported
165	165	Male	Chinese	Not reported
166	166	Male	Chinese	Not reported
167	167	Male	Chinese	Not reported

Experimental Details

Experiment ID	Type	Method	Analysis	Number of Variant Calls
1	Discovery	Sequencing	Sequence alignment	9

dbVar

Database of genomic structural variation

nstd55 (Zhu et al. 2011)

Links

Detailed Information: Download 7 Variant Regions, Download 9 Variant Calls, Download Both, FTP

Variant Summary

Assembly used for analysis:
Remapped: GRCh38.p12 (hg38)
Submitted: GRCh37 (hg19)

Variant Summary for:

Remapping summary:

Samplesets

Number of Samplesets: 1

Experimental Details

Validations

No validation data were submitted for this study.

dbVar

Database of genomic structural variation

nstd55 (Zhu et al. 2011)

Links

Detailed Information: Download 7 Variant Regions, Download 9 Variant Calls, Download Both, FTP

Variant Summary

Variant Summary for: GRCh38.p12 (hg38)GRCh37 (hg19)

Remapping summary: GRCh37->GRCh38.p12

Samplesets

Number of Samplesets: 1

Experimental Details

Validations

No validation data were submitted for this study.

Variant Summary for:

Remapping summary: