nstd29 (Locke et al. 2006)
- Organism:
- Human
- Study Type:
- Control Set
- Submitter:
- Devin Locke
- Submitter URL:
- http://humanparalogy.gs.washington.edu/structuralvariation/general/download.html
- Description:
- In an attempt to assess the heritability and LD of copy-number polymorphisms (CNPs) in duplication-rich regions of the genome, we profiled copy-number variation in 130 putative “rearrangement hotspot regions” among 269 individuals of European, Yoruba, Chinese, and Japanese ancestry analyzed by the International HapMap Consortium. See Variant Summary counts for nstd29 in dbVar Variant Summary.
- Publication(s):
- Locke et al. 2006
Detailed Information: Download 388 Variant Regions, Download 4656 Variant Calls, Download Both, FTP
Variant Summary
Assembly used for analysis:
Remapped: GRCh38.p12 (hg38)
Remapped: GRCh37.p13 (hg19)
Submitted: NCBI34 (hg16)
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.11 | Chr1 | 22 | 375 | Remapped | NC_000001.11 |
| NC_000002.12 | Chr2 | 14 | 53 | Remapped | NC_000002.12 |
| NC_000003.12 | Chr3 | 7 | 107 | Remapped | NC_000003.12 |
| NC_000004.12 | Chr4 | 19 | 190 | Remapped | NC_000004.12 |
| NC_000005.10 | Chr5 | 22 | 459 | Remapped | NC_000005.10 |
| NC_000006.12 | Chr6 | 6 | 66 | Remapped | NC_000006.12 |
| NC_000007.14 | Chr7 | 27 | 253 | Remapped | NC_000007.14 |
| NC_000008.11 | Chr8 | 16 | 314 | Remapped | NC_000008.11 |
| NC_000009.12 | Chr9 | 32 | 138 | Remapped | NC_000009.12 |
| NC_000010.11 | Chr10 | 12 | 93 | Remapped | NC_000010.11 |
| NC_000011.10 | Chr11 | 15 | 82 | Remapped | NC_000011.10 |
| NC_000012.12 | Chr12 | 6 | 13 | Remapped | NC_000012.12 |
| NC_000013.11 | Chr13 | 3 | 4 | Remapped | NC_000013.11 |
| NC_000014.9 | Chr14 | 5 | 179 | Remapped | NC_000014.9 |
| NC_000015.10 | Chr15 | 33 | 540 | Remapped | NC_000015.10 |
| NC_000016.10 | Chr16 | 19 | 122 | Remapped | NC_000016.10 |
| NC_000017.11 | Chr17 | 31 | 384 | Remapped | NC_000017.11 |
| NC_000018.10 | Chr18 | 3 | 5 | Remapped | NC_000018.10 |
| NC_000019.10 | Chr19 | 17 | 240 | Remapped | NC_000019.10 |
| NC_000020.11 | Chr20 | 4 | 17 | Remapped | NC_000020.11 |
| NC_000021.9 | Chr21 | 5 | 10 | Remapped | NC_000021.9 |
| NC_000022.11 | Chr22 | 20 | 469 | Remapped | NC_000022.11 |
| NC_000023.11 | ChrX | 17 | 163 | Remapped | NC_000023.11 |
| NC_000024.10 | ChrY | 15 | 58 | Remapped | NC_000024.10 |
| NT_187523.1 | Chr2|NT_187523.1 | 1 | 1 | Remapped | NT_187523.1 |
| NT_187525.1 | Chr2|NT_187525.1 | 1 | 1 | Remapped | NT_187525.1 |
| NT_187647.1 | Chr2|NT_187647.1 | 1 | 1 | Remapped | NT_187647.1 |
| NW_012132915.1 | Chr2|NW_012132915.1 | 1 | 9 | Remapped | NW_012132915.1 |
| NT_187678.1 | Chr3|NT_187678.1 | 1 | 39 | Remapped | NT_187678.1 |
| NT_187688.1 | Chr3|NT_187688.1 | 1 | 39 | Remapped | NT_187688.1 |
| NT_187689.1 | Chr3|NT_187689.1 | 1 | 39 | Remapped | NT_187689.1 |
| NT_187690.1 | Chr3|NT_187690.1 | 1 | 39 | Remapped | NT_187690.1 |
| NT_187691.1 | Chr3|NT_187691.1 | 1 | 39 | Remapped | NT_187691.1 |
| NT_187532.1 | Chr3|NT_187532.1 | 1 | 39 | Remapped | NT_187532.1 |
| NT_187649.1 | Chr3|NT_187649.1 | 1 | 39 | Remapped | NT_187649.1 |
| NT_187679.1 | Chr4|NT_187679.1 | 1 | 1 | Remapped | NT_187679.1 |
| NT_187548.1 | Chr5|NT_187548.1 | 1 | 5 | Remapped | NT_187548.1 |
| NW_003315917.2 | Chr5|NW_003315917.2 | 2 | 174 | Remapped | NW_003315917.2 |
| NW_016107298.1 | Chr5|NW_016107298.1 | 1 | 1 | Remapped | NW_016107298.1 |
| NW_018654714.1 | Chr7|NW_018654714.1 | 3 | 59 | Remapped | NW_018654714.1 |
| NT_187565.1 | Chr8|NT_187565.1 | 1 | 20 | Remapped | NT_187565.1 |
| NT_187570.1 | Chr8|NT_187570.1 | 1 | 50 | Remapped | NT_187570.1 |
| NT_187576.1 | Chr8|NT_187576.1 | 2 | 4 | Remapped | NT_187576.1 |
| NT_187654.1 | Chr8|NT_187654.1 | 1 | 20 | Remapped | NT_187654.1 |
| NW_018654717.1 | Chr8|NW_018654717.1 | 2 | 30 | Remapped | NW_018654717.1 |
| NW_019805496.1 | Chr11|NW_019805496.1 | 1 | 1 | Remapped | NW_019805496.1 |
| NW_011332699.1 | Chr13|NW_011332699.1 | 1 | 2 | Remapped | NW_011332699.1 |
| NT_187600.1 | Chr14|NT_187600.1 | 3 | 118 | Remapped | NT_187600.1 |
| NT_187659.1 | Chr15|NT_187659.1 | 1 | 2 | Remapped | NT_187659.1 |
| NT_187660.1 | Chr15|NT_187660.1 | 8 | 110 | Remapped | NT_187660.1 |
| NT_187603.1 | Chr15|NT_187603.1 | 2 | 3 | Remapped | NT_187603.1 |
| NT_187606.1 | Chr15|NT_187606.1 | 1 | 3 | Remapped | NT_187606.1 |
| NW_003315943.1 | Chr15|NW_003315943.1 | 1 | 68 | Remapped | NW_003315943.1 |
| NW_011332701.1 | Chr15|NW_011332701.1 | 6 | 36 | Remapped | NW_011332701.1 |
| NT_187383.1 | Chr16|NT_187383.1 | 2 | 16 | Remapped | NT_187383.1 |
| NT_187607.1 | Chr16|NT_187607.1 | 3 | 9 | Remapped | NT_187607.1 |
| NW_017852933.1 | Chr16|NW_017852933.1 | 4 | 15 | Remapped | NW_017852933.1 |
| NT_187663.1 | Chr17|NT_187663.1 | 2 | 12 | Remapped | NT_187663.1 |
| NT_167251.2 | Chr17|NT_167251.2 | 2 | 46 | Remapped | NT_167251.2 |
| NT_187614.1 | Chr17|NT_187614.1 | 3 | 18 | Remapped | NT_187614.1 |
| NW_003315952.3 | Chr17|NW_003315952.3 | 1 | 1 | Remapped | NW_003315952.3 |
| NW_017363817.1 | Chr17|NW_017363817.1 | 1 | 1 | Remapped | NW_017363817.1 |
| NW_017363819.1 | Chr17|NW_017363819.1 | 1 | 33 | Remapped | NW_017363819.1 |
| NT_187693.1 | Chr19|NT_187693.1 | 1 | 13 | Remapped | NT_187693.1 |
| NW_003315965.1 | Chr19|NW_003315965.1 | 1 | 1 | Remapped | NW_003315965.1 |
| NT_187629.1 | Chr22|NT_187629.1 | 1 | 6 | Remapped | NT_187629.1 |
| NT_187632.1 | Chr22|NT_187632.1 | 1 | 1 | Remapped | NT_187632.1 |
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.10 | Chr1 | 25 | 415 | Remapped | NC_000001.10 |
| NC_000002.11 | Chr2 | 14 | 53 | Remapped | NC_000002.11 |
| NC_000003.11 | Chr3 | 7 | 107 | Remapped | NC_000003.11 |
| NC_000004.11 | Chr4 | 19 | 190 | Remapped | NC_000004.11 |
| NC_000005.9 | Chr5 | 22 | 459 | Remapped | NC_000005.9 |
| NC_000006.11 | Chr6 | 6 | 66 | Remapped | NC_000006.11 |
| NC_000007.13 | Chr7 | 27 | 253 | Remapped | NC_000007.13 |
| NC_000008.10 | Chr8 | 17 | 317 | Remapped | NC_000008.10 |
| NC_000009.11 | Chr9 | 32 | 115 | Remapped | NC_000009.11 |
| NC_000010.10 | Chr10 | 13 | 107 | Remapped | NC_000010.10 |
| NC_000011.9 | Chr11 | 15 | 82 | Remapped | NC_000011.9 |
| NC_000012.11 | Chr12 | 6 | 13 | Remapped | NC_000012.11 |
| NC_000013.10 | Chr13 | 3 | 4 | Remapped | NC_000013.10 |
| NC_000014.8 | Chr14 | 5 | 179 | Remapped | NC_000014.8 |
| NC_000015.9 | Chr15 | 33 | 436 | Remapped | NC_000015.9 |
| NC_000016.9 | Chr16 | 22 | 139 | Remapped | NC_000016.9 |
| NC_000017.10 | Chr17 | 30 | 383 | Remapped | NC_000017.10 |
| NC_000018.9 | Chr18 | 3 | 5 | Remapped | NC_000018.9 |
| NC_000019.9 | Chr19 | 17 | 240 | Remapped | NC_000019.9 |
| NC_000020.10 | Chr20 | 4 | 17 | Remapped | NC_000020.10 |
| NC_000021.8 | Chr21 | 4 | 8 | Remapped | NC_000021.8 |
| NC_000022.10 | Chr22 | 20 | 469 | Remapped | NC_000022.10 |
| NC_000023.10 | ChrX | 17 | 163 | Remapped | NC_000023.10 |
| NC_000024.9 | ChrY | 15 | 58 | Remapped | NC_000024.9 |
| NW_003871055.3 | Chr1|NW_003871055.3 | 2 | 26 | Remapped | NW_003871055.3 |
| NW_004775427.1 | Chr4|NW_004775427.1 | 1 | 5 | Remapped | NW_004775427.1 |
| NW_003315917.2 | Chr5|NW_003315917.2 | 2 | 174 | Remapped | NW_003315917.2 |
| NW_003871064.1 | Chr7|NW_003871064.1 | 4 | 9 | Remapped | NW_003871064.1 |
| NW_004775430.1 | Chr7|NW_004775430.1 | 1 | 4 | Remapped | NW_004775430.1 |
| NW_003571042.1 | Chr8|NW_003571042.1 | 2 | 4 | Remapped | NW_003571042.1 |
| NW_003871068.1 | Chr10|NW_003871068.1 | 2 | 16 | Remapped | NW_003871068.1 |
| NW_004166863.1 | Chr14|NW_004166863.1 | 2 | 83 | Remapped | NW_004166863.1 |
| NT_167251.1 | Chr17|NT_167251.1 | 2 | 46 | Remapped | NT_167251.1 |
| NW_003315948.2 | Chr17|NW_003315948.2 | 1 | 6 | Remapped | NW_003315948.2 |
| NW_003315949.1 | Chr17|NW_003315949.1 | 2 | 12 | Remapped | NW_003315949.1 |
| NW_003871086.1 | Chr17|NW_003871086.1 | 1 | 23 | Remapped | NW_003871086.1 |
| NW_004070872.2 | Chr17|NW_004070872.2 | 1 | 1 | Remapped | NW_004070872.2 |
| NW_003315965.1 | Chr19|NW_003315965.1 | 1 | 1 | Remapped | NW_003315965.1 |
| NW_003871094.1 | Chr19|NW_003871094.1 | 1 | 53 | Remapped | NW_003871094.1 |
| NW_004166865.1 | Chr19|NW_004166865.1 | 1 | 13 | Remapped | NW_004166865.1 |
| NW_003871103.3 | ChrX|NW_003871103.3 | 1 | 1 | Remapped | NW_003871103.3 |
| NW_004070880.2 | ChrX|NW_004070880.2 | 3 | 14 | Remapped | NW_004070880.2 |
| NW_004070881.1 | ChrX|NW_004070881.1 | 1 | 3 | Remapped | NW_004070881.1 |
| NW_004070885.1 | ChrX|NW_004070885.1 | 1 | 1 | Remapped | NW_004070885.1 |
| NW_004070887.1 | ChrX|NW_004070887.1 | 2 | 3 | Remapped | NW_004070887.1 |
| NW_004070888.1 | ChrX|NW_004070888.1 | 1 | 5 | Remapped | NW_004070888.1 |
| NW_004070890.2 | ChrX|NW_004070890.2 | 1 | 1 | Remapped | NW_004070890.2 |
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.7 | Chr1 | 26 | 423 | Submitted | NC_000001.7 |
| GPC_000000200.1 | Chr2 | 14 | 53 | Submitted | GPC_000000200.1 |
| NC_000003.8 | Chr3 | 7 | 107 | Submitted | NC_000003.8 |
| NC_000004.8 | Chr4 | 19 | 190 | Submitted | NC_000004.8 |
| NC_000005.7 | Chr5 | 24 | 633 | Submitted | NC_000005.7 |
| NC_000006.8 | Chr6 | 6 | 66 | Submitted | NC_000006.8 |
| NC_000007.10 | Chr7 | 28 | 254 | Submitted | NC_000007.10 |
| NC_000008.8 | Chr8 | 17 | 317 | Submitted | NC_000008.8 |
| GPC_000000201.1 | Chr9 | 36 | 146 | Submitted | GPC_000000201.1 |
| NC_000010.7 | Chr10 | 13 | 107 | Submitted | NC_000010.7 |
| NC_000011.7 | Chr11 | 15 | 82 | Submitted | NC_000011.7 |
| NC_000012.8 | Chr12 | 6 | 13 | Submitted | NC_000012.8 |
| NC_000013.8 | Chr13 | 3 | 4 | Submitted | NC_000013.8 |
| NC_000014.6 | Chr14 | 6 | 213 | Submitted | NC_000014.6 |
| NC_000015.7 | Chr15 | 34 | 543 | Submitted | NC_000015.7 |
| NC_000016.7 | Chr16 | 21 | 138 | Submitted | NC_000016.7 |
| NC_000017.8 | Chr17 | 32 | 394 | Submitted | NC_000017.8 |
| NC_000018.7 | Chr18 | 3 | 5 | Submitted | NC_000018.7 |
| NC_000019.8 | Chr19 | 18 | 253 | Submitted | NC_000019.8 |
| NC_000020.8 | Chr20 | 4 | 17 | Submitted | NC_000020.8 |
| NC_000021.6 | Chr21 | 4 | 8 | Submitted | NC_000021.6 |
| NC_000022.7 | Chr22 | 20 | 469 | Submitted | NC_000022.7 |
| NC_000023.7 | ChrX | 17 | 163 | Submitted | NC_000023.7 |
| NC_000024.6 | ChrY | 15 | 58 | Submitted | NC_000024.6 |
| Variant Region remap status | Variant Call remap status | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
| GPC_000000200.1 | Chr2 | 14 | 11 | 1 | 2 | 0 | 0 | 53 | 21 | 30 | 2 | 0 | 0 |
| GPC_000000201.1 | Chr9 | 36 | 19 | 6 | 7 | 4 | 0 | 146 | 83 | 13 | 19 | 31 | 0 |
| NC_000001.7 | Chr1 | 26 | 18 | 2 | 3 | 1 | 2 | 423 | 344 | 3 | 42 | 8 | 26 |
| NC_000003.8 | Chr3 | 7 | 6 | 1 | 0 | 0 | 0 | 107 | 68 | 39 | 0 | 0 | 0 |
| NC_000004.8 | Chr4 | 19 | 16 | 1 | 1 | 0 | 1 | 190 | 177 | 1 | 7 | 0 | 5 |
| NC_000005.7 | Chr5 | 24 | 22 | 2 | 0 | 0 | 0 | 633 | 631 | 2 | 0 | 0 | 0 |
| NC_000006.8 | Chr6 | 6 | 6 | 0 | 0 | 0 | 0 | 66 | 66 | 0 | 0 | 0 | 0 |
| NC_000007.10 | Chr7 | 28 | 17 | 3 | 3 | 0 | 5 | 254 | 169 | 27 | 45 | 0 | 13 |
| NC_000008.8 | Chr8 | 17 | 14 | 0 | 1 | 0 | 2 | 317 | 291 | 0 | 22 | 0 | 4 |
| NC_000010.7 | Chr10 | 13 | 9 | 1 | 1 | 0 | 2 | 107 | 64 | 13 | 14 | 0 | 16 |
| NC_000011.7 | Chr11 | 15 | 14 | 0 | 1 | 0 | 0 | 82 | 81 | 0 | 1 | 0 | 0 |
| NC_000012.8 | Chr12 | 6 | 6 | 0 | 0 | 0 | 0 | 13 | 13 | 0 | 0 | 0 | 0 |
| NC_000013.8 | Chr13 | 3 | 3 | 0 | 0 | 0 | 0 | 4 | 4 | 0 | 0 | 0 | 0 |
| NC_000014.6 | Chr14 | 6 | 3 | 0 | 0 | 1 | 2 | 213 | 96 | 0 | 0 | 34 | 83 |
| NC_000015.7 | Chr15 | 34 | 26 | 3 | 4 | 1 | 0 | 543 | 252 | 105 | 79 | 107 | 0 |
| NC_000016.7 | Chr16 | 21 | 12 | 6 | 2 | 0 | 1 | 138 | 99 | 22 | 3 | 0 | 14 |
| NC_000017.8 | Chr17 | 32 | 20 | 2 | 3 | 1 | 6 | 394 | 181 | 59 | 57 | 10 | 87 |
| NC_000018.7 | Chr18 | 3 | 3 | 0 | 0 | 0 | 0 | 5 | 5 | 0 | 0 | 0 | 0 |
| NC_000019.8 | Chr19 | 18 | 15 | 1 | 0 | 0 | 2 | 253 | 186 | 13 | 0 | 0 | 54 |
| NC_000020.8 | Chr20 | 4 | 4 | 0 | 0 | 0 | 0 | 17 | 17 | 0 | 0 | 0 | 0 |
| NC_000021.6 | Chr21 | 4 | 3 | 1 | 0 | 0 | 0 | 8 | 6 | 2 | 0 | 0 | 0 |
| NC_000022.7 | Chr22 | 20 | 19 | 0 | 1 | 0 | 0 | 469 | 429 | 0 | 40 | 0 | 0 |
| NC_000023.7 | ChrX | 17 | 6 | 0 | 1 | 0 | 10 | 163 | 49 | 0 | 86 | 0 | 28 |
| NC_000024.6 | ChrY | 15 | 12 | 0 | 3 | 0 | 0 | 58 | 43 | 0 | 15 | 0 | 0 |
| Variant Region remap status | Variant Call remap status | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
| GPC_000000200.1 | Chr2 | 14 | 9 | 1 | 1 | 0 | 3 | 53 | 11 | 30 | 1 | 0 | 11 |
| GPC_000000201.1 | Chr9 | 36 | 16 | 8 | 9 | 3 | 0 | 146 | 71 | 17 | 52 | 6 | 0 |
| NC_000001.7 | Chr1 | 26 | 14 | 6 | 2 | 4 | 0 | 423 | 327 | 8 | 40 | 48 | 0 |
| NC_000003.8 | Chr3 | 7 | 6 | 0 | 0 | 0 | 1 | 107 | 68 | 0 | 0 | 0 | 39 |
| NC_000004.8 | Chr4 | 19 | 14 | 3 | 1 | 0 | 1 | 190 | 138 | 44 | 7 | 0 | 1 |
| NC_000005.7 | Chr5 | 24 | 19 | 3 | 0 | 0 | 2 | 633 | 492 | 135 | 0 | 0 | 6 |
| NC_000006.8 | Chr6 | 6 | 6 | 0 | 0 | 0 | 0 | 66 | 66 | 0 | 0 | 0 | 0 |
| NC_000007.10 | Chr7 | 28 | 14 | 10 | 0 | 1 | 3 | 254 | 155 | 39 | 0 | 1 | 59 |
| NC_000008.8 | Chr8 | 17 | 10 | 1 | 1 | 0 | 5 | 317 | 193 | 1 | 22 | 0 | 101 |
| NC_000010.7 | Chr10 | 13 | 10 | 2 | 0 | 1 | 0 | 107 | 75 | 18 | 0 | 14 | 0 |
| NC_000011.7 | Chr11 | 15 | 12 | 2 | 0 | 0 | 1 | 82 | 54 | 27 | 0 | 0 | 1 |
| NC_000012.8 | Chr12 | 6 | 6 | 0 | 0 | 0 | 0 | 13 | 13 | 0 | 0 | 0 | 0 |
| NC_000013.8 | Chr13 | 3 | 3 | 0 | 0 | 0 | 0 | 4 | 4 | 0 | 0 | 0 | 0 |
| NC_000014.6 | Chr14 | 6 | 1 | 1 | 0 | 1 | 3 | 213 | 19 | 42 | 0 | 34 | 118 |
| NC_000015.7 | Chr15 | 34 | 16 | 5 | 3 | 0 | 10 | 543 | 206 | 107 | 117 | 0 | 113 |
| NC_000016.7 | Chr16 | 21 | 6 | 6 | 2 | 0 | 7 | 138 | 89 | 22 | 3 | 0 | 24 |
| NC_000017.8 | Chr17 | 32 | 18 | 2 | 2 | 1 | 9 | 394 | 115 | 59 | 106 | 10 | 104 |
| NC_000018.7 | Chr18 | 3 | 2 | 1 | 0 | 0 | 0 | 5 | 4 | 1 | 0 | 0 | 0 |
| NC_000019.8 | Chr19 | 18 | 12 | 5 | 0 | 0 | 1 | 253 | 72 | 180 | 0 | 0 | 1 |
| NC_000020.8 | Chr20 | 4 | 4 | 0 | 0 | 0 | 0 | 17 | 17 | 0 | 0 | 0 | 0 |
| NC_000021.6 | Chr21 | 4 | 3 | 0 | 0 | 0 | 1 | 8 | 6 | 0 | 0 | 0 | 2 |
| NC_000022.7 | Chr22 | 20 | 11 | 5 | 2 | 0 | 2 | 469 | 303 | 151 | 8 | 0 | 7 |
| NC_000023.7 | ChrX | 17 | 6 | 9 | 2 | 0 | 0 | 163 | 49 | 27 | 87 | 0 | 0 |
| NC_000024.6 | ChrY | 15 | 13 | 0 | 2 | 0 | 0 | 58 | 48 | 0 | 10 | 0 | 0 |
Samplesets
Number of Samplesets: 4
- Sampleset ID:
- 1
- Name:
- CEU
- Description:
- Phase 1 HapMap
- Size:
- 88
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- None reported
| Sample ID | Cell Type | Subject ID | Sex | Ethnicity | Subject Age | Subject Phenotype |
|---|---|---|---|---|---|---|
| NA12812 | B-Lymphocyte | NA12812 | Male | Caucasian | Not reported | |
| NA07348 | B-Lymphocyte | NA07348 | Female | Caucasian | 45 Years | Not reported |
| NA11993 | B-Lymphocyte | NA11993 | Female | Caucasian | 80 Years | Not reported |
| NA12813 | B-Lymphocyte | NA12813 | Female | Caucasian | Not reported | |
| NA12761 | B-Lymphocyte | NA12761 | Female | Caucasian | Not reported | |
| NA12154 | B-Lymphocyte | NA12154 | Male | Caucasian | 92 Years | Not reported |
| NA12057 | B-Lymphocyte | NA12057 | Female | Caucasian | 75 Years | Not reported |
| NA10857 | B-Lymphocyte | NA10857 | Male | Caucasian | 47 Years | Not reported |
| NA11839 | B-Lymphocyte | NA11839 | Male | Caucasian | 67 Years | Not reported |
| NA12156 | B-Lymphocyte | NA12156 | Female | Caucasian | 81 Years | Not reported |
| NA11881 | B-Lymphocyte | NA11881 | Male | Caucasian | 62 Years | Not reported |
| NA11831 | B-Lymphocyte | NA11831 | Male | Caucasian | 73 Years | Not reported |
| NA06993 | B-Lymphocyte | NA06993 | Male | Caucasian | 74 Years | Not reported |
| NA10830 | B-Lymphocyte | NA10830 | Male | Caucasian | 66 Years | Not reported |
| NA10856 | B-Lymphocyte | NA10856 | Male | Caucasian | 46 Years | Not reported |
| NA07048 | B-Lymphocyte | NA07048 | Male | Caucasian | 43 Years | Not reported |
| NA12056 | B-Lymphocyte | NA12056 | Male | Caucasian | 79 Years | Not reported |
| NA12751 | B-Lymphocyte | NA12751 | Female | Caucasian | Not reported | |
| NA12155 | B-Lymphocyte | NA12155 | Male | Caucasian | 86 Years | Not reported |
| NA12146 | B-Lymphocyte | NA12146 | Male | Caucasian | 61 Years | Not reported |
| NA12872 | B-Lymphocyte | NA12872 | Male | Caucasian | Not reported | |
| NA12865 | B-Lymphocyte | NA12865 | Female | Caucasian | Not reported | |
| NA12249 | B-Lymphocyte | NA12249 | Female | Caucasian | 77 Years | Not reported |
| NA11830 | B-Lymphocyte | NA11830 | Female | Caucasian | 63 Years | Not reported |
| NA12892 | B-Lymphocyte | NA12892 | Female | Caucasian | Not reported | |
| NA12716 | B-Lymphocyte | NA12716 | Male | Caucasian | Not reported | |
| NA10859 | B-Lymphocyte | NA10859 | Female | Caucasian | 41 Years | Not reported |
| NA10838 | B-Lymphocyte | NA10838 | Male | Caucasian | 60 Years | Not reported |
| NA06991 | B-Lymphocyte | NA06991 | Female | Caucasian | 42 Years | Not reported |
| NA12760 | B-Lymphocyte | NA12760 | Male | Caucasian | Not reported | |
| NA12763 | B-Lymphocyte | NA12763 | Female | Caucasian | Not reported | |
| NA11995 | B-Lymphocyte | NA11995 | Female | Caucasian | 84 Years | Not reported |
| NA10831 | B-Lymphocyte | NA10831 | Female | Caucasian | 59 Years | Not reported |
| NA11829 | B-Lymphocyte | NA11829 | Male | Caucasian | 72 Years | Not reported |
| NA11992 | B-Lymphocyte | NA11992 | Male | Caucasian | 86 Years | Not reported |
| NA12815 | B-Lymphocyte | NA12815 | Female | Caucasian | Not reported | |
| NA12043 | B-Lymphocyte | NA12043 | Male | Caucasian | 74 Years | Not reported |
| NA12003 | B-Lymphocyte | NA12003 | Male | Caucasian | 97 Years | Not reported |
| NA07022 | B-Lymphocyte | NA07022 | Male | Caucasian | 63 Years | Not reported |
| NA10860 | B-Lymphocyte | NA10860 | Male | Caucasian | 50 Years | Not reported |
| NA06985 | B-Lymphocyte | NA06985 | Female | Caucasian | 69 Years | Not reported |
| NA12044 | B-Lymphocyte | NA12044 | Female | Caucasian | 70 Years | Not reported |
| NA12234 | B-Lymphocyte | NA12234 | Female | Caucasian | 74 Years | Not reported |
| NA12264 | B-Lymphocyte | NA12264 | Male | Caucasian | 72 Years | Not reported |
| NA12874 | B-Lymphocyte | NA12874 | Male | Caucasian | Not reported | |
| NA10851 | B-Lymphocyte | NA10851 | Male | Caucasian | 52 Years | Not reported |
| NA12145 | B-Lymphocyte | NA12145 | Female | Caucasian | 70 Years | Not reported |
| NA12752 | B-Lymphocyte | NA12752 | Male | Caucasian | Not reported | |
| NA07029 | B-Lymphocyte | NA07029 | Male | Caucasian | 47 Years | Not reported |
| NA12004 | B-Lymphocyte | NA12004 | Female | Caucasian | 92 Years | Not reported |
| NA07357 | B-Lymphocyte | NA07357 | Male | Caucasian | 69 Years | Not reported |
| NA06994 | B-Lymphocyte | NA06994 | Male | Caucasian | 68 Years | Not reported |
| NA12878 | B-Lymphocyte | NA12878 | Female | Caucasian | Not reported | |
| NA11840 | B-Lymphocyte | NA11840 | Female | Caucasian | 67 Years | Not reported |
| NA12864 | B-Lymphocyte | NA12864 | Male | Caucasian | Not reported | |
| NA07034 | B-Lymphocyte | NA07034 | Male | Caucasian | 71 Years | Not reported |
| NA12753 | B-Lymphocyte | NA12753 | Female | Caucasian | Not reported | |
| NA11994 | B-Lymphocyte | NA11994 | Male | Caucasian | 80 Years | Not reported |
| NA12248 | B-Lymphocyte | NA12248 | Male | Caucasian | 89 Years | Not reported |
| NA12005 | B-Lymphocyte | NA12005 | Male | Caucasian | 77 Years | Not reported |
| NA07345 | B-Lymphocyte | NA07345 | Female | Caucasian | 69 Years | Not reported |
| NA10847 | B-Lymphocyte | NA10847 | Female | Caucasian | 38 Years | Not reported |
| NA10839 | B-Lymphocyte | NA10839 | Female | Caucasian | 55 Years | Not reported |
| NA12762 | B-Lymphocyte | NA12762 | Male | Caucasian | Not reported | |
| NA12006 | B-Lymphocyte | NA12006 | Female | Caucasian | 75 Years | Not reported |
| NA12144 | B-Lymphocyte | NA12144 | Male | Caucasian | 71 Years | Not reported |
| NA12891 | B-Lymphocyte | NA12891 | Male | Caucasian | Not reported | |
| NA12814 | B-Lymphocyte | NA12814 | Male | Caucasian | Not reported | |
| NA12801 | B-Lymphocyte | NA12801 | Male | Caucasian | Not reported | |
| NA07055 | B-Lymphocyte | NA07055 | Female | Caucasian | 70 Years | Not reported |
| NA10863 | B-Lymphocyte | NA10863 | Female | Caucasian | 43 Years | Not reported |
| NA10855 | B-Lymphocyte | NA10855 | Female | Caucasian | 37 Years | Not reported |
| NA10854 | B-Lymphocyte | NA10854 | Female | Caucasian | 42 Years | Not reported |
| NA11882 | B-Lymphocyte | NA11882 | Female | Caucasian | 61 Years | Not reported |
| NA07019 | B-Lymphocyte | NA07019 | Female | Caucasian | 45 Years | Not reported |
| NA12717 | B-Lymphocyte | NA12717 | Female | Caucasian | Not reported | |
