nstd54 (Cooper et al. 2011)
- Organism:
- Human
- Study Type:
- Case-Control
- Submitter:
- Evan Eichler
- Description:
- Copy Number Variants from 15,767 cases of Developmental Delay and Intellectual Disability from Signature Genomics, and 8329 Control Samples. This study contains samples in common with Coe et al. 2014. Due to analysis differences (see manuscripts) please use the case samples (Sampleset 1) from only one of these submissions. Control sample sets do not overlap and may be combined. See Variant Summary counts for nstd54 in dbVar Variant Summary.
- Publication(s):
- Cooper et al. 2011
Detailed Information: Download 81345 Variant Regions, Download 468909 Variant Calls, Download Both, FTP
Variant Summary
Assembly used for analysis:
Remapped: GRCh38.p12 (hg38)
Remapped: GRCh37.p13 (hg19)
Submitted: NCBI36 (hg18)
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.11 | Chr1 | 5,660 | 34,564 | Remapped | NC_000001.11 |
| NC_000002.12 | Chr2 | 5,525 | 35,212 | Remapped | NC_000002.12 |
| NC_000003.12 | Chr3 | 4,605 | 31,444 | Remapped | NC_000003.12 |
| NC_000004.12 | Chr4 | 4,027 | 35,188 | Remapped | NC_000004.12 |
| NC_000005.10 | Chr5 | 4,624 | 27,617 | Remapped | NC_000005.10 |
| NC_000006.12 | Chr6 | 5,396 | 32,216 | Remapped | NC_000006.12 |
| NC_000007.14 | Chr7 | 4,447 | 25,299 | Remapped | NC_000007.14 |
| NC_000008.11 | Chr8 | 4,024 | 24,686 | Remapped | NC_000008.11 |
| NC_000009.12 | Chr9 | 3,601 | 23,786 | Remapped | NC_000009.12 |
| NC_000010.11 | Chr10 | 3,474 | 24,333 | Remapped | NC_000010.11 |
| NC_000011.10 | Chr11 | 4,497 | 24,189 | Remapped | NC_000011.10 |
| NC_000012.12 | Chr12 | 4,686 | 21,212 | Remapped | NC_000012.12 |
| NC_000013.11 | Chr13 | 2,665 | 15,781 | Remapped | NC_000013.11 |
| NC_000014.9 | Chr14 | 3,836 | 15,139 | Remapped | NC_000014.9 |
| NC_000015.10 | Chr15 | 4,110 | 15,529 | Remapped | NC_000015.10 |
| NC_000016.10 | Chr16 | 3,456 | 14,095 | Remapped | NC_000016.10 |
| NC_000017.11 | Chr17 | 2,651 | 13,736 | Remapped | NC_000017.11 |
| NC_000018.10 | Chr18 | 2,044 | 13,591 | Remapped | NC_000018.10 |
| NC_000019.10 | Chr19 | 2,612 | 12,361 | Remapped | NC_000019.10 |
| NC_000020.11 | Chr20 | 1,943 | 10,037 | Remapped | NC_000020.11 |
| NC_000021.9 | Chr21 | 1,281 | 5,014 | Remapped | NC_000021.9 |
| NC_000022.11 | Chr22 | 1,553 | 7,449 | Remapped | NC_000022.11 |
| NT_187364.1 | Chr1|NT_187364.1 | 1 | 1 | Remapped | NT_187364.1 |
| NT_187367.1 | Chr1|NT_187367.1 | 3 | 3 | Remapped | NT_187367.1 |
| NT_187514.1 | Chr1|NT_187514.1 | 1 | 1 | Remapped | NT_187514.1 |
| NT_187515.1 | Chr1|NT_187515.1 | 18 | 18 | Remapped | NT_187515.1 |
| NT_187516.1 | Chr1|NT_187516.1 | 28 | 103 | Remapped | NT_187516.1 |
| NT_187517.1 | Chr1|NT_187517.1 | 4 | 5 | Remapped | NT_187517.1 |
| NT_187518.1 | Chr1|NT_187518.1 | 11 | 33 | Remapped | NT_187518.1 |
| NT_187519.1 | Chr1|NT_187519.1 | 16 | 263 | Remapped | NT_187519.1 |
| NT_187521.1 | Chr1|NT_187521.1 | 2 | 23 | Remapped | NT_187521.1 |
| NT_187646.1 | Chr1|NT_187646.1 | 10 | 32 | Remapped | NT_187646.1 |
| NW_003315905.1 | Chr1|NW_003315905.1 | 6 | 6 | Remapped | NW_003315905.1 |
| NW_003315907.2 | Chr1|NW_003315907.2 | 9 | 14 | Remapped | NW_003315907.2 |
| NW_009646194.1 | Chr1|NW_009646194.1 | 1 | 1 | Remapped | NW_009646194.1 |
| NW_009646195.1 | Chr1|NW_009646195.1 | 2 | 2 | Remapped | NW_009646195.1 |
| NW_011332687.1 | Chr1|NW_011332687.1 | 17 | 59 | Remapped | NW_011332687.1 |
| NW_011332688.1 | Chr1|NW_011332688.1 | 19 | 318 | Remapped | NW_011332688.1 |
| NW_012132914.1 | Chr1|NW_012132914.1 | 53 | 226 | Remapped | NW_012132914.1 |
| NW_014040927.1 | Chr1|NW_014040927.1 | 7 | 7 | Remapped | NW_014040927.1 |
| NW_015495298.1 | Chr1|NW_015495298.1 | 19 | 28 | Remapped | NW_015495298.1 |
| NW_017852928.1 | Chr1|NW_017852928.1 | 59 | 288 | Remapped | NW_017852928.1 |
| NW_018654706.1 | Chr1|NW_018654706.1 | 2 | 2 | Remapped | NW_018654706.1 |
| NW_018654707.1 | Chr1|NW_018654707.1 | 76 | 1,346 | Remapped | NW_018654707.1 |
| NW_018654708.1 | Chr1|NW_018654708.1 | 4 | 4 | Remapped | NW_018654708.1 |
| NT_187522.1 | Chr2|NT_187522.1 | 43 | 289 | Remapped | NT_187522.1 |
| NT_187523.1 | Chr2|NT_187523.1 | 163 | 553 | Remapped | NT_187523.1 |
| NT_187524.1 | Chr2|NT_187524.1 | 7 | 8 | Remapped | NT_187524.1 |
| NT_187525.1 | Chr2|NT_187525.1 | 26 | 58 | Remapped | NT_187525.1 |
| NT_187527.1 | Chr2|NT_187527.1 | 31 | 63 | Remapped | NT_187527.1 |
| NT_187528.1 | Chr2|NT_187528.1 | 1 | 1 | Remapped | NT_187528.1 |
| NT_187529.1 | Chr2|NT_187529.1 | 253 | 522 | Remapped | NT_187529.1 |
| NT_187530.1 | Chr2|NT_187530.1 | 1 | 1 | Remapped | NT_187530.1 |
| NT_187647.1 | Chr2|NT_187647.1 | 163 | 553 | Remapped | NT_187647.1 |
| NT_187648.1 | Chr2|NT_187648.1 | 11 | 17 | Remapped | NT_187648.1 |
| NW_003315908.1 | Chr2|NW_003315908.1 | 3 | 3 | Remapped | NW_003315908.1 |
| NW_003315909.1 | Chr2|NW_003315909.1 | 2 | 2 | Remapped | NW_003315909.1 |
| NW_011332689.1 | Chr2|NW_011332689.1 | 7 | 7 | Remapped | NW_011332689.1 |
| NW_011332690.1 | Chr2|NW_011332690.1 | 6 | 6 | Remapped | NW_011332690.1 |
| NW_012132915.1 | Chr2|NW_012132915.1 | 5 | 6 | Remapped | NW_012132915.1 |
| NW_018654709.1 | Chr2|NW_018654709.1 | 2 | 2 | Remapped | NW_018654709.1 |
| NT_187678.1 | Chr3|NT_187678.1 | 35 | 58 | Remapped | NT_187678.1 |
| NT_187688.1 | Chr3|NT_187688.1 | 34 | 48 | Remapped | NT_187688.1 |
| NT_187689.1 | Chr3|NT_187689.1 | 37 | 60 | Remapped | NT_187689.1 |
| NT_187690.1 | Chr3|NT_187690.1 | 35 | 58 | Remapped | NT_187690.1 |
| NT_187691.1 | Chr3|NT_187691.1 | 35 | 58 | Remapped | NT_187691.1 |
| NT_187532.1 | Chr3|NT_187532.1 | 37 | 60 | Remapped | NT_187532.1 |
| NT_187534.1 | Chr3|NT_187534.1 | 5 | 5 | Remapped | NT_187534.1 |
| NT_187535.1 | Chr3|NT_187535.1 | 1 | 1 | Remapped | NT_187535.1 |
| NT_187537.1 | Chr3|NT_187537.1 | 5 | 37 | Remapped | NT_187537.1 |
| NT_187538.1 | Chr3|NT_187538.1 | 3 | 3 | Remapped | NT_187538.1 |
| NT_187539.1 | Chr3|NT_187539.1 | 8 | 10 | Remapped | NT_187539.1 |
| NT_187649.1 | Chr3|NT_187649.1 | 34 | 48 | Remapped | NT_187649.1 |
| NW_009646197.1 | Chr3|NW_009646197.1 | 1 | 1 | Remapped | NW_009646197.1 |
| NW_009646198.1 | Chr3|NW_009646198.1 | 4 | 5 | Remapped | NW_009646198.1 |
| NW_011332691.1 | Chr3|NW_011332691.1 | 17 | 32 | Remapped | NW_011332691.1 |
| NW_017363813.1 | Chr3|NW_017363813.1 | 1 | 1 | Remapped | NW_017363813.1 |
| NW_018654711.1 | Chr3|NW_018654711.1 | 2 | 2 | Remapped | NW_018654711.1 |
| NW_019805488.1 | Chr3|NW_019805488.1 | 13 | 19 | Remapped | NW_019805488.1 |
| NW_019805489.1 | Chr3|NW_019805489.1 | 49 | 282 | Remapped | NW_019805489.1 |
| NW_019805490.1 | Chr3|NW_019805490.1 | 3 | 3 | Remapped | NW_019805490.1 |
| NW_019805492.1 | Chr3|NW_019805492.1 | 2 | 3 | Remapped | NW_019805492.1 |
| NT_187679.1 | Chr4|NT_187679.1 | 27 | 40 | Remapped | NT_187679.1 |
| NT_113793.3 | Chr4|NT_113793.3 | 4 | 4 | Remapped | NT_113793.3 |
| NT_167250.2 | Chr4|NT_167250.2 | 4 | 4 | Remapped | NT_167250.2 |
| NT_187540.1 | Chr4|NT_187540.1 | 5 | 5 | Remapped | NT_187540.1 |
| NT_187542.1 | Chr4|NT_187542.1 | 2 | 2 | Remapped | NT_187542.1 |
| NT_187543.1 | Chr4|NT_187543.1 | 8 | 12 | Remapped | NT_187543.1 |
| NT_187545.1 | Chr4|NT_187545.1 | 7 | 7 | Remapped | NT_187545.1 |
| NT_187650.1 | Chr4|NT_187650.1 | 10 | 15 | Remapped | NT_187650.1 |
| NW_003315915.1 | Chr4|NW_003315915.1 | 22 | 373 | Remapped | NW_003315915.1 |
| NW_013171799.1 | Chr4|NW_013171799.1 | 11 | 15 | Remapped | NW_013171799.1 |
| NW_013171800.1 | Chr4|NW_013171800.1 | 2 | 2 | Remapped | NW_013171800.1 |
| NW_013171801.1 | Chr4|NW_013171801.1 | 4 | 4 | Remapped | NW_013171801.1 |
| NW_017363814.1 | Chr4|NW_017363814.1 | 5 | 6 | Remapped | NW_017363814.1 |
| NT_187546.1 | Chr5|NT_187546.1 | 19 | 24 | Remapped | NT_187546.1 |
| NT_187547.1 | Chr5|NT_187547.1 | 26 | 34 | Remapped | NT_187547.1 |
| NT_187548.1 | Chr5|NT_187548.1 | 37 | 115 | Remapped | NT_187548.1 |
| NT_187550.1 | Chr5|NT_187550.1 | 17 | 22 | Remapped | NT_187550.1 |
| NT_187551.1 | Chr5|NT_187551.1 | 4 | 4 | Remapped | NT_187551.1 |
| NT_187651.1 | Chr5|NT_187651.1 | 40 | 46 | Remapped | NT_187651.1 |
| NT_187652.1 | Chr5|NT_187652.1 | 19 | 24 | Remapped | NT_187652.1 |
| NW_003315917.2 | Chr5|NW_003315917.2 | 1 | 1 | Remapped | NW_003315917.2 |
| NW_003315920.1 | Chr5|NW_003315920.1 | 6 | 7 | Remapped | NW_003315920.1 |
| NW_003571036.1 | Chr5|NW_003571036.1 | 3 | 4 | Remapped | NW_003571036.1 |
| NW_009646199.1 | Chr5|NW_009646199.1 | 3 | 3 | Remapped | NW_009646199.1 |
| NW_016107297.1 | Chr5|NW_016107297.1 | 49 | 161 | Remapped | NW_016107297.1 |
| NW_016107298.1 | Chr5|NW_016107298.1 | 178 | 735 | Remapped | NW_016107298.1 |
| NW_018654712.1 | Chr5|NW_018654712.1 | 3 | 3 | Remapped | NW_018654712.1 |
| NT_187692.1 | Chr6|NT_187692.1 | 2 | 2 | Remapped | NT_187692.1 |
| NT_167246.2 | Chr6|NT_167246.2 | 688 | 2,866 | Remapped | NT_167246.2 |
| NT_167247.2 | Chr6|NT_167247.2 | 330 | 1,433 | Remapped | NT_167247.2 |
| NT_167249.2 | Chr6|NT_167249.2 | 756 | 2,078 | Remapped | NT_167249.2 |
| NT_167245.2 | Chr6|NT_167245.2 | 266 | 825 | Remapped | NT_167245.2 |
| NT_113891.3 | Chr6|NT_113891.3 | 1 | 1 | Remapped | NT_113891.3 |
| NT_167244.2 | Chr6|NT_167244.2 | 46 | 66 | Remapped | NT_167244.2 |
| NT_187552.1 | Chr6|NT_187552.1 | 6 | 9 | Remapped | NT_187552.1 |
| NT_187553.1 | Chr6|NT_187553.1 | 18 | 25 | Remapped | NT_187553.1 |
| NT_187554.1 | Chr6|NT_187554.1 | 1 | 1 | Remapped | NT_187554.1 |
| NT_187555.1 | Chr6|NT_187555.1 | 3 | 3 | Remapped | NT_187555.1 |
| NT_187556.1 | Chr6|NT_187556.1 | 23 | 36 | Remapped | NT_187556.1 |
| NT_187557.1 | Chr6|NT_187557.1 | 1 | 1 | Remapped | NT_187557.1 |
| NW_004166862.2 | Chr6|NW_004166862.2 | 4 | 4 | Remapped | NW_004166862.2 |
| NW_009646200.1 | Chr6|NW_009646200.1 | 7 | 18 | Remapped | NW_009646200.1 |
| NW_012132918.1 | Chr6|NW_012132918.1 | 15 | 18 | Remapped | NW_012132918.1 |
| NW_018654713.1 | Chr6|NW_018654713.1 | 7 | 17 | Remapped | NW_018654713.1 |
| NT_187558.1 | Chr7|NT_187558.1 | 61 | 133 | Remapped | NT_187558.1 |
| NT_187559.1 | Chr7|NT_187559.1 | 4 | 5 | Remapped | NT_187559.1 |
| NT_187560.1 | Chr7|NT_187560.1 | 6 | 6 | Remapped | NT_187560.1 |
| NT_187561.1 | Chr7|NT_187561.1 | 11 | 11 | Remapped | NT_187561.1 |
| NT_187562.1 | Chr7|NT_187562.1 | 177 | 2,130 | Remapped | NT_187562.1 |
| NT_187563.1 | Chr7|NT_187563.1 | 3 | 3 | Remapped | NT_187563.1 |
| NT_187653.1 | Chr7|NT_187653.1 | 62 | 141 | Remapped | NT_187653.1 |
| NW_017852929.1 | Chr7|NW_017852929.1 | 1 | 2 | Remapped | NW_017852929.1 |
| NW_017852930.1 | Chr7|NW_017852930.1 | 4 | 6 | Remapped | NW_017852930.1 |
| NW_018654714.1 | Chr7|NW_018654714.1 | 24 | 40 | Remapped | NW_018654714.1 |
| NW_018654715.1 | Chr7|NW_018654715.1 | 67 | 470 | Remapped | NW_018654715.1 |
| NW_019805493.1 | Chr7|NW_019805493.1 | 11 | 11 | Remapped | NW_019805493.1 |
| NT_187680.1 | Chr8|NT_187680.1 | 9 | 9 | Remapped | NT_187680.1 |
| NT_187565.1 | Chr8|NT_187565.1 | 20 | 31 | Remapped | NT_187565.1 |
| NT_187566.1 | Chr8|NT_187566.1 | 2 | 4 | Remapped | NT_187566.1 |
| NT_187567.1 | Chr8|NT_187567.1 | 54 | 375 | Remapped | NT_187567.1 |
| NT_187568.1 | Chr8|NT_187568.1 | 11 | 12 | Remapped | NT_187568.1 |
| NT_187569.1 | Chr8|NT_187569.1 | 1 | 1 | Remapped | NT_187569.1 |
| NT_187570.1 | Chr8|NT_187570.1 | 91 | 191 | Remapped | NT_187570.1 |
| NT_187571.1 | Chr8|NT_187571.1 | 87 | 283 | Remapped | NT_187571.1 |
| NT_187572.1 | Chr8|NT_187572.1 | 2 | 2 | Remapped | NT_187572.1 |
| NT_187573.1 | Chr8|NT_187573.1 | 9 | 20 | Remapped | NT_187573.1 |
| NT_187574.1 | Chr8|NT_187574.1 | 10 | 11 | Remapped | NT_187574.1 |
| NT_187576.1 | Chr8|NT_187576.1 | 217 | 618 | Remapped | NT_187576.1 |
| NT_187577.1 | Chr8|NT_187577.1 | 4 | 4 | Remapped | NT_187577.1 |
| NT_187654.1 | Chr8|NT_187654.1 | 14 | 18 | Remapped | NT_187654.1 |
| NT_187655.1 | Chr8|NT_187655.1 | 4 | 4 | Remapped | NT_187655.1 |
| NW_018654716.1 | Chr8|NW_018654716.1 | 8 | 8 | Remapped | NW_018654716.1 |
| NW_018654717.1 | Chr8|NW_018654717.1 | 345 | 725 | Remapped | NW_018654717.1 |
| NT_187578.1 | Chr9|NT_187578.1 | 6 | 6 | Remapped | NT_187578.1 |
| NW_003315928.1 | Chr9|NW_003315928.1 | 2 | 2 | Remapped | NW_003315928.1 |
| NW_003315930.1 | Chr9|NW_003315930.1 | 16 | 67 | Remapped | NW_003315930.1 |
| NW_003315931.1 | Chr9|NW_003315931.1 | 6 | 29 | Remapped | NW_003315931.1 |
| NW_009646201.1 | Chr9|NW_009646201.1 | 24 | 48 | Remapped | NW_009646201.1 |
| NW_013171804.1 | Chr9|NW_013171804.1 | 1 | 1 | Remapped | NW_013171804.1 |
| NW_013171805.1 | Chr9|NW_013171805.1 | 1 | 1 | Remapped | NW_013171805.1 |
| NT_187579.1 | Chr10|NT_187579.1 | 44 | 79 | Remapped | NT_187579.1 |
| NT_187580.1 | Chr10|NT_187580.1 | 6 | 6 | Remapped | NT_187580.1 |
| NW_003315934.1 | Chr10|NW_003315934.1 | 42 | 69 | Remapped | NW_003315934.1 |
| NW_003315935.1 | Chr10|NW_003315935.1 | 1 | 1 | Remapped | NW_003315935.1 |
| NW_009646202.1 | Chr10|NW_009646202.1 | 1 | 1 | Remapped | NW_009646202.1 |
| NW_013171806.1 | Chr10|NW_013171806.1 | 36 | 396 | Remapped | NW_013171806.1 |
| NW_013171807.1 | Chr10|NW_013171807.1 | 6 | 51 | Remapped | NW_013171807.1 |
| NT_187681.1 | Chr11|NT_187681.1 | 38 | 378 | Remapped | NT_187681.1 |
| NT_187656.1 | Chr11|NT_187656.1 | 2 | 3 | Remapped | NT_187656.1 |
| NT_187657.1 | Chr11|NT_187657.1 | 30 | 70 | Remapped | NT_187657.1 |
| NT_187581.1 | Chr11|NT_187581.1 | 62 | 219 | Remapped | NT_187581.1 |
| NT_187582.1 | Chr11|NT_187582.1 | 1 | 1 | Remapped | NT_187582.1 |
| NT_187583.1 | Chr11|NT_187583.1 | 34 | 105 | Remapped | NT_187583.1 |
| NT_187584.1 | Chr11|NT_187584.1 | 52 | 167 | Remapped | NT_187584.1 |
| NT_187585.1 | Chr11|NT_187585.1 | 11 | 11 | Remapped | NT_187585.1 |
| NT_187586.1 | Chr11|NT_187586.1 | 14 | 15 | Remapped | NT_187586.1 |
| NW_003315936.1 | Chr11|NW_003315936.1 | 8 | 12 | Remapped | NW_003315936.1 |
| NW_003871074.1 | Chr11|NW_003871074.1 | 1 | 1 | Remapped | NW_003871074.1 |
| NW_011332695.1 | Chr11|NW_011332695.1 | 35 | 106 | Remapped | NW_011332695.1 |
| NW_015148966.1 | Chr11|NW_015148966.1 | 25 | 216 | Remapped | NW_015148966.1 |
| NW_017363816.1 | Chr11|NW_017363816.1 | 2 | 2 | Remapped | NW_017363816.1 |
| NW_019805495.1 | Chr11|NW_019805495.1 | 31 | 76 | Remapped | NW_019805495.1 |
| NW_019805497.1 | Chr11|NW_019805497.1 | 9 | 9 | Remapped | NW_019805497.1 |
| NT_187658.1 | Chr12|NT_187658.1 | 34 | 207 | Remapped | NT_187658.1 |
| NT_187587.1 | Chr12|NT_187587.1 | 60 | 202 | Remapped | NT_187587.1 |
| NT_187588.1 | Chr12|NT_187588.1 | 2 | 2 | Remapped | NT_187588.1 |
| NT_187589.1 | Chr12|NT_187589.1 | 5 | 5 | Remapped | NT_187589.1 |
| NT_187590.1 | Chr12|NT_187590.1 | 37 | 235 | Remapped | NT_187590.1 |
| NT_187591.1 | Chr12|NT_187591.1 | 2 | 2 | Remapped | NT_187591.1 |
| NW_003315938.1 | Chr12|NW_003315938.1 | 1 | 1 | Remapped | NW_003315938.1 |
| NW_003315939.2 | Chr12|NW_003315939.2 | 1 | 1 | Remapped | NW_003315939.2 |
| NW_003315941.1 | Chr12|NW_003315941.1 | 2 | 3 | Remapped | NW_003315941.1 |
| NW_003571049.1 | Chr12|NW_003571049.1 | 17 | 19 | Remapped | NW_003571049.1 |
| NW_003571050.1 | Chr12|NW_003571050.1 | 21 | 70 | Remapped | NW_003571050.1 |
| NW_009646204.1 | Chr12|NW_009646204.1 | 6 | 6 | Remapped | NW_009646204.1 |
| NW_011332696.1 | Chr12|NW_011332696.1 | 24 | 125 | Remapped | NW_011332696.1 |
| NW_013171809.1 | Chr12|NW_013171809.1 | 2 | 2 | Remapped | NW_013171809.1 |
| NW_015148967.1 | Chr12|NW_015148967.1 | 8 | 8 | Remapped | NW_015148967.1 |
| NW_018654718.1 | Chr12|NW_018654718.1 | 82 | 321 | Remapped | NW_018654718.1 |
| NW_018654719.1 | Chr12|NW_018654719.1 | 1 | 1 | Remapped | NW_018654719.1 |
| NW_018654720.1 | Chr12|NW_018654720.1 | 1 | 1 | Remapped | NW_018654720.1 |
| NT_187592.1 | Chr13|NT_187592.1 | 31 | 57 | Remapped | NT_187592.1 |
| NT_187593.1 | Chr13|NT_187593.1 | 3 | 4 | Remapped | NT_187593.1 |
| NT_187594.1 | Chr13|NT_187594.1 | 31 | 49 | Remapped | NT_187594.1 |
| NT_187595.1 | Chr13|NT_187595.1 | 3 | 3 | Remapped | NT_187595.1 |
| NT_187597.1 | Chr13|NT_187597.1 | 4 | 4 | Remapped | NT_187597.1 |
| NW_011332698.1 | Chr13|NW_011332698.1 | 27 | 40 | Remapped | NW_011332698.1 |
| NW_011332699.1 | Chr13|NW_011332699.1 | 4 | 4 | Remapped | NW_011332699.1 |
| NW_011332700.1 | Chr13|NW_011332700.1 | 5 | 5 | Remapped | NW_011332700.1 |
| NW_013171811.1 | Chr13|NW_013171811.1 | 4 | 175 | Remapped | NW_013171811.1 |
| NT_113796.3 | Chr14|NT_113796.3 | 1 | 1 | Remapped | NT_113796.3 |
| NT_187598.1 | Chr14|NT_187598.1 | 1 | 1 | Remapped | NT_187598.1 |
| NT_187599.1 | Chr14|NT_187599.1 | 5 | 5 | Remapped | NT_187599.1 |
| NT_187600.1 | Chr14|NT_187600.1 | 565 | 1,344 | Remapped | NT_187600.1 |
