nstd47 (Kidd et al. 2010b)
- Organism:
- Human
- Study Type:
- Control Set
- Submitter:
- Jeffrey Kidd
- Submitter URL:
- http://hgsv.washington.edu/
- Description:
- A human genome structural variation sequencing resource reveals insights into mutational mechanisms. See Variant Summary counts for nstd47 in dbVar Variant Summary.
- Project:
- PRJNA29893
- Publication(s):
- Kidd et al. 2010
Detailed Information: Download 1167 Variant Regions, Download 1167 Variant Calls, Download Both, FTP
Variant Summary
Assembly used for analysis:
Remapped: GRCh38.p12 (hg38)
Remapped: GRCh37.p13 (hg19)
Submitted: NCBI36 (hg18)
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.11 | Chr1 | 94 | 94 | Remapped | NC_000001.11 |
| NC_000002.12 | Chr2 | 96 | 96 | Remapped | NC_000002.12 |
| NC_000003.12 | Chr3 | 77 | 77 | Remapped | NC_000003.12 |
| NC_000004.12 | Chr4 | 78 | 78 | Remapped | NC_000004.12 |
| NC_000005.10 | Chr5 | 58 | 58 | Remapped | NC_000005.10 |
| NC_000006.12 | Chr6 | 76 | 76 | Remapped | NC_000006.12 |
| NC_000007.14 | Chr7 | 64 | 64 | Remapped | NC_000007.14 |
| NC_000008.11 | Chr8 | 69 | 69 | Remapped | NC_000008.11 |
| NC_000009.12 | Chr9 | 37 | 37 | Remapped | NC_000009.12 |
| NC_000010.11 | Chr10 | 42 | 42 | Remapped | NC_000010.11 |
| NC_000011.10 | Chr11 | 61 | 61 | Remapped | NC_000011.10 |
| NC_000012.12 | Chr12 | 54 | 54 | Remapped | NC_000012.12 |
| NC_000013.11 | Chr13 | 29 | 29 | Remapped | NC_000013.11 |
| NC_000014.9 | Chr14 | 34 | 34 | Remapped | NC_000014.9 |
| NC_000015.10 | Chr15 | 32 | 32 | Remapped | NC_000015.10 |
| NC_000016.10 | Chr16 | 33 | 33 | Remapped | NC_000016.10 |
| NC_000017.11 | Chr17 | 32 | 32 | Remapped | NC_000017.11 |
| NC_000018.10 | Chr18 | 28 | 28 | Remapped | NC_000018.10 |
| NC_000019.10 | Chr19 | 27 | 27 | Remapped | NC_000019.10 |
| NC_000020.11 | Chr20 | 24 | 24 | Remapped | NC_000020.11 |
| NC_000021.9 | Chr21 | 14 | 14 | Remapped | NC_000021.9 |
| NC_000022.11 | Chr22 | 21 | 21 | Remapped | NC_000022.11 |
| NC_000023.11 | ChrX | 58 | 58 | Remapped | NC_000023.11 |
| NC_000024.10 | ChrY | 1 | 1 | Remapped | NC_000024.10 |
| NW_011332687.1 | Chr1|NW_011332687.1 | 1 | 1 | Remapped | NW_011332687.1 |
| NW_017852928.1 | Chr1|NW_017852928.1 | 3 | 3 | Remapped | NW_017852928.1 |
| NW_018654707.1 | Chr1|NW_018654707.1 | 1 | 1 | Remapped | NW_018654707.1 |
| NT_187525.1 | Chr2|NT_187525.1 | 2 | 2 | Remapped | NT_187525.1 |
| NT_187531.1 | Chr2|NT_187531.1 | 1 | 1 | Remapped | NT_187531.1 |
| NW_012132915.1 | Chr2|NW_012132915.1 | 2 | 2 | Remapped | NW_012132915.1 |
| NT_187537.1 | Chr3|NT_187537.1 | 1 | 1 | Remapped | NT_187537.1 |
| NW_003315913.1 | Chr3|NW_003315913.1 | 2 | 2 | Remapped | NW_003315913.1 |
| NT_187542.1 | Chr4|NT_187542.1 | 1 | 1 | Remapped | NT_187542.1 |
| NT_187544.1 | Chr4|NT_187544.1 | 1 | 1 | Remapped | NT_187544.1 |
| NW_013171799.1 | Chr4|NW_013171799.1 | 1 | 1 | Remapped | NW_013171799.1 |
| NT_187651.1 | Chr5|NT_187651.1 | 1 | 1 | Remapped | NT_187651.1 |
| NW_009646199.1 | Chr5|NW_009646199.1 | 1 | 1 | Remapped | NW_009646199.1 |
| NW_016107298.1 | Chr5|NW_016107298.1 | 1 | 1 | Remapped | NW_016107298.1 |
| NT_167246.2 | Chr6|NT_167246.2 | 2 | 2 | Remapped | NT_167246.2 |
| NT_167247.2 | Chr6|NT_167247.2 | 2 | 2 | Remapped | NT_167247.2 |
| NT_167249.2 | Chr6|NT_167249.2 | 1 | 1 | Remapped | NT_167249.2 |
| NT_187554.1 | Chr6|NT_187554.1 | 1 | 1 | Remapped | NT_187554.1 |
| NW_009646200.1 | Chr6|NW_009646200.1 | 1 | 1 | Remapped | NW_009646200.1 |
| NT_187558.1 | Chr7|NT_187558.1 | 1 | 1 | Remapped | NT_187558.1 |
| NT_187559.1 | Chr7|NT_187559.1 | 1 | 1 | Remapped | NT_187559.1 |
| NT_187562.1 | Chr7|NT_187562.1 | 4 | 4 | Remapped | NT_187562.1 |
| NT_187653.1 | Chr7|NT_187653.1 | 1 | 1 | Remapped | NT_187653.1 |
| NW_003315922.2 | Chr7|NW_003315922.2 | 1 | 1 | Remapped | NW_003315922.2 |
| NW_017852930.1 | Chr7|NW_017852930.1 | 4 | 4 | Remapped | NW_017852930.1 |
| NW_018654714.1 | Chr7|NW_018654714.1 | 1 | 1 | Remapped | NW_018654714.1 |
| NT_187567.1 | Chr8|NT_187567.1 | 1 | 1 | Remapped | NT_187567.1 |
| NT_187568.1 | Chr8|NT_187568.1 | 2 | 2 | Remapped | NT_187568.1 |
| NT_187575.1 | Chr8|NT_187575.1 | 2 | 2 | Remapped | NT_187575.1 |
| NT_187576.1 | Chr8|NT_187576.1 | 1 | 1 | Remapped | NT_187576.1 |
| NT_187654.1 | Chr8|NT_187654.1 | 1 | 1 | Remapped | NT_187654.1 |
| NW_017852931.1 | Chr8|NW_017852931.1 | 1 | 1 | Remapped | NW_017852931.1 |
| NW_018654717.1 | Chr8|NW_018654717.1 | 1 | 1 | Remapped | NW_018654717.1 |
| NW_003315930.1 | Chr9|NW_003315930.1 | 1 | 1 | Remapped | NW_003315930.1 |
| NT_187579.1 | Chr10|NT_187579.1 | 1 | 1 | Remapped | NT_187579.1 |
| NW_003315934.1 | Chr10|NW_003315934.1 | 1 | 1 | Remapped | NW_003315934.1 |
| NT_187681.1 | Chr11|NT_187681.1 | 2 | 2 | Remapped | NT_187681.1 |
| NT_187582.1 | Chr11|NT_187582.1 | 1 | 1 | Remapped | NT_187582.1 |
| NT_187583.1 | Chr11|NT_187583.1 | 1 | 1 | Remapped | NT_187583.1 |
| NW_011332695.1 | Chr11|NW_011332695.1 | 2 | 2 | Remapped | NW_011332695.1 |
| NW_015148966.1 | Chr11|NW_015148966.1 | 2 | 2 | Remapped | NW_015148966.1 |
| NW_003315940.1 | Chr12|NW_003315940.1 | 1 | 1 | Remapped | NW_003315940.1 |
| NW_009646204.1 | Chr12|NW_009646204.1 | 2 | 2 | Remapped | NW_009646204.1 |
| NW_019805499.1 | Chr12|NW_019805499.1 | 1 | 1 | Remapped | NW_019805499.1 |
| NT_187593.1 | Chr13|NT_187593.1 | 1 | 1 | Remapped | NT_187593.1 |
| NT_187595.1 | Chr13|NT_187595.1 | 1 | 1 | Remapped | NT_187595.1 |
| NW_011332699.1 | Chr13|NW_011332699.1 | 2 | 2 | Remapped | NW_011332699.1 |
| NT_187600.1 | Chr14|NT_187600.1 | 2 | 2 | Remapped | NT_187600.1 |
| NW_003315944.2 | Chr15|NW_003315944.2 | 2 | 2 | Remapped | NW_003315944.2 |
| NT_187607.1 | Chr16|NT_187607.1 | 2 | 2 | Remapped | NT_187607.1 |
| NW_017852933.1 | Chr16|NW_017852933.1 | 1 | 1 | Remapped | NW_017852933.1 |
| NW_003871093.1 | Chr17|NW_003871093.1 | 1 | 1 | Remapped | NW_003871093.1 |
| NT_187616.1 | Chr17|NT_187616.1 | 2 | 2 | Remapped | NT_187616.1 |
| NW_003315952.3 | Chr17|NW_003315952.3 | 2 | 2 | Remapped | NW_003315952.3 |
| NW_003871092.1 | Chr17|NW_003871092.1 | 1 | 1 | Remapped | NW_003871092.1 |
| NW_019805501.1 | Chr17|NW_019805501.1 | 2 | 2 | Remapped | NW_019805501.1 |
| NT_187666.1 | Chr18|NT_187666.1 | 2 | 2 | Remapped | NT_187666.1 |
| NW_003315956.1 | Chr18|NW_003315956.1 | 2 | 2 | Remapped | NW_003315956.1 |
| NW_003315957.1 | Chr18|NW_003315957.1 | 2 | 2 | Remapped | NW_003315957.1 |
| NW_003315961.1 | Chr18|NW_003315961.1 | 2 | 2 | Remapped | NW_003315961.1 |
| NW_018654724.1 | Chr18|NW_018654724.1 | 1 | 1 | Remapped | NW_018654724.1 |
| NT_187693.1 | Chr19|NT_187693.1 | 3 | 3 | Remapped | NT_187693.1 |
| NW_003571061.2 | Chr19|NW_003571061.2 | 2 | 2 | Remapped | NW_003571061.2 |
| NW_003571057.2 | Chr19|NW_003571057.2 | 1 | 1 | Remapped | NW_003571057.2 |
| NW_003571058.2 | Chr19|NW_003571058.2 | 1 | 1 | Remapped | NW_003571058.2 |
| NW_003571059.2 | Chr19|NW_003571059.2 | 1 | 1 | Remapped | NW_003571059.2 |
| NW_003571060.1 | Chr19|NW_003571060.1 | 2 | 2 | Remapped | NW_003571060.1 |
| NW_003571056.2 | Chr19|NW_003571056.2 | 1 | 1 | Remapped | NW_003571056.2 |
| NW_003571055.2 | Chr19|NW_003571055.2 | 2 | 2 | Remapped | NW_003571055.2 |
| NW_003315963.1 | Chr19|NW_003315963.1 | 2 | 2 | Remapped | NW_003315963.1 |
| NW_003315964.2 | Chr19|NW_003315964.2 | 1 | 1 | Remapped | NW_003315964.2 |
| NW_003571054.1 | Chr19|NW_003571054.1 | 3 | 3 | Remapped | NW_003571054.1 |
| NW_003315966.2 | Chr20|NW_003315966.2 | 1 | 1 | Remapped | NW_003315966.2 |
| NW_003315968.2 | Chr21|NW_003315968.2 | 1 | 1 | Remapped | NW_003315968.2 |
| NW_003315970.2 | Chr21|NW_003315970.2 | 1 | 1 | Remapped | NW_003315970.2 |
| NT_187682.1 | Chr22|NT_187682.1 | 1 | 1 | Remapped | NT_187682.1 |
| NT_187629.1 | Chr22|NT_187629.1 | 2 | 2 | Remapped | NT_187629.1 |
| NT_187630.1 | Chr22|NT_187630.1 | 1 | 1 | Remapped | NT_187630.1 |
| NT_187633.1 | Chr22|NT_187633.1 | 3 | 3 | Remapped | NT_187633.1 |
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.10 | Chr1 | 96 | 96 | Remapped | NC_000001.10 |
| NC_000002.11 | Chr2 | 99 | 99 | Remapped | NC_000002.11 |
| NC_000003.11 | Chr3 | 77 | 77 | Remapped | NC_000003.11 |
| NC_000004.11 | Chr4 | 79 | 79 | Remapped | NC_000004.11 |
| NC_000005.9 | Chr5 | 58 | 58 | Remapped | NC_000005.9 |
| NC_000006.11 | Chr6 | 77 | 77 | Remapped | NC_000006.11 |
| NC_000007.13 | Chr7 | 67 | 67 | Remapped | NC_000007.13 |
| NC_000008.10 | Chr8 | 71 | 71 | Remapped | NC_000008.10 |
| NC_000009.11 | Chr9 | 39 | 39 | Remapped | NC_000009.11 |
| NC_000010.10 | Chr10 | 42 | 42 | Remapped | NC_000010.10 |
| NC_000011.9 | Chr11 | 61 | 61 | Remapped | NC_000011.9 |
| NC_000012.11 | Chr12 | 54 | 54 | Remapped | NC_000012.11 |
| NC_000013.10 | Chr13 | 29 | 29 | Remapped | NC_000013.10 |
| NC_000014.8 | Chr14 | 35 | 35 | Remapped | NC_000014.8 |
| NC_000015.9 | Chr15 | 33 | 33 | Remapped | NC_000015.9 |
| NC_000016.9 | Chr16 | 33 | 33 | Remapped | NC_000016.9 |
| NC_000017.10 | Chr17 | 27 | 27 | Remapped | NC_000017.10 |
| NC_000018.9 | Chr18 | 28 | 28 | Remapped | NC_000018.9 |
| NC_000019.9 | Chr19 | 28 | 28 | Remapped | NC_000019.9 |
| NC_000020.10 | Chr20 | 26 | 26 | Remapped | NC_000020.10 |
| NC_000021.8 | Chr21 | 14 | 14 | Remapped | NC_000021.8 |
| NC_000022.10 | Chr22 | 24 | 24 | Remapped | NC_000022.10 |
| NC_000023.10 | ChrX | 57 | 57 | Remapped | NC_000023.10 |
| NC_000024.9 | ChrY | 1 | 1 | Remapped | NC_000024.9 |
| NW_003315903.1 | Chr1|NW_003315903.1 | 1 | 1 | Remapped | NW_003315903.1 |
| NW_003571030.1 | Chr1|NW_003571030.1 | 1 | 1 | Remapped | NW_003571030.1 |
| NW_003871055.3 | Chr1|NW_003871055.3 | 1 | 1 | Remapped | NW_003871055.3 |
| NW_003871057.1 | Chr1|NW_003871057.1 | 1 | 1 | Remapped | NW_003871057.1 |
| NW_003315913.1 | Chr3|NW_003315913.1 | 2 | 2 | Remapped | NW_003315913.1 |
| NW_003571035.1 | Chr4|NW_003571035.1 | 2 | 2 | Remapped | NW_003571035.1 |
| NW_004775428.1 | Chr5|NW_004775428.1 | 1 | 1 | Remapped | NW_004775428.1 |
| NT_167246.1 | Chr6|NT_167246.1 | 2 | 2 | Remapped | NT_167246.1 |
| NT_167247.1 | Chr6|NT_167247.1 | 2 | 2 | Remapped | NT_167247.1 |
| NT_167249.1 | Chr6|NT_167249.1 | 1 | 1 | Remapped | NT_167249.1 |
| NW_004070866.1 | Chr6|NW_004070866.1 | 2 | 2 | Remapped | NW_004070866.1 |
| NW_003315922.2 | Chr7|NW_003315922.2 | 1 | 1 | Remapped | NW_003315922.2 |
| NW_003571040.1 | Chr7|NW_003571040.1 | 5 | 5 | Remapped | NW_003571040.1 |
| NW_003871064.1 | Chr7|NW_003871064.1 | 1 | 1 | Remapped | NW_003871064.1 |
| NW_003315923.1 | Chr8|NW_003315923.1 | 2 | 2 | Remapped | NW_003315923.1 |
| NW_003571042.1 | Chr8|NW_003571042.1 | 1 | 1 | Remapped | NW_003571042.1 |
| NW_004775431.1 | Chr8|NW_004775431.1 | 3 | 3 | Remapped | NW_004775431.1 |
| NW_003315934.1 | Chr10|NW_003315934.1 | 1 | 1 | Remapped | NW_003315934.1 |
| NW_003871068.1 | Chr10|NW_003871068.1 | 2 | 2 | Remapped | NW_003871068.1 |
| NW_003871071.1 | Chr10|NW_003871071.1 | 1 | 1 | Remapped | NW_003871071.1 |
| NW_003315940.1 | Chr12|NW_003315940.1 | 1 | 1 | Remapped | NW_003315940.1 |
| NW_004166863.1 | Chr14|NW_004166863.1 | 2 | 2 | Remapped | NW_004166863.1 |
| NW_003315947.1 | Chr17|NW_003315947.1 | 1 | 1 | Remapped | NW_003315947.1 |
| NW_003315953.1 | Chr17|NW_003315953.1 | 1 | 1 | Remapped | NW_003315953.1 |
| NW_003871092.1 | Chr17|NW_003871092.1 | 1 | 1 | Remapped | NW_003871092.1 |
| NW_003871093.1 | Chr17|NW_003871093.1 | 1 | 1 | Remapped | NW_003871093.1 |
| NW_004070872.2 | Chr17|NW_004070872.2 | 5 | 5 | Remapped | NW_004070872.2 |
| NW_003315956.1 | Chr18|NW_003315956.1 | 2 | 2 | Remapped | NW_003315956.1 |
| NW_003315964.2 | Chr19|NW_003315964.2 | 1 | 1 | Remapped | NW_003315964.2 |
| NW_003571053.2 | Chr19|NW_003571053.2 | 1 | 1 | Remapped | NW_003571053.2 |
| NW_004166865.1 | Chr19|NW_004166865.1 | 1 | 1 | Remapped | NW_004166865.1 |
| NW_003315968.1 | Chr21|NW_003315968.1 | 1 | 1 | Remapped | NW_003315968.1 |
| NW_003871103.3 | ChrX|NW_003871103.3 | 4 | 4 | Remapped | NW_003871103.3 |
| NW_004070877.1 | ChrX|NW_004070877.1 | 2 | 2 | Remapped | NW_004070877.1 |
| NW_004070879.1 | ChrX|NW_004070879.1 | 1 | 1 | Remapped | NW_004070879.1 |
| NW_004070882.1 | ChrX|NW_004070882.1 | 1 | 1 | Remapped | NW_004070882.1 |
| NW_004070883.1 | ChrX|NW_004070883.1 | 2 | 2 | Remapped | NW_004070883.1 |
| NW_004070885.1 | ChrX|NW_004070885.1 | 2 | 2 | Remapped | NW_004070885.1 |
| NW_004070889.1 | ChrX|NW_004070889.1 | 2 | 2 | Remapped | NW_004070889.1 |
| NW_004070890.2 | ChrX|NW_004070890.2 | 7 | 7 | Remapped | NW_004070890.2 |
| NW_004166866.1 | ChrX|NW_004166866.1 | 1 | 1 | Remapped | NW_004166866.1 |
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.9 | Chr1 | 96 | 96 | Submitted | NC_000001.9 |
| NC_000002.10 | Chr2 | 99 | 99 | Submitted | NC_000002.10 |
| NC_000003.10 | Chr3 | 77 | 77 | Submitted | NC_000003.10 |
| NC_000004.10 | Chr4 | 79 | 79 | Submitted | NC_000004.10 |
| NC_000005.8 | Chr5 | 59 | 59 | Submitted | NC_000005.8 |
| NC_000006.10 | Chr6 | 77 | 77 | Submitted | NC_000006.10 |
| NC_000007.12 | Chr7 | 69 | 69 | Submitted | NC_000007.12 |
| NC_000008.9 | Chr8 | 71 | 71 | Submitted | NC_000008.9 |
| NC_000009.10 | Chr9 | 39 | 39 | Submitted | NC_000009.10 |
| NC_000010.9 | Chr10 | 42 | 42 | Submitted | NC_000010.9 |
| NC_000011.8 | Chr11 | 61 | 61 | Submitted | NC_000011.8 |
| NC_000012.10 | Chr12 | 54 | 54 | Submitted | NC_000012.10 |
| NC_000013.9 | Chr13 | 29 | 29 | Submitted | NC_000013.9 |
| NC_000014.7 | Chr14 | 35 | 35 | Submitted | NC_000014.7 |
| NC_000015.8 | Chr15 | 34 | 34 | Submitted | NC_000015.8 |
| NC_000016.8 | Chr16 | 33 | 33 | Submitted | NC_000016.8 |
| NC_000017.9 | Chr17 | 33 | 33 | Submitted | NC_000017.9 |
| NC_000018.8 | Chr18 | 28 | 28 | Submitted | NC_000018.8 |
| NC_000019.8 | Chr19 | 29 | 29 | Submitted | NC_000019.8 |
| NC_000020.9 | Chr20 | 26 | 26 | Submitted | NC_000020.9 |
| NC_000021.7 | Chr21 | 14 | 14 | Submitted | NC_000021.7 |
| NC_000022.9 | Chr22 | 24 | 24 | Submitted | NC_000022.9 |
| NC_000023.9 | ChrX | 58 | 58 | Submitted | NC_000023.9 |
| NC_000024.8 | ChrY | 1 | 1 | Submitted | NC_000024.8 |
| Variant Region remap status | Variant Call remap status | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
| NC_000001.9 | Chr1 | 96 | 92 | 0 | 0 | 0 | 4 | 96 | 92 | 0 | 0 | 0 | 4 |
| NC_000002.10 | Chr2 | 99 | 99 | 0 | 0 | 0 | 0 | 99 | 99 | 0 | 0 | 0 | 0 |
| NC_000003.10 | Chr3 | 77 | 72 | 3 | 0 | 0 | 2 | 77 | 72 | 3 | 0 | 0 | 2 |
| NC_000004.10 | Chr4 | 79 | 77 | 0 | 0 | 0 | 2 | 79 | 77 | 0 | 0 | 0 | 2 |
| NC_000005.8 | Chr5 | 59 | 57 | 0 | 0 | 1 | 1 | 59 | 57 | 0 | 0 | 1 | 1 |
| NC_000006.10 | Chr6 | 77 | 72 | 0 | 0 | 0 | 5 | 77 | 72 | 0 | 0 | 0 | 5 |
| NC_000007.12 | Chr7 | 69 | 61 | 3 | 0 | 0 | 5 | 69 | 61 | 3 | 0 | 0 | 5 |
| NC_000008.9 | Chr8 | 71 | 64 | 0 | 0 | 0 | 7 | 71 | 64 | 0 | 0 | 0 | 7 |
| NC_000009.10 | Chr9 | 39 | 39 | 0 | 0 | 0 | 0 | 39 | 39 | 0 | 0 | 0 | 0 |
| NC_000010.9 | Chr10 | 42 | 38 | 0 | 0 | 0 | 4 | 42 | 38 | 0 | 0 | 0 | 4 |
| NC_000011.8 | Chr11 | 61 | 61 | 0 | 0 | 0 | 0 | 61 | 61 | 0 | 0 | 0 | 0 |
| NC_000012.10 | Chr12 | 54 | 53 | 0 | 0 | 0 | 1 | 54 | 53 | 0 | 0 | 0 | 1 |
| NC_000013.9 | Chr13 | 29 | 29 | 0 | 0 | 0 | 0 | 29 | 29 | 0 | 0 | 0 | 0 |
| NC_000014.7 | Chr14 | 35 | 33 | 0 | 0 | 0 | 2 | 35 | 33 | 0 | 0 | 0 | 2 |
| NC_000015.8 | Chr15 | 34 | 33 | 0 | 0 | 1 | 0 | 34 | 33 | 0 | 0 | 1 | 0 |
| NC_000016.8 | Chr16 | 33 | 33 | 0 | 0 | 0 | 0 | 33 | 33 | 0 | 0 | 0 | 0 |
| NC_000017.9 | Chr17 | 33 | 29 | 0 | 1 | 0 | 3 | 33 | 29 | 0 | 1 | 0 | 3 |
| NC_000018.8 | Chr18 | 28 | 26 | 0 | 0 | 0 | 2 | 28 | 26 | 0 | 0 | 0 | 2 |
| NC_000019.8 | Chr19 | 29 | 28 | 0 | 0 | 0 | 1 | 29 | 28 | 0 | 0 | 0 | 1 |
| NC_000020.9 | Chr20 | 26 | 26 | 0 | 0 | 0 | 0 | 26 | 26 | 0 | 0 | 0 | 0 |
| NC_000021.7 | Chr21 | 14 | 13 | 0 | 0 | 0 | 1 | 14 | 13 | 0 | 0 | 0 | 1 |
| NC_000022.9 | Chr22 | 24 | 24 | 0 | 0 | 0 | 0 | 24 | 24 | 0 | 0 | 0 | 0 |
| NC_000023.9 | ChrX | 58 | 35 | 2 | 0 | 0 | 21 | 58 | 35 | 2 | 0 | 0 | 21 |
| NC_000024.8 | ChrY | 1 | 1 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 |
| Variant Region remap status | Variant Call remap status | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
| NC_000001.9 | Chr1 | 96 | 87 | 1 | 0 | 3 | 5 | 96 | 87 | 1 | 0 | 3 | 5 |
| NC_000002.10 | Chr2 | 99 | 88 | 3 | 1 | 2 | 5 | 99 | 88 | 3 | 1 | 2 | 5 |
| NC_000003.10 | Chr3 | 77 | 71 | 3 | 0 | 0 | 3 | 77 | 71 | 3 | 0 | 0 | 3 |
| NC_000004.10 | Chr4 | 79 | 71 | 3 | 0 | 1 | 4 | 79 | 71 | 3 | 0 | 1 | 4 |
| NC_000005.8 | Chr5 | 59 | 55 | 1 | 0 | 1 | 2 | 59 | 55 | 1 | 0 | 1 | 2 |
| NC_000006.10 | Chr6 | 77 | 69 | 0 | 2 | 1 | 5 | 77 | 69 | 0 | 2 | 1 | 5 |