| NA12707 | B-Lymphocyte | NA12707 | Male | Caucasian | Not reported | |
| NA10835 | B-Lymphocyte | NA10835 | Male | Caucasian | 39 Years | Not reported |
| NA12873 | B-Lymphocyte | NA12873 | Female | Caucasian | Not reported | |
| NA07056 | B-Lymphocyte | NA07056 | Female | Caucasian | 65 Years | Not reported |
| NA10861 | B-Lymphocyte | NA10861 | Female | Caucasian | 49 Years | Not reported |
| NA10846 | B-Lymphocyte | NA10846 | Male | Caucasian | 43 Years | Not reported |
| NA12750 | B-Lymphocyte | NA12750 | Male | Caucasian | Not reported | |
| NA12802 | B-Lymphocyte | NA12802 | Female | Caucasian | Not reported | |
| NA07000 | B-Lymphocyte | NA07000 | Female | Caucasian | 66 Years | Not reported |
| NA12740 | B-Lymphocyte | NA12740 | Female | Caucasian | Not reported | |
| NA11832 | B-Lymphocyte | NA11832 | Female | Caucasian | 58 Years | Not reported |
| NA12239 | B-Lymphocyte | NA12239 | Female | Caucasian | 61 Years | Not reported |
- Sampleset ID:
- 2
- Name:
- YRI
- Description:
- Phase 1 HapMap
- Size:
- 88
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- None reported
| Sample ID | Cell Type | Subject ID | Sex | Subject Phenotype |
|---|---|---|---|---|
| NA18862 | B-Lymphocyte | NA18862 | Male | Not reported |
| NA19161 | B-Lymphocyte | NA19161 | Male | Not reported |
| NA18870 | B-Lymphocyte | NA18870 | Female | Not reported |
| NA18502 | B-Lymphocyte | NA18502 | Female | Not reported |
| NA19145 | B-Lymphocyte | NA19145 | Male | Not reported |
| NA19142 | B-Lymphocyte | NA19142 | Male | Not reported |
| NA18912 | B-Lymphocyte | NA18912 | Female | Not reported |
| NA18863 | B-Lymphocyte | NA18863 | Male | Not reported |
| NA19137 | B-Lymphocyte | NA19137 | Female | Not reported |
| NA18859 | B-Lymphocyte | NA18859 | Male | Not reported |
| NA19094 | B-Lymphocyte | NA19094 | Female | Not reported |
| NA18913 | B-Lymphocyte | NA18913 | Male | Not reported |
| NA18852 | B-Lymphocyte | NA18852 | Female | Not reported |
| NA19116 | B-Lymphocyte | NA19116 | Female | Not reported |
| NA19206 | B-Lymphocyte | NA19206 | Female | Not reported |
| NA19138 | B-Lymphocyte | NA19138 | Male | Not reported |
| NA19098 | B-Lymphocyte | NA19098 | Male | Not reported |
| NA18858 | B-Lymphocyte | NA18858 | Female | Not reported |
| NA19240 | B-Lymphocyte | NA19240 | Female | Not reported |
| NA19092 | B-Lymphocyte | NA19092 | Male | Not reported |
| NA19207 | B-Lymphocyte | NA19207 | Male | Not reported |
| NA19099 | B-Lymphocyte | NA19099 | Female | Not reported |
| NA19210 | B-Lymphocyte | NA19210 | Male | Not reported |
| NA19132 | B-Lymphocyte | NA19132 | Female | Not reported |
| NA19119 | B-Lymphocyte | NA19119 | Male | Not reported |
| NA19203 | B-Lymphocyte | NA19203 | Male | Not reported |
| NA19103 | B-Lymphocyte | NA19103 | Male | Not reported |
| NA18855 | B-Lymphocyte | NA18855 | Female | Not reported |
| NA19211 | B-Lymphocyte | NA19211 | Male | Not reported |
| NA18854 | B-Lymphocyte | NA18854 | Male | Not reported |
| NA19159 | B-Lymphocyte | NA19159 | Female | Not reported |
| NA19127 | B-Lymphocyte | NA19127 | Female | Not reported |
| NA18856 | B-Lymphocyte | NA18856 | Male | Not reported |
| NA19222 | B-Lymphocyte | NA19222 | Female | Not reported |
| NA18861 | B-Lymphocyte | NA18861 | Female | Not reported |
| NA19209 | B-Lymphocyte | NA19209 | Female | Not reported |
| NA19205 | B-Lymphocyte | NA19205 | Male | Not reported |
| NA19171 | B-Lymphocyte | NA19171 | Male | Not reported |
| NA19154 | B-Lymphocyte | NA19154 | Male | Not reported |
| NA18853 | B-Lymphocyte | NA18853 | Male | Not reported |
| NA19200 | B-Lymphocyte | NA19200 | Male | Not reported |
| NA19144 | B-Lymphocyte | NA19144 | Male | Not reported |
| NA18860 | B-Lymphocyte | NA18860 | Male | Not reported |
| NA18857 | B-Lymphocyte | NA18857 | Male | Not reported |
| NA18501 | B-Lymphocyte | NA18501 | Male | Not reported |
| NA19201 | B-Lymphocyte | NA19201 | Female | Not reported |
| NA19192 | B-Lymphocyte | NA19192 | Male | Not reported |
| NA19221 | B-Lymphocyte | NA19221 | Female | Not reported |
| NA18508 | B-Lymphocyte | NA18508 | Female | Not reported |
| NA18505 | B-Lymphocyte | NA18505 | Female | Not reported |