| NT_187601.1 | Chr14|NT_187601.1 | 97 | 526 | Remapped | NT_187601.1 |
| NW_018654721.1 | Chr14|NW_018654721.1 | 2 | 2 | Remapped | NW_018654721.1 |
| NW_018654722.1 | Chr14|NW_018654722.1 | 14 | 20 | Remapped | NW_018654722.1 |
| NT_187659.1 | Chr15|NT_187659.1 | 7 | 10 | Remapped | NT_187659.1 |
| NT_187660.1 | Chr15|NT_187660.1 | 223 | 565 | Remapped | NT_187660.1 |
| NT_187382.1 | Chr15|NT_187382.1 | 10 | 10 | Remapped | NT_187382.1 |
| NT_187602.1 | Chr15|NT_187602.1 | 28 | 34 | Remapped | NT_187602.1 |
| NT_187603.1 | Chr15|NT_187603.1 | 42 | 194 | Remapped | NT_187603.1 |
| NT_187604.1 | Chr15|NT_187604.1 | 4 | 5 | Remapped | NT_187604.1 |
| NT_187605.1 | Chr15|NT_187605.1 | 2 | 2 | Remapped | NT_187605.1 |
| NT_187606.1 | Chr15|NT_187606.1 | 3 | 3 | Remapped | NT_187606.1 |
| NW_003315943.1 | Chr15|NW_003315943.1 | 2 | 2 | Remapped | NW_003315943.1 |
| NW_003315944.2 | Chr15|NW_003315944.2 | 1 | 1 | Remapped | NW_003315944.2 |
| NW_011332701.1 | Chr15|NW_011332701.1 | 228 | 569 | Remapped | NW_011332701.1 |
| NT_187383.1 | Chr16|NT_187383.1 | 3 | 5 | Remapped | NT_187383.1 |
| NT_187607.1 | Chr16|NT_187607.1 | 91 | 172 | Remapped | NT_187607.1 |
| NT_187608.1 | Chr16|NT_187608.1 | 30 | 40 | Remapped | NT_187608.1 |
| NT_187610.1 | Chr16|NT_187610.1 | 33 | 396 | Remapped | NT_187610.1 |
| NW_003315945.1 | Chr16|NW_003315945.1 | 3 | 3 | Remapped | NW_003315945.1 |
| NW_012132921.1 | Chr16|NW_012132921.1 | 3 | 3 | Remapped | NW_012132921.1 |
| NW_013171813.1 | Chr16|NW_013171813.1 | 1 | 1 | Remapped | NW_013171813.1 |
| NW_017852933.1 | Chr16|NW_017852933.1 | 55 | 173 | Remapped | NW_017852933.1 |
| NW_019805500.1 | Chr16|NW_019805500.1 | 2 | 2 | Remapped | NW_019805500.1 |
| NT_187661.1 | Chr17|NT_187661.1 | 141 | 282 | Remapped | NT_187661.1 |
| NT_187662.1 | Chr17|NT_187662.1 | 109 | 590 | Remapped | NT_187662.1 |
| NT_187663.1 | Chr17|NT_187663.1 | 173 | 421 | Remapped | NT_187663.1 |
| NT_187664.1 | Chr17|NT_187664.1 | 33 | 98 | Remapped | NT_187664.1 |
| NW_003871093.1 | Chr17|NW_003871093.1 | 8 | 1,251 | Remapped | NW_003871093.1 |
| NT_167251.2 | Chr17|NT_167251.2 | 75 | 181 | Remapped | NT_167251.2 |
| NT_187384.1 | Chr17|NT_187384.1 | 6 | 7 | Remapped | NT_187384.1 |
| NT_187611.1 | Chr17|NT_187611.1 | 5 | 5 | Remapped | NT_187611.1 |
| NT_187612.1 | Chr17|NT_187612.1 | 13 | 15 | Remapped | NT_187612.1 |
| NT_187613.1 | Chr17|NT_187613.1 | 68 | 156 | Remapped | NT_187613.1 |
| NT_187614.1 | Chr17|NT_187614.1 | 140 | 553 | Remapped | NT_187614.1 |
| NT_187615.1 | Chr17|NT_187615.1 | 1 | 1 | Remapped | NT_187615.1 |
| NW_003315952.3 | Chr17|NW_003315952.3 | 175 | 832 | Remapped | NW_003315952.3 |
| NW_003315953.2 | Chr17|NW_003315953.2 | 1 | 3 | Remapped | NW_003315953.2 |
| NW_003315954.1 | Chr17|NW_003315954.1 | 3 | 3 | Remapped | NW_003315954.1 |
| NW_003315955.1 | Chr17|NW_003315955.1 | 17 | 24 | Remapped | NW_003315955.1 |
| NW_003871092.1 | Chr17|NW_003871092.1 | 3 | 4 | Remapped | NW_003871092.1 |
| NW_016107299.1 | Chr17|NW_016107299.1 | 1 | 1 | Remapped | NW_016107299.1 |
| NW_017363817.1 | Chr17|NW_017363817.1 | 39 | 123 | Remapped | NW_017363817.1 |
| NW_017363818.1 | Chr17|NW_017363818.1 | 4 | 4 | Remapped | NW_017363818.1 |
| NW_017363819.1 | Chr17|NW_017363819.1 | 24 | 33 | Remapped | NW_017363819.1 |
| NT_187665.1 | Chr18|NT_187665.1 | 10 | 18 | Remapped | NT_187665.1 |
| NT_187666.1 | Chr18|NT_187666.1 | 55 | 168 | Remapped | NT_187666.1 |
| NT_187617.1 | Chr18|NT_187617.1 | 18 | 30 | Remapped | NT_187617.1 |
| NW_003315956.1 | Chr18|NW_003315956.1 | 2 | 2 | Remapped | NW_003315956.1 |
| NW_003315957.1 | Chr18|NW_003315957.1 | 3 | 3 | Remapped | NW_003315957.1 |
| NW_003315958.1 | Chr18|NW_003315958.1 | 8 | 15 | Remapped | NW_003315958.1 |
| NW_003315959.1 | Chr18|NW_003315959.1 | 35 | 203 | Remapped | NW_003315959.1 |
| NW_003315960.1 | Chr18|NW_003315960.1 | 3 | 3 | Remapped | NW_003315960.1 |
| NW_003315961.1 | Chr18|NW_003315961.1 | 55 | 168 | Remapped | NW_003315961.1 |
| NW_013171814.1 | Chr18|NW_013171814.1 | 8 | 8 | Remapped | NW_013171814.1 |
| NW_019805502.1 | Chr18|NW_019805502.1 | 1 | 1 | Remapped | NW_019805502.1 |
| NW_019805503.1 | Chr18|NW_019805503.1 | 32 | 72 | Remapped | NW_019805503.1 |
| NT_187693.1 | Chr19|NT_187693.1 | 239 | 658 | Remapped | NT_187693.1 |
| NW_003571061.2 | Chr19|NW_003571061.2 | 76 | 267 | Remapped | NW_003571061.2 |
| NW_003571057.2 | Chr19|NW_003571057.2 | 46 | 218 | Remapped | NW_003571057.2 |
| NW_003571058.2 | Chr19|NW_003571058.2 | 46 | 218 | Remapped | NW_003571058.2 |
| NW_003571059.2 | Chr19|NW_003571059.2 | 46 | 218 | Remapped | NW_003571059.2 |
| NW_003571060.1 | Chr19|NW_003571060.1 | 128 | 452 | Remapped | NW_003571060.1 |
| NW_003571056.2 | Chr19|NW_003571056.2 | 46 | 218 | Remapped | NW_003571056.2 |
| NW_003571055.2 | Chr19|NW_003571055.2 | 61 | 242 | Remapped | NW_003571055.2 |
| NT_187620.1 | Chr19|NT_187620.1 | 14 | 40 | Remapped | NT_187620.1 |
| NT_187621.1 | Chr19|NT_187621.1 | 41 | 154 | Remapped | NT_187621.1 |
| NT_187622.1 | Chr19|NT_187622.1 | 8 | 9 | Remapped | NT_187622.1 |
| NW_003315962.1 | Chr19|NW_003315962.1 | 32 | 51 | Remapped | NW_003315962.1 |
| NW_003315963.1 | Chr19|NW_003315963.1 | 7 | 19 | Remapped | NW_003315963.1 |
| NW_003315964.2 | Chr19|NW_003315964.2 | 3 | 3 | Remapped | NW_003315964.2 |
| NW_003315965.1 | Chr19|NW_003315965.1 | 4 | 4 | Remapped | NW_003315965.1 |
| NW_003571054.1 | Chr19|NW_003571054.1 | 144 | 477 | Remapped | NW_003571054.1 |
| NW_009646206.1 | Chr19|NW_009646206.1 | 14 | 129 | Remapped | NW_009646206.1 |
| NT_187623.1 | Chr20|NT_187623.1 | 3 | 3 | Remapped | NT_187623.1 |
| NT_187624.1 | Chr20|NT_187624.1 | 55 | 185 | Remapped | NT_187624.1 |
| NW_003315966.2 | Chr20|NW_003315966.2 | 1 | 1 | Remapped | NW_003315966.2 |
| NT_187626.1 | Chr21|NT_187626.1 | 13 | 21 | Remapped | NT_187626.1 |
| NT_187628.1 | Chr21|NT_187628.1 | 1 | 1 | Remapped | NT_187628.1 |
| NW_003315967.2 | Chr21|NW_003315967.2 | 1 | 1 | Remapped | NW_003315967.2 |
| NW_003315968.2 | Chr21|NW_003315968.2 | 30 | 254 | Remapped | NW_003315968.2 |
| NW_003315970.2 | Chr21|NW_003315970.2 | 3 | 3 | Remapped | NW_003315970.2 |
| NW_015148969.1 | Chr22|NW_015148969.1 | 33 | 54 | Remapped | NW_015148969.1 |
| NT_187393.1 | Chr22|NT_187393.1 | 1 | 1 | Remapped | NT_187393.1 |
| NT_187629.1 | Chr22|NT_187629.1 | 83 | 250 | Remapped | NT_187629.1 |
| NT_187631.1 | Chr22|NT_187631.1 | 1 | 1 | Remapped | NT_187631.1 |
| NT_187632.1 | Chr22|NT_187632.1 | 6 | 6 | Remapped | NT_187632.1 |
| NT_187633.1 | Chr22|NT_187633.1 | 99 | 1,515 | Remapped | NT_187633.1 |
| NW_003315972.2 | Chr22|NW_003315972.2 | 10 | 309 | Remapped | NW_003315972.2 |
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.10 | Chr1 | 5,691 | 34,614 | Remapped | NC_000001.10 |
| NC_000002.11 | Chr2 | 5,525 | 35,214 | Remapped | NC_000002.11 |
| NC_000003.11 | Chr3 | 4,603 | 31,442 | Remapped | NC_000003.11 |
| NC_000004.11 | Chr4 | 4,015 | 35,125 | Remapped | NC_000004.11 |
| NC_000005.9 | Chr5 | 4,624 | 27,617 | Remapped | NC_000005.9 |
| NC_000006.11 | Chr6 | 5,405 | 32,226 | Remapped | NC_000006.11 |
| NC_000007.13 | Chr7 | 4,489 | 25,879 | Remapped | NC_000007.13 |
| NC_000008.10 | Chr8 | 4,080 | 25,086 | Remapped | NC_000008.10 |
| NC_000009.11 | Chr9 | 3,614 | 23,810 | Remapped | NC_000009.11 |
| NC_000010.10 | Chr10 | 3,496 | 24,383 | Remapped | NC_000010.10 |
| NC_000011.9 | Chr11 | 4,519 | 24,545 | Remapped | NC_000011.9 |
| NC_000012.11 | Chr12 | 4,677 | 21,203 | Remapped | NC_000012.11 |
| NC_000013.10 | Chr13 | 2,667 | 15,783 | Remapped | NC_000013.10 |
| NC_000014.8 | Chr14 | 3,861 | 16,400 | Remapped | NC_000014.8 |
| NC_000015.9 | Chr15 | 4,089 | 15,507 | Remapped | NC_000015.9 |
| NC_000016.9 | Chr16 | 3,446 | 14,032 | Remapped | NC_000016.9 |
| NC_000017.10 | Chr17 | 2,555 | 13,288 | Remapped | NC_000017.10 |
| NC_000018.9 | Chr18 | 2,046 | 13,593 | Remapped | NC_000018.9 |
| NC_000019.9 | Chr19 | 2,577 | 12,163 | Remapped | NC_000019.9 |
| NC_000020.10 | Chr20 | 1,945 | 10,039 | Remapped | NC_000020.10 |
| NC_000021.8 | Chr21 | 1,281 | 5,014 | Remapped | NC_000021.8 |
| NC_000022.10 | Chr22 | 1,596 | 9,753 | Remapped | NC_000022.10 |
| NW_003315903.1 | Chr1|NW_003315903.1 | 4 | 4 | Remapped | NW_003315903.1 |
| NW_003315904.1 | Chr1|NW_003315904.1 | 1 | 1 | Remapped | NW_003315904.1 |
| NW_003315905.1 | Chr1|NW_003315905.1 | 6 | 6 | Remapped | NW_003315905.1 |