| NC_000007.12 | Chr7 | 69 | 53 | 4 | 1 | 2 | 9 | 69 | 53 | 4 | 1 | 2 | 9 |
| NC_000008.9 | Chr8 | 71 | 57 | 0 | 3 | 2 | 9 | 71 | 57 | 0 | 3 | 2 | 9 |
| NC_000009.10 | Chr9 | 39 | 36 | 0 | 0 | 2 | 1 | 39 | 36 | 0 | 0 | 2 | 1 |
| NC_000010.9 | Chr10 | 42 | 40 | 0 | 0 | 0 | 2 | 42 | 40 | 0 | 0 | 0 | 2 |
| NC_000011.8 | Chr11 | 61 | 55 | 1 | 0 | 0 | 5 | 61 | 55 | 1 | 0 | 0 | 5 |
| NC_000012.10 | Chr12 | 54 | 49 | 1 | 0 | 0 | 4 | 54 | 49 | 1 | 0 | 0 | 4 |
| NC_000013.9 | Chr13 | 29 | 27 | 0 | 0 | 0 | 2 | 29 | 27 | 0 | 0 | 0 | 2 |
| NC_000014.7 | Chr14 | 35 | 31 | 1 | 0 | 1 | 2 | 35 | 31 | 1 | 0 | 1 | 2 |
| NC_000015.8 | Chr15 | 34 | 30 | 0 | 0 | 2 | 2 | 34 | 30 | 0 | 0 | 2 | 2 |
| NC_000016.8 | Chr16 | 33 | 30 | 0 | 0 | 0 | 3 | 33 | 30 | 0 | 0 | 0 | 3 |
| NC_000017.9 | Chr17 | 33 | 25 | 0 | 1 | 1 | 6 | 33 | 25 | 0 | 1 | 1 | 6 |
| NC_000018.8 | Chr18 | 28 | 21 | 0 | 0 | 0 | 7 | 28 | 21 | 0 | 0 | 0 | 7 |
| NC_000019.8 | Chr19 | 29 | 22 | 0 | 0 | 1 | 6 | 29 | 22 | 0 | 0 | 1 | 6 |
| NC_000020.9 | Chr20 | 26 | 23 | 0 | 0 | 2 | 1 | 26 | 23 | 0 | 0 | 2 | 1 |
| NC_000021.7 | Chr21 | 14 | 10 | 0 | 0 | 0 | 4 | 14 | 10 | 0 | 0 | 0 | 4 |
| NC_000022.9 | Chr22 | 24 | 16 | 2 | 0 | 1 | 5 | 24 | 16 | 2 | 0 | 1 | 5 |
| NC_000023.9 | ChrX | 58 | 39 | 17 | 2 | 0 | 0 | 58 | 39 | 17 | 2 | 0 | 0 |
| NC_000024.8 | ChrY | 1 | 1 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 |
Samplesets
Number of Samplesets: 1
- Name:
- Fosmid9
- Description:
- 8 HapMap and 1 PDR individual
- Size:
- 9
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- None reported
| Sample ID | Cell Type | Subject ID | Sex | Ethnicity | Subject Age | Subject Phenotype |
|---|---|---|---|---|---|---|
| SAMN00001588 | B-Lymphocyte | NA18517 | Female | YORUBA | Not reported | |
| NA12156 | B-Lymphocyte | NA12156 | Female | UTAH/MORMON | 81 Years | Not reported |
| NA18507 | B-Lymphocyte | NA18507 | Male | YORUBA | Not reported | |
| SAMN00000376 | B-Lymphocyte | NA15510 | Not reported | |||
| NA12878 | B-Lymphocyte | NA12878 | Female | UTAH/MORMON | Not reported | |
| NA19129 | B-Lymphocyte | NA19129 | Female | YORUBA | Not reported | |
| NA18956 | B-Lymphocyte | NA18956 | Female | JAPANESE | Not reported | |
| NA19240 | B-Lymphocyte | NA19240 | Female | YORUBA | Not reported | |
| NA18555 | B-Lymphocyte | NA18555 | Female | HAN CHINESE | Not reported |