| NA19239 | B-Lymphocyte | NA19239 | Male | Not reported |
| NA18500 | B-Lymphocyte | NA18500 | Male | Not reported |
| NA19204 | B-Lymphocyte | NA19204 | Female | Not reported |
| NA19143 | B-Lymphocyte | NA19143 | Female | Not reported |
| NA19141 | B-Lymphocyte | NA19141 | Male | Not reported |
| NA19140 | B-Lymphocyte | NA19140 | Female | Not reported |
| NA18872 | B-Lymphocyte | NA18872 | Male | Not reported |
| NA19153 | B-Lymphocyte | NA19153 | Male | Not reported |
| NA19172 | B-Lymphocyte | NA19172 | Female | Not reported |
| NA19202 | B-Lymphocyte | NA19202 | Female | Not reported |
| NA19152 | B-Lymphocyte | NA19152 | Female | Not reported |
| NA19238 | B-Lymphocyte | NA19238 | Female | Not reported |
| NA18914 | B-Lymphocyte | NA18914 | Male | Not reported |
| NA19173 | B-Lymphocyte | NA19173 | Male | Not reported |
| NA18506 | B-Lymphocyte | NA18506 | Male | Not reported |
| NA19131 | B-Lymphocyte | NA19131 | Female | Not reported |
| NA19102 | B-Lymphocyte | NA19102 | Female | Not reported |
| NA19120 | B-Lymphocyte | NA19120 | Male | Not reported |
| NA19093 | B-Lymphocyte | NA19093 | Female | Not reported |
| NA18522 | B-Lymphocyte | NA18522 | Male | Not reported |
| NA19160 | B-Lymphocyte | NA19160 | Male | Not reported |
| NA19128 | B-Lymphocyte | NA19128 | Male | Not reported |
| NA18523 | B-Lymphocyte | NA18523 | Female | Not reported |
| NA18516 | B-Lymphocyte | NA18516 | Male | Not reported |
| NA19223 | B-Lymphocyte | NA19223 | Male | Not reported |
| NA19194 | B-Lymphocyte | NA19194 | Male | Not reported |
| NA18503 | B-Lymphocyte | NA18503 | Male | Not reported |
| NA19139 | B-Lymphocyte | NA19139 | Male | Not reported |
| NA18871 | B-Lymphocyte | NA18871 | Male | Not reported |
| NA18507 | B-Lymphocyte | NA18507 | Male | Not reported |
| NA19101 | B-Lymphocyte | NA19101 | Male | Not reported |
| NA19129 | B-Lymphocyte | NA19129 | Female | Not reported |
| NA18521 | B-Lymphocyte | NA18521 | Male | Not reported |
| NA19100 | B-Lymphocyte | NA19100 | Female | Not reported |
| NA18517 | B-Lymphocyte | NA18517 | Female | Not reported |
| NA18504 | B-Lymphocyte | NA18504 | Male | Not reported |
| NA19130 | B-Lymphocyte | NA19130 | Male | Not reported |
| NA18515 | B-Lymphocyte | NA18515 | Male | Not reported |
- Sampleset ID:
- 3
- Name:
- CHB
- Description:
- Phase 1 HapMap
- Size:
- 44
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- None reported
| Sample ID | Cell Type | Subject ID | Sex | Subject Phenotype |
|---|---|---|---|---|
| NA18570 | B-Lymphocyte | NA18570 | Female | Not reported |
| NA18594 | B-Lymphocyte | NA18594 | Female | Not reported |
| NA18577 | B-Lymphocyte | NA18577 | Female | Not reported |
| NA18611 | B-Lymphocyte | NA18611 | Male | Not reported |
| NA18558 | B-Lymphocyte | NA18558 | Male | Not reported |
| NA18582 | B-Lymphocyte | NA18582 | Female | Not reported |
| NA18603 | B-Lymphocyte | NA18603 | Male | Not reported |
| NA18608 | B-Lymphocyte | NA18608 | Male | Not reported |
| NA18609 | B-Lymphocyte | NA18609 | Male | Not reported |
| NA18532 | B-Lymphocyte | NA18532 | Female | Not reported |
| NA18636 | B-Lymphocyte | NA18636 | Male | Not reported |
| NA18566 | B-Lymphocyte | NA18566 | Female | Not reported |
| NA18635 | B-Lymphocyte | NA18635 | Male | Not reported |
| NA18605 | B-Lymphocyte | NA18605 | Male | Not reported |
| NA18563 | B-Lymphocyte | NA18563 | Male | Not reported |
| NA18537 | B-Lymphocyte | NA18537 | Female | Not reported |
| NA18637 | B-Lymphocyte | NA18637 | Male | Not reported |
| NA18555 | B-Lymphocyte | NA18555 | Female | Not reported |
| NA18526 | B-Lymphocyte | NA18526 | Female | Not reported |
| NA18612 | B-Lymphocyte | NA18612 | Male | Not reported |
| NA18564 | B-Lymphocyte | NA18564 | Female | Not reported |
| NA18633 | B-Lymphocyte | NA18633 | Male | Not reported |
| NA18542 | B-Lymphocyte | NA18542 | Female | Not reported |
| NA18593 | B-Lymphocyte | NA18593 | Female | Not reported |
| NA18561 | B-Lymphocyte | NA18561 | Male | Not reported |
| NA18550 | B-Lymphocyte | NA18550 | Female | Not reported |
| NA18620 | B-Lymphocyte | NA18620 | Male | Not reported |