| NW_003315907.1 | Chr1|NW_003315907.1 | 9 | 14 | Remapped | NW_003315907.1 |
| NW_003871055.3 | Chr1|NW_003871055.3 | 208 | 466 | Remapped | NW_003871055.3 |
| NW_003871056.3 | Chr1|NW_003871056.3 | 16 | 33 | Remapped | NW_003871056.3 |
| NW_003871057.1 | Chr1|NW_003871057.1 | 25 | 40 | Remapped | NW_003871057.1 |
| NW_003315908.1 | Chr2|NW_003315908.1 | 3 | 3 | Remapped | NW_003315908.1 |
| NW_003315909.1 | Chr2|NW_003315909.1 | 2 | 2 | Remapped | NW_003315909.1 |
| NW_004504299.1 | Chr2|NW_004504299.1 | 15 | 105 | Remapped | NW_004504299.1 |
| NW_003315910.1 | Chr3|NW_003315910.1 | 1 | 1 | Remapped | NW_003315910.1 |
| NW_003871058.1 | Chr3|NW_003871058.1 | 5 | 6 | Remapped | NW_003871058.1 |
| NW_003871059.1 | Chr3|NW_003871059.1 | 5 | 5 | Remapped | NW_003871059.1 |
| NT_167250.1 | Chr4|NT_167250.1 | 4 | 4 | Remapped | NT_167250.1 |
| NW_003315915.1 | Chr4|NW_003315915.1 | 22 | 373 | Remapped | NW_003315915.1 |
| NW_003571034.1 | Chr4|NW_003571034.1 | 3 | 3 | Remapped | NW_003571034.1 |
| NW_003571035.1 | Chr4|NW_003571035.1 | 1 | 1 | Remapped | NW_003571035.1 |
| NW_004775427.1 | Chr4|NW_004775427.1 | 57 | 132 | Remapped | NW_004775427.1 |
| NW_003315917.2 | Chr5|NW_003315917.2 | 3 | 3 | Remapped | NW_003315917.2 |
| NW_003315920.1 | Chr5|NW_003315920.1 | 6 | 7 | Remapped | NW_003315920.1 |
| NW_003571036.1 | Chr5|NW_003571036.1 | 3 | 4 | Remapped | NW_003571036.1 |
| NW_004775428.1 | Chr5|NW_004775428.1 | 94 | 330 | Remapped | NW_004775428.1 |
| NT_113891.2 | Chr6|NT_113891.2 | 1 | 1 | Remapped | NT_113891.2 |
| NT_167244.1 | Chr6|NT_167244.1 | 45 | 65 | Remapped | NT_167244.1 |
| NT_167245.1 | Chr6|NT_167245.1 | 291 | 917 | Remapped | NT_167245.1 |
| NT_167246.1 | Chr6|NT_167246.1 | 856 | 3,198 | Remapped | NT_167246.1 |
| NT_167247.1 | Chr6|NT_167247.1 | 313 | 750 | Remapped | NT_167247.1 |
| NT_167249.1 | Chr6|NT_167249.1 | 789 | 2,307 | Remapped | NT_167249.1 |
| NW_004070866.1 | Chr6|NW_004070866.1 | 17 | 95 | Remapped | NW_004070866.1 |
| NW_004166862.1 | Chr6|NW_004166862.1 | 3 | 3 | Remapped | NW_004166862.1 |
| NW_004504300.1 | Chr6|NW_004504300.1 | 14 | 17 | Remapped | NW_004504300.1 |
| NW_003571037.1 | Chr7|NW_003571037.1 | 13 | 91 | Remapped | NW_003571037.1 |
| NW_003571038.1 | Chr7|NW_003571038.1 | 31 | 59 | Remapped | NW_003571038.1 |
| NW_003571039.1 | Chr7|NW_003571039.1 | 1 | 1 | Remapped | NW_003571039.1 |
| NW_003571040.1 | Chr7|NW_003571040.1 | 178 | 2,135 | Remapped | NW_003571040.1 |
| NW_003571041.1 | Chr7|NW_003571041.1 | 1 | 1 | Remapped | NW_003571041.1 |
| NW_003871064.1 | Chr7|NW_003871064.1 | 117 | 1,144 | Remapped | NW_003871064.1 |
| NW_003871065.1 | Chr7|NW_003871065.1 | 6 | 17 | Remapped | NW_003871065.1 |
| NW_004775430.1 | Chr7|NW_004775430.1 | 4 | 10 | Remapped | NW_004775430.1 |
| NW_003315923.1 | Chr8|NW_003315923.1 | 24 | 40 | Remapped | NW_003315923.1 |
| NW_003315924.1 | Chr8|NW_003315924.1 | 17 | 24 | Remapped | NW_003315924.1 |
| NW_003571042.1 | Chr8|NW_003571042.1 | 166 | 508 | Remapped | NW_003571042.1 |
| NW_003871066.2 | Chr8|NW_003871066.2 | 1 | 1 | Remapped | NW_003871066.2 |
| NW_004775431.1 | Chr8|NW_004775431.1 | 1 | 1 | Remapped | NW_004775431.1 |
| NW_003315925.1 | Chr9|NW_003315925.1 | 24 | 48 | Remapped | NW_003315925.1 |
| NW_003315928.1 | Chr9|NW_003315928.1 | 2 | 2 | Remapped | NW_003315928.1 |
| NW_003315930.1 | Chr9|NW_003315930.1 | 16 | 67 | Remapped | NW_003315930.1 |
| NW_003315931.1 | Chr9|NW_003315931.1 | 6 | 29 | Remapped | NW_003315931.1 |
| NW_003871067.1 | Chr9|NW_003871067.1 | 1 | 4 | Remapped | NW_003871067.1 |
| NW_004070868.1 | Chr9|NW_004070868.1 | 21 | 32 | Remapped | NW_004070868.1 |
| NW_004070869.1 | Chr9|NW_004070869.1 | 24 | 78 | Remapped | NW_004070869.1 |
| NW_004504301.1 | Chr9|NW_004504301.1 | 1 | 1 | Remapped | NW_004504301.1 |
| NW_003315933.1 | Chr10|NW_003315933.1 | 1 | 1 | Remapped | NW_003315933.1 |
| NW_003315934.1 | Chr10|NW_003315934.1 | 41 | 68 | Remapped | NW_003315934.1 |
| NW_003315935.1 | Chr10|NW_003315935.1 | 1 | 1 | Remapped | NW_003315935.1 |
| NW_003571043.1 | Chr10|NW_003571043.1 | 4 | 8 | Remapped | NW_003571043.1 |
| NW_003871068.1 | Chr10|NW_003871068.1 | 102 | 577 | Remapped | NW_003871068.1 |
| NW_003871071.1 | Chr10|NW_003871071.1 | 17 | 30 | Remapped | NW_003871071.1 |
| NW_004775432.1 | Chr10|NW_004775432.1 | 8 | 9 | Remapped | NW_004775432.1 |
| NW_003315936.1 | Chr11|NW_003315936.1 | 8 | 12 | Remapped | NW_003315936.1 |
| NW_003571045.1 | Chr11|NW_003571045.1 | 4 | 4 | Remapped | NW_003571045.1 |
| NW_003571046.1 | Chr11|NW_003571046.1 | 1 | 1 | Remapped | NW_003571046.1 |
| NW_003871072.2 | Chr11|NW_003871072.2 | 1 | 1 | Remapped | NW_003871072.2 |
| NW_003871074.1 | Chr11|NW_003871074.1 | 1 | 1 | Remapped | NW_003871074.1 |
| NW_003871075.1 | Chr11|NW_003871075.1 | 5 | 12 | Remapped | NW_003871075.1 |
| NW_003871077.1 | Chr11|NW_003871077.1 | 13 | 71 | Remapped | NW_003871077.1 |
| NW_003871078.1 | Chr11|NW_003871078.1 | 2 | 2 | Remapped | NW_003871078.1 |
| NW_003871081.1 | Chr11|NW_003871081.1 | 3 | 3 | Remapped | NW_003871081.1 |
| NW_003871082.1 | Chr11|NW_003871082.1 | 1 | 1 | Remapped | NW_003871082.1 |
| NW_004070871.1 | Chr11|NW_004070871.1 | 5 | 6 | Remapped | NW_004070871.1 |
| NW_003315937.1 | Chr12|NW_003315937.1 | 41 | 110 | Remapped | NW_003315937.1 |
| NW_003315938.1 | Chr12|NW_003315938.1 | 1 | 1 | Remapped | NW_003315938.1 |
| NW_003315939.1 | Chr12|NW_003315939.1 | 1 | 1 | Remapped | NW_003315939.1 |
| NW_003315941.1 | Chr12|NW_003315941.1 | 2 | 3 | Remapped | NW_003315941.1 |
| NW_003571048.1 | Chr12|NW_003571048.1 | 17 | 19 | Remapped | NW_003571048.1 |
| NW_003571050.1 | Chr12|NW_003571050.1 | 29 | 216 | Remapped | NW_003571050.1 |
| NW_003871083.2 | Chr12|NW_003871083.2 | 8 | 9 | Remapped | NW_003871083.2 |
| NW_004504303.2 | Chr12|NW_004504303.2 | 3 | 3 | Remapped | NW_004504303.2 |
| NW_004166863.1 | Chr14|NW_004166863.1 | 763 | 1,678 | Remapped | NW_004166863.1 |
| NW_003315943.1 | Chr15|NW_003315943.1 | 7 | 10 | Remapped | NW_003315943.1 |
| NW_003315944.1 | Chr15|NW_003315944.1 | 1 | 1 | Remapped | NW_003315944.1 |
| NW_003871084.1 | Chr15|NW_003871084.1 | 18 | 1,006 | Remapped | NW_003871084.1 |
| NW_003315945.1 | Chr16|NW_003315945.1 | 4 | 4 | Remapped | NW_003315945.1 |
| NT_167251.1 | Chr17|NT_167251.1 | 49 | 153 | Remapped | NT_167251.1 |
| NW_003315948.2 | Chr17|NW_003315948.2 | 7 | 8 | Remapped | NW_003315948.2 |
| NW_003315949.1 | Chr17|NW_003315949.1 | 69 | 159 | Remapped | NW_003315949.1 |
| NW_003315950.2 | Chr17|NW_003315950.2 | 19 | 47 | Remapped | NW_003315950.2 |
| NW_003315953.1 | Chr17|NW_003315953.1 | 1 | 3 | Remapped | NW_003315953.1 |
| NW_003315954.1 | Chr17|NW_003315954.1 | 3 | 3 | Remapped | NW_003315954.1 |
| NW_003315955.1 | Chr17|NW_003315955.1 | 17 | 24 | Remapped | NW_003315955.1 |
| NW_003571052.1 | Chr17|NW_003571052.1 | 1 | 1 | Remapped | NW_003571052.1 |
| NW_003871086.1 | Chr17|NW_003871086.1 | 91 | 222 | Remapped | NW_003871086.1 |
| NW_003871087.1 | Chr17|NW_003871087.1 | 9 | 9 | Remapped | NW_003871087.1 |
| NW_003871088.1 | Chr17|NW_003871088.1 | 11 | 13 | Remapped | NW_003871088.1 |
| NW_003871090.1 | Chr17|NW_003871090.1 | 10 | 512 | Remapped | NW_003871090.1 |
| NW_003871092.1 | Chr17|NW_003871092.1 | 1 | 1 | Remapped | NW_003871092.1 |
| NW_003871093.1 | Chr17|NW_003871093.1 | 6 | 1,248 | Remapped | NW_003871093.1 |
| NW_004070872.2 | Chr17|NW_004070872.2 | 204 | 926 | Remapped | NW_004070872.2 |
| NW_004775433.1 | Chr17|NW_004775433.1 | 4 | 4 | Remapped | NW_004775433.1 |
| NW_003315956.1 | Chr18|NW_003315956.1 | 2 | 2 | Remapped | NW_003315956.1 |
| NW_003315957.1 | Chr18|NW_003315957.1 | 3 | 3 | Remapped | NW_003315957.1 |
| NW_003315958.1 | Chr18|NW_003315958.1 | 8 | 15 | Remapped | NW_003315958.1 |
| NW_003315959.1 | Chr18|NW_003315959.1 | 35 | 203 | Remapped | NW_003315959.1 |
| NW_003315960.1 | Chr18|NW_003315960.1 | 3 | 3 | Remapped | NW_003315960.1 |
| NW_003315961.1 | Chr18|NW_003315961.1 | 36 | 89 | Remapped | NW_003315961.1 |
| NW_003315962.1 | Chr19|NW_003315962.1 | 32 | 51 | Remapped | NW_003315962.1 |
| NW_003315963.1 | Chr19|NW_003315963.1 | 7 | 19 | Remapped | NW_003315963.1 |
| NW_003315964.2 | Chr19|NW_003315964.2 | 3 | 3 | Remapped | NW_003315964.2 |
| NW_003315965.1 | Chr19|NW_003315965.1 | 4 | 4 | Remapped | NW_003315965.1 |