| NA18529 | B-Lymphocyte | NA18529 | Female | Not reported |
| NA18579 | B-Lymphocyte | NA18579 | Female | Not reported |
| NA18562 | B-Lymphocyte | NA18562 | Male | Not reported |
| NA18573 | B-Lymphocyte | NA18573 | Female | Not reported |
| NA18623 | B-Lymphocyte | NA18623 | Male | Not reported |
| NA18571 | B-Lymphocyte | NA18571 | Female | Not reported |
| NA18545 | B-Lymphocyte | NA18545 | Female | Not reported |
| NA18632 | B-Lymphocyte | NA18632 | Male | Not reported |
| NA18622 | B-Lymphocyte | NA18622 | Male | Not reported |
| NA18624 | B-Lymphocyte | NA18624 | Male | Not reported |
| NA18547 | B-Lymphocyte | NA18547 | Female | Not reported |
| NA18524 | B-Lymphocyte | NA18524 | Male | Not reported |
| NA18572 | B-Lymphocyte | NA18572 | Male | Not reported |
| NA18576 | B-Lymphocyte | NA18576 | Female | Not reported |
| NA18621 | B-Lymphocyte | NA18621 | Male | Not reported |
| NA18552 | B-Lymphocyte | NA18552 | Female | Not reported |
| NA18592 | B-Lymphocyte | NA18592 | Female | Not reported |
- Sampleset ID:
- 4
- Name:
- JPT
- Description:
- Phase 1 HapMap
- Size:
- 44
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- None reported
| Sample ID | Cell Type | Subject ID | Sex | Subject Phenotype |
|---|---|---|---|---|
| NA18991 | B-Lymphocyte | NA18991 | Female | Not reported |
| NA18997 | B-Lymphocyte | NA18997 | Female | Not reported |
| NA18976 | B-Lymphocyte | NA18976 | Female | Not reported |
| NA18942 | B-Lymphocyte | NA18942 | Female | Not reported |
| NA18948 | B-Lymphocyte | NA18948 | Male | Not reported |
| NA18960 | B-Lymphocyte | NA18960 | Male | Not reported |
| NA18943 | B-Lymphocyte | NA18943 | Male | Not reported |
| NA19003 | B-Lymphocyte | NA19003 | Female | Not reported |
| NA18952 | B-Lymphocyte | NA18952 | Male | Not reported |
| NA18945 | B-Lymphocyte | NA18945 | Male | Not reported |
| NA18981 | B-Lymphocyte | NA18981 | Female | Not reported |
| NA18990 | B-Lymphocyte | NA18990 | Male | Not reported |
| NA18949 | B-Lymphocyte | NA18949 | Female | Not reported |
| NA18992 | B-Lymphocyte | NA18992 | Female | Not reported |
| NA18998 | B-Lymphocyte | NA18998 | Female | Not reported |
| NA19007 | B-Lymphocyte | NA19007 | Male | Not reported |
| NA18956 | B-Lymphocyte | NA18956 | Female | Not reported |
| NA18951 | B-Lymphocyte | NA18951 | Female | Not reported |
| NA18974 | B-Lymphocyte | NA18974 | Male | Not reported |
| NA18959 | B-Lymphocyte | NA18959 | Male | Not reported |
| NA18965 | B-Lymphocyte | NA18965 | Male | Not reported |
| NA18970 | B-Lymphocyte | NA18970 | Male | Not reported |
| NA18987 | B-Lymphocyte | NA18987 | Female | Not reported |
| NA18953 | B-Lymphocyte | NA18953 | Male | Not reported |
| NA18964 | B-Lymphocyte | NA18964 | Female | Not reported |
| NA18971 | B-Lymphocyte | NA18971 | Male | Not reported |
| NA18999 | B-Lymphocyte | NA18999 | Female | Not reported |
| NA18973 | B-Lymphocyte | NA18973 | Female | Not reported |
| NA18994 | B-Lymphocyte | NA18994 | Male | Not reported |
| NA18961 | B-Lymphocyte | NA18961 | Male | Not reported |
| NA19000 | B-Lymphocyte | NA19000 | Male | Not reported |
| NA18944 | B-Lymphocyte | NA18944 | Male | Not reported |
| NA18940 | B-Lymphocyte | NA18940 | Male | Not reported |
| NA19005 | B-Lymphocyte | NA19005 | Male | Not reported |
| NA18969 | B-Lymphocyte | NA18969 | Female | Not reported |
| NA18967 | B-Lymphocyte | NA18967 | Male | Not reported |
| NA18980 | B-Lymphocyte | NA18980 | Female | Not reported |
| NA18972 | B-Lymphocyte | NA18972 | Female | Not reported |
| NA18947 | B-Lymphocyte | NA18947 | Female | Not reported |
| NA18966 | B-Lymphocyte | NA18966 | Male | Not reported |
| NA18978 | B-Lymphocyte | NA18978 | Female | Not reported |
| NA18995 | B-Lymphocyte | NA18995 | Male | Not reported |
| NA18975 | B-Lymphocyte | NA18975 | Female | Not reported |
| NA18968 | B-Lymphocyte | NA18968 | Female | Not reported |
Experimental Details
| Experiment ID | Type | Method | Analysis | Platforms | Number of Variant Calls |
|---|---|---|---|---|---|
| 1 | Discovery | BAC aCGH | Probe signal intensity | GPL4010 | 4,656 |