| NW_003571053.2 | Chr19|NW_003571053.2 | 125 | 500 | Remapped | NW_003571053.2 |
| NW_003571054.1 | Chr19|NW_003571054.1 | 1 | 1 | Remapped | NW_003571054.1 |
| NW_003571055.1 | Chr19|NW_003571055.1 | 1 | 1 | Remapped | NW_003571055.1 |
| NW_003571056.1 | Chr19|NW_003571056.1 | 1 | 1 | Remapped | NW_003571056.1 |
| NW_003571057.1 | Chr19|NW_003571057.1 | 1 | 1 | Remapped | NW_003571057.1 |
| NW_003571058.1 | Chr19|NW_003571058.1 | 1 | 1 | Remapped | NW_003571058.1 |
| NW_003571059.1 | Chr19|NW_003571059.1 | 1 | 1 | Remapped | NW_003571059.1 |
| NW_003571061.1 | Chr19|NW_003571061.1 | 2 | 2 | Remapped | NW_003571061.1 |
| NW_003871094.1 | Chr19|NW_003871094.1 | 13 | 26 | Remapped | NW_003871094.1 |
| NW_004166865.1 | Chr19|NW_004166865.1 | 139 | 397 | Remapped | NW_004166865.1 |
| NW_004775434.1 | Chr19|NW_004775434.1 | 26 | 75 | Remapped | NW_004775434.1 |
| NW_003315966.1 | Chr20|NW_003315966.1 | 1 | 1 | Remapped | NW_003315966.1 |
| NW_003571063.2 | Chr20|NW_003571063.2 | 5 | 7 | Remapped | NW_003571063.2 |
| NW_004504304.1 | Chr20|NW_004504304.1 | 2 | 2 | Remapped | NW_004504304.1 |
| NW_003315967.1 | Chr21|NW_003315967.1 | 1 | 1 | Remapped | NW_003315967.1 |
| NW_003315968.1 | Chr21|NW_003315968.1 | 30 | 254 | Remapped | NW_003315968.1 |
| NW_003315970.1 | Chr21|NW_003315970.1 | 3 | 3 | Remapped | NW_003315970.1 |
| NW_004775435.1 | Chr21|NW_004775435.1 | 14 | 14 | Remapped | NW_004775435.1 |
| NW_003315972.1 | Chr22|NW_003315972.1 | 10 | 309 | Remapped | NW_003315972.1 |
| NW_003871096.1 | Chr22|NW_003871096.1 | 3 | 3 | Remapped | NW_003871096.1 |
| NW_004070874.1 | Chr22|NW_004070874.1 | 1 | 1 | Remapped | NW_004070874.1 |
| NW_004070875.1 | Chr22|NW_004070875.1 | 43 | 58 | Remapped | NW_004070875.1 |
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.9 | Chr1 | 5,691 | 34,614 | Submitted | NC_000001.9 |
| NC_000002.10 | Chr2 | 5,525 | 35,214 | Submitted | NC_000002.10 |
| NC_000003.10 | Chr3 | 4,603 | 31,442 | Submitted | NC_000003.10 |
| NC_000004.10 | Chr4 | 4,035 | 35,200 | Submitted | NC_000004.10 |
| NC_000005.8 | Chr5 | 4,624 | 27,617 | Submitted | NC_000005.8 |
| NC_000006.10 | Chr6 | 5,405 | 32,226 | Submitted | NC_000006.10 |
| NC_000007.12 | Chr7 | 4,545 | 26,517 | Submitted | NC_000007.12 |
| NC_000008.9 | Chr8 | 4,087 | 25,106 | Submitted | NC_000008.9 |
| NC_000009.10 | Chr9 | 3,615 | 23,811 | Submitted | NC_000009.10 |
| NC_000010.9 | Chr10 | 3,496 | 24,383 | Submitted | NC_000010.9 |
| NC_000011.8 | Chr11 | 4,521 | 24,547 | Submitted | NC_000011.8 |
| NC_000012.10 | Chr12 | 4,694 | 21,222 | Submitted | NC_000012.10 |
| NC_000013.9 | Chr13 | 2,667 | 15,783 | Submitted | NC_000013.9 |
| NC_000014.7 | Chr14 | 3,861 | 16,400 | Submitted | NC_000014.7 |
| NC_000015.8 | Chr15 | 4,143 | 15,570 | Submitted | NC_000015.8 |
| NC_000016.8 | Chr16 | 3,445 | 14,031 | Submitted | NC_000016.8 |
| NC_000017.9 | Chr17 | 2,802 | 14,265 | Submitted | NC_000017.9 |
| NC_000018.8 | Chr18 | 2,046 | 13,593 | Submitted | NC_000018.8 |
| NC_000019.8 | Chr19 | 2,717 | 12,561 | Submitted | NC_000019.8 |
| NC_000020.9 | Chr20 | 1,946 | 10,040 | Submitted | NC_000020.9 |
| NC_000021.7 | Chr21 | 1,281 | 5,014 | Submitted | NC_000021.7 |
| NC_000022.9 | Chr22 | 1,596 | 9,753 | Submitted | NC_000022.9 |
| Variant Region remap status | Variant Call remap status | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
| NC_000001.9 | Chr1 | 5,691 | 5,329 | 72 | 38 | 0 | 252 | 34,614 | 33,922 | 75 | 72 | 0 | 545 |
| NC_000002.10 | Chr2 | 5,525 | 5,405 | 79 | 19 | 0 | 22 | 35,214 | 34,993 | 85 | 23 | 0 | 113 |
| NC_000003.10 | Chr3 | 4,603 | 4,529 | 51 | 10 | 0 | 13 | 31,442 | 31,344 | 74 | 10 | 0 | 14 |
| NC_000004.10 | Chr4 | 4,035 | 3,843 | 99 | 12 | 7 | 74 | 35,200 | 34,608 | 119 | 13 | 11 | 449 |
| NC_000005.8 | Chr5 | 4,624 | 4,464 | 33 | 21 | 0 | 106 | 27,617 | 27,193 | 37 | 43 | 0 | 344 |
| NC_000006.10 | Chr6 | 5,405 | 4,032 | 55 | 7 | 0 | 1,311 | 32,226 | 27,676 | 61 | 7 | 0 | 4,482 |
| NC_000007.12 | Chr7 | 4,545 | 4,029 | 178 | 31 | 0 | 307 | 26,517 | 22,821 | 817 | 46 | 0 | 2,833 |
| NC_000008.9 | Chr8 | 4,087 | 3,774 | 79 | 32 | 0 | 202 | 25,106 | 24,427 | 91 | 34 | 0 | 554 |
| NC_000009.10 | Chr9 | 3,615 | 3,428 | 85 | 6 | 1 | 95 | 23,811 | 23,444 | 97 | 8 | 1 | 261 |
| NC_000010.9 | Chr10 | 3,496 | 3,189 | 67 | 33 | 0 | 207 | 24,383 | 23,502 | 94 | 49 | 0 | 738 |
| NC_000011.8 | Chr11 | 4,521 | 4,446 | 17 | 16 | 0 | 42 | 24,547 | 24,398 | 19 | 18 | 0 | 112 |
| NC_000012.10 | Chr12 | 4,694 | 4,545 | 38 | 26 | 0 | 85 | 21,222 | 20,813 | 38 | 28 | 0 | 343 |
| NC_000013.9 | Chr13 | 2,667 | 2,639 | 24 | 4 | 0 | 0 | 15,783 | 15,753 | 26 | 4 | 0 | 0 |
| NC_000014.7 | Chr14 | 3,861 | 3,052 | 41 | 5 | 0 | 763 | 16,400 | 14,656 | 61 | 5 | 0 | 1,678 |
| NC_000015.8 | Chr15 | 4,143 | 3,749 | 129 | 181 | 54 | 30 | 15,570 | 13,947 | 317 | 222 | 63 | 1,021 |
| NC_000016.8 | Chr16 | 3,445 | 3,405 | 31 | 4 | 0 | 5 | 14,031 | 13,978 | 34 | 14 | 0 | 5 |
| NC_000017.9 | Chr17 | 2,802 | 2,134 | 302 | 114 | 4 | 248 | 14,265 | 11,067 | 665 | 180 | 4 | 2,349 |
| NC_000018.8 | Chr18 | 2,046 | 1,907 | 50 | 2 | 0 | 87 | 13,593 | 13,218 | 58 | 2 | 0 | 315 |
| NC_000019.8 | Chr19 | 2,717 | 2,429 | 68 | 9 | 0 | 211 | 12,561 | 11,769 | 99 | 14 | 0 | 679 |
| NC_000020.9 | Chr20 | 1,946 | 1,897 | 33 | 7 | 1 | 8 | 10,040 | 9,965 | 57 | 7 | 1 | 10 |
| NC_000021.7 | Chr21 | 1,281 | 1,199 | 28 | 6 | 0 | 48 | 5,014 | 4,692 | 44 | 6 | 0 | 272 |
| NC_000022.9 | Chr22 | 1,596 | 1,474 | 80 | 18 | 0 | 24 | 9,753 | 9,196 | 205 | 25 | 0 | 327 |
| Variant Region remap status | Variant Call remap status | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
| NC_000001.9 | Chr1 | 5,691 | 4,839 | 446 | 68 | 5 | 333 | 34,614 | 30,895 | 855 | 134 | 14 | 2,716 |
| NC_000002.10 | Chr2 | 5,525 | 4,675 | 260 | 36 | 0 | 554 | 35,214 | 33,172 | 458 | 56 | 0 | 1,528 |
| NC_000003.10 | Chr3 | 4,603 | 4,317 | 121 | 16 | 2 | 147 | 31,442 | 30,783 | 168 | 29 | 3 | 459 |
| NC_000004.10 | Chr4 | 4,035 | 3,733 | 188 | 18 | 7 | 89 | 35,200 | 34,387 | 323 | 21 | 11 | 458 |
| NC_000005.8 | Chr5 | 4,624 | 4,138 | 80 | 21 | 0 | 385 | 27,617 | 26,321 | 95 | 43 | 0 | 1,158 |
| NC_000006.10 | Chr6 | 5,405 | 3,899 | 113 | 37 | 5 | 1,351 | 32,226 | 27,607 | 122 | 64 | 5 | 4,428 |
| NC_000007.12 | Chr7 | 4,545 | 3,822 | 304 | 31 | 58 | 330 | 26,517 | 22,759 | 1,064 | 131 | 478 | 2,085 |
| NC_000008.9 | Chr8 | 4,087 | 3,113 | 130 | 70 | 15 | 759 | 25,106 | 22,601 | 141 | 113 | 257 | 1,994 |
| NC_000009.10 | Chr9 | 3,615 | 3,364 | 154 | 20 | 15 | 62 | 23,811 | 23,321 | 257 | 47 | 26 | 160 |
| NC_000010.9 | Chr10 | 3,496 | 3,137 | 150 | 51 | 22 | 136 | 24,383 | 23,362 | 200 | 168 | 50 | 603 |
| NC_000011.8 | Chr11 | 4,521 | 4,115 | 125 | 20 | 9 | 252 | 24,547 | 23,427 | 229 | 37 | 18 | 836 |
| NC_000012.10 | Chr12 | 4,694 | 4,340 | 41 | 7 | 8 | 298 | 21,222 | 19,967 | 41 | 7 | 10 | 1,197 |
| NC_000013.9 | Chr13 | 2,667 | 2,494 | 37 | 26 | 2 | 108 | 15,783 | 15,374 | 39 | 31 | 2 | 337 |
| NC_000014.7 | Chr14 | 3,861 | 2,670 | 432 | 59 | 17 | 683 | 16,400 | 12,467 | 740 | 97 | 1,199 | 1,897 |
| NC_000015.8 | Chr15 | 4,143 | 3,470 | 149 | 225 | 5 | 294 | 15,570 | 14,214 | 275 | 283 | 8 | 790 |
| NC_000016.8 | Chr16 | 3,445 | 3,147 | 59 | 20 | 0 | 219 | 14,031 | 13,082 | 92 | 64 | 0 | 793 |
| NC_000017.9 | Chr17 | 2,802 | 1,791 | 314 | 66 | 2 | 629 | 14,265 | 10,415 | 653 | 106 | 2 | 3,089 |
| NC_000018.8 | Chr18 | 2,046 | 1,790 | 73 | 14 | 2 | 167 | 13,593 | 12,947 | 76 | 60 | 2 | 508 |
| NC_000019.8 | Chr19 | 2,717 | 2,335 | 103 | 14 | 0 | 265 | 12,561 | 11,481 | 170 | 27 | 0 | 883 |
| NC_000020.9 | Chr20 | 1,946 | 1,778 | 103 | 3 | 3 | 59 | 10,040 | 9,696 | 149 | 3 | 3 | 189 |
| NC_000021.7 | Chr21 | 1,281 | 1,095 | 128 | 6 | 0 | 52 | 5,014 | 4,570 | 154 | 6 | 0 | 284 |
| NC_000022.9 | Chr22 | 1,596 | 977 | 368 | 41 | 13 | 197 | 9,753 | 5,897 | 542 | 182 | 1,653 | 1,479 |
Samplesets
Number of Samplesets: 12
- Sampleset ID:
- 1
- Sampleset Type:
- Case
- Description:
- Children referred to Signature Genomics with a general diagnosis of intellectual disability (ID) and/or developmental delay (DD).
- Size:
- 15,767
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- Developmental Disabilities
- Sampleset ID:
- 2
- Name:
- HGDP
- Sampleset Type:
- Control
- Description:
- The HGDP consists of 1064 individuals sampled from 51 different world populations. N=984 after sample quality control. Illumina 650Y data from PMID:18292342
- Size:
- 986
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- None reported
| Sample ID | Subject ID | Sex | Ethnicity | Subject Phenotype |
|---|---|---|---|---|
| HGDP00080 | HGDP00080 | Male | Balochi | Not reported |
| HGDP00074 | HGDP00074 | Male | Balochi | Not reported |
| HGDP00108 | HGDP00108 | Male | Hazara | Not reported |
| HGDP00169 | HGDP00169 | Male | Sindhi | Not reported |
| HGDP00144 | HGDP00144 | Male | Makrani | Not reported |
| HGDP00064 | HGDP00064 | Male | Balochi | Not reported |
| HGDP00146 | HGDP00146 | Male | Makrani | Not reported |
| HGDP00099 | HGDP00099 | Male | Hazara | Not reported |
| HGDP00160 | HGDP00160 | Male | Makrani | Not reported |
| HGDP00157 | HGDP00157 | Female | Makrani | Not reported |
| HGDP00027 | HGDP00027 | Male | Brahui | Not reported |
| HGDP00031 | HGDP00031 | Male | Brahui | Not reported |
| HGDP00092 | HGDP00092 | Male | Balochi | Not reported |
| HGDP00019 | HGDP00019 | Male | Brahui | Not reported |
| HGDP00124 | HGDP00124 | Male | Hazara | Not reported |
| HGDP00021 | HGDP00021 | Male | Brahui | Not reported |
| HGDP00158 | HGDP00158 | Male | Makrani | Not reported |
| HGDP00135 | HGDP00135 | Male | Makrani | Not reported |
| HGDP00125 | HGDP00125 | Male | Hazara | Not reported |
| HGDP00005 | HGDP00005 | Male | Brahui | Not reported |
| HGDP00054 | HGDP00054 | Male | Balochi | Not reported |
| HGDP00049 | HGDP00049 | Male | Brahui | Not reported |
| HGDP00116 | HGDP00116 | Male | Hazara | Not reported |
| HGDP00052 | HGDP00052 | Male | Balochi | Not reported |
| HGDP00167 | HGDP00167 | Male | Sindhi | Not reported |
| HGDP00131 | HGDP00131 | Male | Makrani | Not reported |
| HGDP00082 | HGDP00082 | Male | Balochi | Not reported |
| HGDP00161 | HGDP00161 | Male | Makrani | Not reported |
| HGDP00029 | HGDP00029 | Male | Brahui | Not reported |
| HGDP00127 | HGDP00127 | Male | Hazara | Not reported |
| HGDP00009 | HGDP00009 | Male | Brahui | Not reported |
| HGDP00110 | HGDP00110 | Male | Hazara | Not reported |
| HGDP00045 | HGDP00045 | Male | Brahui | Not reported |
| HGDP00106 | HGDP00106 | Male | Hazara | Not reported |
| HGDP00122 | HGDP00122 | Male | Hazara | Not reported |
| HGDP00150 | HGDP00150 | Male | Makrani | Not reported |
| HGDP00121 | HGDP00121 | Male | Hazara | Not reported |
| HGDP00118 | HGDP00118 | Male | Hazara | Not reported |
| HGDP00070 | HGDP00070 | Male | Balochi | Not reported |
| HGDP00139 | HGDP00139 | Male | Makrani | Not reported |
| HGDP00041 | HGDP00041 | Male | Brahui | Not reported |
| HGDP00151 | HGDP00151 | Female | Makrani | Not reported |
| HGDP00011 | HGDP00011 | Male | Brahui | Not reported |
| HGDP00086 | HGDP00086 | Male | Balochi | Not reported |
| HGDP00102 | HGDP00102 | Male | Hazara | Not reported |
| HGDP00003 | HGDP00003 | Male | Brahui | Not reported |
| HGDP00163 | HGDP00163 | Male | Sindhi | Not reported |
| HGDP00141 | HGDP00141 | Male | Makrani | Not reported |
| HGDP00076 | HGDP00076 | Male | Balochi | Not reported |
| HGDP00154 | HGDP00154 | Female | Makrani | Not reported |
| HGDP00148 | HGDP00148 | Male | Makrani | Not reported |
| HGDP00047 | HGDP00047 | Male | Brahui | Not reported |
| HGDP00001 | HGDP00001 | Male | Brahui | Not reported |
| HGDP00165 | HGDP00165 | Male | Sindhi | Not reported |
| HGDP00134 | HGDP00134 | Male | Makrani | Not reported |
| HGDP00133 | HGDP00133 | Male | Makrani | Not reported |
| HGDP00155 | HGDP00155 | Female | Makrani | Not reported |
| HGDP00025 | HGDP00025 | Male | Brahui | Not reported |
| HGDP00120 | HGDP00120 | Male | Hazara | Not reported |
| HGDP00090 | HGDP00090 | Male | Balochi | Not reported |
| HGDP00058 | HGDP00058 | Male | Balochi | Not reported |
| HGDP00113 | HGDP00113 | Male | Hazara | Not reported |
| HGDP00066 | HGDP00066 | Male | Balochi | Not reported |
| HGDP00137 | HGDP00137 | Male | Makrani | Not reported |
| HGDP00105 | HGDP00105 | Male | Hazara | Not reported |
| HGDP00057 | HGDP00057 | Male | Balochi | Not reported |
| HGDP00094 | HGDP00094 | Male | Balochi | Not reported |
| HGDP00068 | HGDP00068 | Male | Balochi | Not reported |
| HGDP00129 | HGDP00129 | Male | Hazara | Not reported |
| HGDP00007 | HGDP00007 | Male | Brahui | Not reported |
| HGDP00098 | HGDP00098 | Male | Balochi | Not reported |
| HGDP00109 | HGDP00109 | Male | Hazara | Not reported |
| HGDP00078 | HGDP00078 | Male | Balochi | Not reported |
| HGDP00039 | HGDP00039 | Male | Brahui | Not reported |
| HGDP00143 | HGDP00143 | Male | Makrani | Not reported |
| HGDP00130 | HGDP00130 | Male | Makrani | Not reported |
| HGDP00140 | HGDP00140 | Male | Makrani | Not reported |
| HGDP00023 | HGDP00023 | Male | Brahui | Not reported |
| HGDP00062 | HGDP00062 | Male | Balochi | Not reported |
| HGDP00056 | HGDP00056 | Male | Balochi | Not reported |
| HGDP00100 | HGDP00100 | Male | Hazara | Not reported |
| HGDP00136 | HGDP00136 | Male | Makrani | Not reported |
| HGDP00088 | HGDP00088 | Male | Balochi | Not reported |
| HGDP00033 | HGDP00033 | Male | Brahui | Not reported |
| HGDP00017 | HGDP00017 | Male | Brahui | Not reported |
| HGDP00096 | HGDP00096 | Male | Balochi | Not reported |
| HGDP00035 | HGDP00035 | Male | Brahui | Not reported |
| HGDP00060 | HGDP00060 | Male | Balochi | Not reported |
| HGDP00149 | HGDP00149 | Male | Makrani | Not reported |
| HGDP00112 | HGDP00112 | Male | Hazara | Not reported |
| HGDP00103 | HGDP00103 | Male | Hazara | Not reported |
| HGDP00104 | HGDP00104 | Male | Hazara | Not reported |
| HGDP00072 | HGDP00072 | Male | Balochi | Not reported |
| HGDP00037 | HGDP00037 | Male | Brahui | Not reported |
| HGDP00153 | HGDP00153 | Female | Makrani | Not reported |
| HGDP00084 | HGDP00084 | Male | Balochi | Not reported |
| HGDP00013 | HGDP00013 | Male | Brahui | Not reported |
| HGDP00145 | HGDP00145 | Male | Makrani | Not reported |
| HGDP00015 | HGDP00015 | Male | Brahui | Not reported |
| HGDP00043 | HGDP00043 | Male | Brahui | Not reported |
- Sampleset ID:
- 3
- Name:
- NINDS-317+240K
- Sampleset Type:
- Control
- Description:
- Genotype data from NINDS were derived from two sets of neurological disease controls totaling 790 people and consist of individuals of European descent with no family history of or any first-degree relative with amyotrophic lateral sclerosis, ataxia, autism, brain aneurysm, dystonia, Parkinson disease, or schizophrenia. Illumina317K+240K Data. dbGAP Accession: phs000089
- Size:
- 226
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- None reported
| Sample ID | Cell Type | Subject ID | Ethnicity | Subject Phenotype |
|---|---|---|---|---|
| NINDS_169 | B-lymphocyte | NINDS_169 | Caucasian | Not reported |
| NINDS_119 | B-lymphocyte | NINDS_119 | Caucasian | Not reported |
| NINDS_173 | B-lymphocyte | NINDS_173 | Caucasian | Not reported |
| NINDS_17 | B-lymphocyte | NINDS_17 | Caucasian | Not reported |
| NINDS_165 | B-lymphocyte | NINDS_165 | Caucasian | Not reported |
| NINDS_206 | B-lymphocyte | NINDS_206 | Caucasian | Not reported |
| NINDS_194 | B-lymphocyte | NINDS_194 | Caucasian | Not reported |
| NINDS_166 | B-lymphocyte | NINDS_166 | Caucasian | Not reported |
| NINDS_133 | B-lymphocyte | NINDS_133 | Caucasian | Not reported |
| NINDS_179 | B-lymphocyte | NINDS_179 | Caucasian | Not reported |
| NINDS_167 | B-lymphocyte | NINDS_167 | Caucasian | Not reported |
| NINDS_123 | B-lymphocyte | NINDS_123 | Caucasian | Not reported |
| NINDS_159 | B-lymphocyte | NINDS_159 | Caucasian | Not reported |
| NINDS_106 | B-lymphocyte | NINDS_106 | Caucasian | Not reported |
| NINDS_124 | B-lymphocyte | NINDS_124 | Caucasian | Not reported |
| NINDS_158 | B-lymphocyte | NINDS_158 | Caucasian | Not reported |
| NINDS_200 | B-lymphocyte | NINDS_200 | Caucasian | Not reported |
| NINDS_2 | B-lymphocyte | NINDS_2 | Caucasian | Not reported |
| NINDS_198 | B-lymphocyte | NINDS_198 | Caucasian | Not reported |
| NINDS_105 | B-lymphocyte | NINDS_105 | Caucasian | Not reported |
| NINDS_131 | B-lymphocyte | NINDS_131 | Caucasian | Not reported |
| NINDS_104 | B-lymphocyte | NINDS_104 | Caucasian | Not reported |
| NINDS_193 | B-lymphocyte | NINDS_193 | Caucasian | Not reported |
| NINDS_163 | B-lymphocyte | NINDS_163 | Caucasian | Not reported |
| NINDS_186 | B-lymphocyte | NINDS_186 | Caucasian | Not reported |
| NINDS_130 | B-lymphocyte | NINDS_130 | Caucasian | Not reported |
| NINDS_118 | B-lymphocyte | NINDS_118 | Caucasian | Not reported |
| NINDS_210 | B-lymphocyte | NINDS_210 | Caucasian | Not reported |
| NINDS_160 | B-lymphocyte | NINDS_160 | Caucasian | Not reported |
| NINDS_152 | B-lymphocyte | NINDS_152 | Caucasian | Not reported |
| NINDS_155 | B-lymphocyte | NINDS_155 | Caucasian | Not reported |
| NINDS_100 | B-lymphocyte | NINDS_100 | Caucasian | Not reported |
| NINDS_174 | B-lymphocyte | NINDS_174 | Caucasian | Not reported |
| NINDS_195 | B-lymphocyte | NINDS_195 | Caucasian | Not reported |
| NINDS_156 | B-lymphocyte | NINDS_156 | Caucasian | Not reported |
| NINDS_127 | B-lymphocyte | NINDS_127 | Caucasian | Not reported |
| NINDS_120 | B-lymphocyte | NINDS_120 | Caucasian | Not reported |
| NINDS_109 | B-lymphocyte | NINDS_109 | Caucasian | Not reported |
| NINDS_129 | B-lymphocyte | NINDS_129 | Caucasian | Not reported |
| NINDS_208 | B-lymphocyte | NINDS_208 | Caucasian | Not reported |
| NINDS_19 | B-lymphocyte | NINDS_19 | Caucasian | Not reported |
| NINDS_182 | B-lymphocyte | NINDS_182 | Caucasian | Not reported |
| NINDS_178 | B-lymphocyte | NINDS_178 | Caucasian | Not reported |
| NINDS_132 | B-lymphocyte | NINDS_132 | Caucasian | Not reported |
| NINDS_110 | B-lymphocyte | NINDS_110 | Caucasian | Not reported |
| NINDS_204 | B-lymphocyte | NINDS_204 | Caucasian | Not reported |
| NINDS_111 | B-lymphocyte | NINDS_111 | Caucasian | Not reported |
| NINDS_180 | B-lymphocyte | NINDS_180 | Caucasian | Not reported |
| NINDS_14 | B-lymphocyte | NINDS_14 | Caucasian | Not reported |
| NINDS_151 | B-lymphocyte | NINDS_151 | Caucasian | Not reported |
| NINDS_211 | B-lymphocyte | NINDS_211 | Caucasian | Not reported |
| NINDS_21 | B-lymphocyte | NINDS_21 | Caucasian | Not reported |
| NINDS_192 | B-lymphocyte | NINDS_192 | Caucasian | Not reported |
| NINDS_171 | B-lymphocyte | NINDS_171 | Caucasian | Not reported |
| NINDS_201 | B-lymphocyte | NINDS_201 | Caucasian | Not reported |
| NINDS_13 | B-lymphocyte | NINDS_13 | Caucasian | Not reported |
| NINDS_196 | B-lymphocyte | NINDS_196 | Caucasian | Not reported |
| NINDS_101 | B-lymphocyte | NINDS_101 | Caucasian | Not reported |
| NINDS_209 | B-lymphocyte | NINDS_209 | Caucasian | Not reported |
| NINDS_207 | B-lymphocyte | NINDS_207 | Caucasian | Not reported |
| NINDS_184 | B-lymphocyte | NINDS_184 | Caucasian | Not reported |
| NINDS_162 | B-lymphocyte | NINDS_162 | Caucasian | Not reported |
| NINDS_12 | B-lymphocyte | NINDS_12 | Caucasian | Not reported |
| NINDS_136 | B-lymphocyte | NINDS_136 | Caucasian | Not reported |
| NINDS_181 | B-lymphocyte | NINDS_181 | Caucasian | Not reported |
| NINDS_170 | B-lymphocyte | NINDS_170 | Caucasian | Not reported |
| NINDS_139 | B-lymphocyte | NINDS_139 | Caucasian | Not reported |
| NINDS_205 | B-lymphocyte | NINDS_205 | Caucasian | Not reported |
| NINDS_103 | B-lymphocyte | NINDS_103 | Caucasian | Not reported |
| NINDS_149 | B-lymphocyte | NINDS_149 | Caucasian | Not reported |
| NINDS_172 | B-lymphocyte | NINDS_172 | Caucasian | Not reported |
| NINDS_16 | B-lymphocyte | NINDS_16 | Caucasian | Not reported |
| NINDS_146 | B-lymphocyte | NINDS_146 | Caucasian | Not reported |
| NINDS_117 | B-lymphocyte | NINDS_117 | Caucasian | Not reported |
| NINDS_203 | B-lymphocyte | NINDS_203 | Caucasian | Not reported |
| NINDS_191 | B-lymphocyte | NINDS_191 | Caucasian | Not reported |
| NINDS_183 | B-lymphocyte | NINDS_183 | Caucasian | Not reported |
| NINDS_15 | B-lymphocyte | NINDS_15 | Caucasian | Not reported |
| NINDS_190 | B-lymphocyte | NINDS_190 | Caucasian | Not reported |
| NINDS_135 | B-lymphocyte | NINDS_135 | Caucasian | Not reported |
| NINDS_145 | B-lymphocyte | NINDS_145 | Caucasian | Not reported |
| NINDS_168 | B-lymphocyte | NINDS_168 | Caucasian | Not reported |
| NINDS_112 | B-lymphocyte | NINDS_112 | Caucasian | Not reported |
| NINDS_199 | B-lymphocyte | NINDS_199 | Caucasian | Not reported |
| NINDS_125 | B-lymphocyte | NINDS_125 | Caucasian | Not reported |
| NINDS_18 | B-lymphocyte | NINDS_18 | Caucasian | Not reported |
| NINDS_114 | B-lymphocyte | NINDS_114 | Caucasian | Not reported |
| NINDS_113 | B-lymphocyte | NINDS_113 | Caucasian | Not reported |
| NINDS_115 | B-lymphocyte | NINDS_115 | Caucasian | Not reported |
| NINDS_10 | B-lymphocyte | NINDS_10 | Caucasian | Not reported |
| NINDS_212 | B-lymphocyte | NINDS_212 | Caucasian | Not reported |
| NINDS_142 | B-lymphocyte | NINDS_142 | Caucasian | Not reported |
| NINDS_197 | B-lymphocyte | NINDS_197 | Caucasian | Not reported |
| NINDS_134 | B-lymphocyte | NINDS_134 | Caucasian | Not reported |
| NINDS_202 | B-lymphocyte | NINDS_202 | Caucasian | Not reported |
| NINDS_116 | B-lymphocyte | NINDS_116 | Caucasian | Not reported |
| NINDS_20 | B-lymphocyte | NINDS_20 | Caucasian | Not reported |
| NINDS_189 | B-lymphocyte | NINDS_189 | Caucasian | Not reported |
| NINDS_147 | B-lymphocyte | NINDS_147 | Caucasian | Not reported |
| NINDS_102 | B-lymphocyte | NINDS_102 | Caucasian | Not reported |
- Sampleset ID:
- 4
- Name:
- NINDS-550K
- Sampleset Type:
- Control
- Description:
- Genotype data from NINDS were derived from two sets of neurological disease controls totaling 790 people and consist of individuals of European descent with no family history of or any first-degree relative with amyotrophic lateral sclerosis, ataxia, autism, brain aneurysm, dystonia, Parkinson disease, or schizophrenia. Illumina 550K Data. dbGAP Accession: phs000089
- Size:
- 441
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- None reported
| Sample ID | Cell Type | Subject ID | Ethnicity | Subject Phenotype |
|---|---|---|---|---|
| 1780854105_A | B-lymphocyte | 1780854105_A | Caucasian | Not reported |
| 1780854341_A | B-lymphocyte | 1780854341_A | Caucasian | Not reported |
| 1780854382_A | B-lymphocyte | 1780854382_A | Caucasian | Not reported |
| 1780854337_A | B-lymphocyte | 1780854337_A | Caucasian | Not reported |
| 1780854202_A | B-lymphocyte | 1780854202_A | Caucasian | Not reported |
| 1780854017_A | B-lymphocyte | 1780854017_A | Caucasian | Not reported |
| 1780854326_A | B-lymphocyte | 1780854326_A | Caucasian | Not reported |
| 1780854184_A | B-lymphocyte | 1780854184_A | Caucasian | Not reported |
| 1780854159_A | B-lymphocyte | 1780854159_A | Caucasian | Not reported |
| 1780854097_A | B-lymphocyte | 1780854097_A | Caucasian | Not reported |
| 1780854401_A | B-lymphocyte | 1780854401_A | Caucasian | Not reported |
| 1780854392_A | B-lymphocyte | 1780854392_A | Caucasian | Not reported |
| 1780854327_A | B-lymphocyte | 1780854327_A | Caucasian | Not reported |
| 1780854416_A | B-lymphocyte | 1780854416_A | Caucasian | Not reported |
| 1780854391_A | B-lymphocyte | 1780854391_A | Caucasian | Not reported |
| 1780854090_A | B-lymphocyte | 1780854090_A | Caucasian | Not reported |
| 1780854016_A | B-lymphocyte | 1780854016_A | Caucasian | Not reported |
| 1780854278_A | B-lymphocyte | 1780854278_A | Caucasian | Not reported |
| 1780854336_A | B-lymphocyte | 1780854336_A | Caucasian | Not reported |
| 1780854436_A | B-lymphocyte | 1780854436_A | Caucasian | Not reported |
| 1780854393_A | B-lymphocyte | 1780854393_A | Caucasian | Not reported |
| 1780854128_A | B-lymphocyte | 1780854128_A | Caucasian | Not reported |
| 1780846321_A | B-lymphocyte | 1780846321_A | Caucasian | Not reported |
| 1780846320_A | B-lymphocyte | 1780846320_A | Caucasian | Not reported |
| 1780854079_A | B-lymphocyte | 1780854079_A | Caucasian | Not reported |
| 1780854038_A | B-lymphocyte | 1780854038_A | Caucasian | Not reported |
| 1780846029_A | B-lymphocyte | 1780846029_A | Caucasian | Not reported |
| 1780854058_A | B-lymphocyte | 1780854058_A | Caucasian | Not reported |
| 1780854198_A | B-lymphocyte | 1780854198_A | Caucasian | Not reported |
| 1780854009_A | B-lymphocyte | 1780854009_A | Caucasian | Not reported |
| 1780854437_A | B-lymphocyte | 1780854437_A | Caucasian | Not reported |
| 1780854279_A | B-lymphocyte | 1780854279_A | Caucasian | Not reported |
| 1780854261_A | B-lymphocyte | 1780854261_A | Caucasian | Not reported |
| 1780846322_A | B-lymphocyte | 1780846322_A | Caucasian | Not reported |
| 1780854253_A | B-lymphocyte | 1780854253_A | Caucasian | Not reported |
| 1780854318_A | B-lymphocyte | 1780854318_A | Caucasian | Not reported |
| 1780854185_A | B-lymphocyte | 1780854185_A | Caucasian | Not reported |
| 1780854257_A | B-lymphocyte | 1780854257_A | Caucasian | Not reported |
| 1780854357_A | B-lymphocyte | 1780854357_A | Caucasian | Not reported |
| 1780854340_A | B-lymphocyte | 1780854340_A | Caucasian | Not reported |
| 1780854081_A | B-lymphocyte | 1780854081_A | Caucasian | Not reported |
| 1780846004_A | B-lymphocyte | 1780846004_A | Caucasian | Not reported |
| 1780854296_A | B-lymphocyte | 1780854296_A | Caucasian | Not reported |
| 1780854098_A | B-lymphocyte | 1780854098_A | Caucasian | Not reported |
| 1780854100_A | B-lymphocyte | 1780854100_A | Caucasian | Not reported |
| 1780854305_A | B-lymphocyte | 1780854305_A | Caucasian | Not reported |
| 1780854288_A | B-lymphocyte | 1780854288_A | Caucasian | Not reported |
| 1780854210_A | B-lymphocyte | 1780854210_A | Caucasian | Not reported |
| 1780854196_A | B-lymphocyte | 1780854196_A | Caucasian | Not reported |
| 1780854065_A | B-lymphocyte | 1780854065_A | Caucasian | Not reported |
| 1780854294_A | B-lymphocyte | 1780854294_A | Caucasian | Not reported |
| 1780854205_A | B-lymphocyte | 1780854205_A | Caucasian | Not reported |
| 1780854123_A | B-lymphocyte | 1780854123_A | Caucasian | Not reported |
| 1780854023_A | B-lymphocyte | 1780854023_A | Caucasian | Not reported |
| 1780854158_A | B-lymphocyte | 1780854158_A | Caucasian | Not reported |
| 1780854235_A | B-lymphocyte | 1780854235_A | Caucasian | Not reported |
| 1780854063_A | B-lymphocyte | 1780854063_A | Caucasian | Not reported |
| 1780854179_A | B-lymphocyte | 1780854179_A | Caucasian | Not reported |
| 1780854129_A | B-lymphocyte | 1780854129_A | Caucasian | Not reported |
| 1780854117_A | B-lymphocyte | 1780854117_A | Caucasian | Not reported |
| 1780854313_A | B-lymphocyte | 1780854313_A | Caucasian | Not reported |
| 1780854101_A | B-lymphocyte | 1780854101_A | Caucasian | Not reported |
| 1780854206_A | B-lymphocyte | 1780854206_A | Caucasian | Not reported |
| 1780854325_A | B-lymphocyte | 1780854325_A | Caucasian | Not reported |
| 1780846005_A | B-lymphocyte | 1780846005_A | Caucasian | Not reported |
| 1780854293_A | B-lymphocyte | 1780854293_A | Caucasian | Not reported |
| 1780854095_A | B-lymphocyte | 1780854095_A | Caucasian | Not reported |
| 1780854354_A | B-lymphocyte | 1780854354_A | Caucasian | Not reported |
| 1780854295_A | B-lymphocyte | 1780854295_A | Caucasian | Not reported |
| 1780846030_A | B-lymphocyte | 1780846030_A | Caucasian | Not reported |
| 1780854339_A | B-lymphocyte | 1780854339_A | Caucasian | Not reported |
| 1780854384_A | B-lymphocyte | 1780854384_A | Caucasian | Not reported |
| 1780854418_A | B-lymphocyte | 1780854418_A | Caucasian | Not reported |
| 1780854362_A | B-lymphocyte | 1780854362_A | Caucasian | Not reported |
| 1780854338_A | B-lymphocyte | 1780854338_A | Caucasian | Not reported |
| 1780854216_A | B-lymphocyte | 1780854216_A | Caucasian | Not reported |
| 1780854299_A | B-lymphocyte | 1780854299_A | Caucasian | Not reported |
| 1780854130_A | B-lymphocyte | 1780854130_A | Caucasian | Not reported |
| 1780854061_A | B-lymphocyte | 1780854061_A | Caucasian | Not reported |
| 1780854322_A | B-lymphocyte | 1780854322_A | Caucasian | Not reported |
| 1780854328_A | B-lymphocyte | 1780854328_A | Caucasian | Not reported |
| 1780854197_A | B-lymphocyte | 1780854197_A | Caucasian | Not reported |
| 1780854080_A | B-lymphocyte | 1780854080_A | Caucasian | Not reported |
| 1780854334_A | B-lymphocyte | 1780854334_A | Caucasian | Not reported |
| 1780854039_A | B-lymphocyte | 1780854039_A | Caucasian | Not reported |
| 1780854419_A | B-lymphocyte | 1780854419_A | Caucasian | Not reported |
| 1780854127_A | B-lymphocyte | 1780854127_A | Caucasian | Not reported |
| 1780854219_A | B-lymphocyte | 1780854219_A | Caucasian | Not reported |
| 1780854264_A | B-lymphocyte | 1780854264_A | Caucasian | Not reported |
| 1780854238_A | B-lymphocyte | 1780854238_A | Caucasian | Not reported |
| 1780854215_A | B-lymphocyte | 1780854215_A | Caucasian | Not reported |
| 1780854302_A | B-lymphocyte | 1780854302_A | Caucasian | Not reported |
| 1780854096_A | B-lymphocyte | 1780854096_A | Caucasian | Not reported |
| 1780854417_A | B-lymphocyte | 1780854417_A | Caucasian | Not reported |
| 1780854335_A | B-lymphocyte | 1780854335_A | Caucasian | Not reported |
| 1780854260_A | B-lymphocyte | 1780854260_A | Caucasian | Not reported |
| 1780854231_A | B-lymphocyte | 1780854231_A | Caucasian | Not reported |
| 1780854430_A | B-lymphocyte | 1780854430_A | Caucasian | Not reported |
| 1780854176_A | B-lymphocyte | 1780854176_A | Caucasian | Not reported |
| 1780854118_A | B-lymphocyte | 1780854118_A | Caucasian | Not reported |
- Sampleset ID:
- 5
- Name:
- PARC (CAP AND PRINCE)
- Sampleset Type:
- Control
- Description:
- The PARC samples are a subset of the cohorts used in two statin trials, CAP and PRINCE and consist of 960 middle-age (40-70 years) individuals of European descent living in the United States with moderately high levels of total cholesterol. Illumina 317K Data. PMIDs:11434828, 16516587
- Size:
- 936 (sample data not available)
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- None reported
- Sampleset ID:
- 6
- Name:
- London
- Sampleset Type:
- Control
- Description:
- The London samples represent parents of asthamic children from Mexico City. Illumina 550KData. PMID:19714205
- Size:
- 760 (sample data not available)
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- None reported
- Sampleset ID:
- 7
- Name:
- PARC (CAP2)
- Sampleset Type:
- Control
- Description:
- The PARC samples are a subset of the cohorts used in two statin trials, CAP2 and PRINCE2 and consist of middle-age (40-70 years) individuals of European descent living in the United States with moderately high levels of total cholesterol. N=232 after sample quality control. Illumina 610K Quad Data. PMIDs:11434828, 16516587
- Size:
- 232 (sample data not available)
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- None reported
- Sampleset ID:
- 8
- Name:
- PARC (PRINCE2)
- Sampleset Type:
- Control
- Description:
- The PARC samples are a subset of the cohorts used in two statin trials, CAP2 and PRINCE2 and consist of middle-age (40-70 years) individuals of European descent living in the United States with moderately high levels of total cholesterol. N=232 after sample quality control. Illumina 610K Quad Data. PMIDs:11434828, 16516587
- Size:
- 534 (sample data not available)
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- None reported
- Sampleset ID:
- 9
- Name:
- FHCRC
- Sampleset Type:
- Control
- Description:
- The FHCRC set are part of an ongoing Genome-wide Association Study to Identify Genetic Components of Hip Fracture in the Women's Health Initiative. Samples represent Post-menopausal (50-79 years) Female controls for pancreatic cancer, colon cancer, and cases and controls for a hip fracture study. Illumina 610 Quadv1_B Data
- Size:
- 1,430 (sample data not available)
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- None reported
- Sampleset ID:
- 10
- Name:
- inChianti
- Sampleset Type:
- Control
- Description:
- Population-based study of older persons living in the Chianti geographic area. Illumina 550v3_A Data
- Size:
- 695 (sample data not available)
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- None reported
- Sampleset ID:
- 11
- Name:
- WTCCC2-NBS
- Sampleset Type:
- Control
- Description:
- UK Blood Service Control Group (blood donors, age range 18-69 years). Custom Illumina 1.2M Data. PMID: 20360734 Study website: https://www.wtccc.org.uk/
- Size:
- 2,090 (sample data not available)
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- None reported
- Sampleset ID:
- 12
- Name:
- Aggregation of Samplesets 2-12
- Sampleset Type:
- Control
- Description:
- Aggregate sampleset for use as reference_value in Experiment 2
- Size:
- 8,329 (sample data not available)
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- None reported
Experimental Details
| Experiment ID | Type | Method | Analysis | Number of Variant Calls |
|---|---|---|---|---|
| 1 | Discovery | Oligo aCGH | Probe signal intensity | 16,526 |
| 2 | Discovery | SNP array | SNP genotyping analysis | 452,383 |