nstd22 (McCarroll et al. 2008)
- Organism:
- Human
- Study Type:
- Control Set
- Submitter:
- Steven McCarroll
- Description:
- We sought to develop hybrid oligonucleotide microarrays to accurately analyze SNPs and copy number variation simultaneously; to use these arrays to map the genomic locations, allele frequencies and population-genetic properties of human CNPs; and to apply this knowledge to advance strategies for querying CNV in genome-wide association studies. See Variant Summary counts for nstd22 in dbVar Variant Summary.
- Publication(s):
- McCarroll et al. 2008
Detailed Information: Download 1319 Variant Regions, Download 44054 Variant Calls, Download Both, FTP
Variant Summary
Assembly used for analysis:
Remapped: GRCh38.p12 (hg38)
Remapped: GRCh37.p13 (hg19)
Submitted: NCBI35 (hg17)
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.11 | Chr1 | 112 | 3,929 | Remapped | NC_000001.11 |
| NC_000002.12 | Chr2 | 95 | 2,606 | Remapped | NC_000002.12 |
| NC_000003.12 | Chr3 | 80 | 2,563 | Remapped | NC_000003.12 |
| NC_000004.12 | Chr4 | 120 | 3,322 | Remapped | NC_000004.12 |
| NC_000005.10 | Chr5 | 74 | 2,802 | Remapped | NC_000005.10 |
| NC_000006.12 | Chr6 | 62 | 2,838 | Remapped | NC_000006.12 |
| NC_000007.14 | Chr7 | 89 | 2,941 | Remapped | NC_000007.14 |
| NC_000008.11 | Chr8 | 81 | 2,680 | Remapped | NC_000008.11 |
| NC_000009.12 | Chr9 | 67 | 2,079 | Remapped | NC_000009.12 |
| NC_000010.11 | Chr10 | 63 | 1,754 | Remapped | NC_000010.11 |
| NC_000011.10 | Chr11 | 63 | 1,837 | Remapped | NC_000011.10 |
| NC_000012.12 | Chr12 | 77 | 2,131 | Remapped | NC_000012.12 |
| NC_000013.11 | Chr13 | 37 | 824 | Remapped | NC_000013.11 |
| NC_000014.9 | Chr14 | 35 | 701 | Remapped | NC_000014.9 |
| NC_000015.10 | Chr15 | 47 | 1,370 | Remapped | NC_000015.10 |
| NC_000016.10 | Chr16 | 37 | 2,112 | Remapped | NC_000016.10 |
| NC_000017.11 | Chr17 | 32 | 1,461 | Remapped | NC_000017.11 |
| NC_000018.10 | Chr18 | 27 | 458 | Remapped | NC_000018.10 |
| NC_000019.10 | Chr19 | 41 | 1,490 | Remapped | NC_000019.10 |
| NC_000020.11 | Chr20 | 15 | 394 | Remapped | NC_000020.11 |
| NC_000021.9 | Chr21 | 18 | 736 | Remapped | NC_000021.9 |
| NC_000022.11 | Chr22 | 12 | 624 | Remapped | NC_000022.11 |
| NC_000023.11 | ChrX | 18 | 368 | Remapped | NC_000023.11 |
| NC_000024.10 | ChrY | 8 | 1,068 | Remapped | NC_000024.10 |
| NT_187516.1 | Chr1|NT_187516.1 | 1 | 4 | Remapped | NT_187516.1 |
| NT_187518.1 | Chr1|NT_187518.1 | 1 | 78 | Remapped | NT_187518.1 |
| NT_187646.1 | Chr1|NT_187646.1 | 1 | 78 | Remapped | NT_187646.1 |
| NW_011332687.1 | Chr1|NW_011332687.1 | 1 | 6 | Remapped | NW_011332687.1 |
| NW_012132914.1 | Chr1|NW_012132914.1 | 1 | 60 | Remapped | NW_012132914.1 |
| NW_017852928.1 | Chr1|NW_017852928.1 | 2 | 120 | Remapped | NW_017852928.1 |
| NW_018654707.1 | Chr1|NW_018654707.1 | 2 | 283 | Remapped | NW_018654707.1 |
| NT_187523.1 | Chr2|NT_187523.1 | 1 | 7 | Remapped | NT_187523.1 |
| NT_187530.1 | Chr2|NT_187530.1 | 1 | 5 | Remapped | NT_187530.1 |
| NT_187647.1 | Chr2|NT_187647.1 | 1 | 7 | Remapped | NT_187647.1 |
| NT_187536.1 | Chr3|NT_187536.1 | 2 | 33 | Remapped | NT_187536.1 |
| NT_187537.1 | Chr3|NT_187537.1 | 1 | 8 | Remapped | NT_187537.1 |
| NT_187539.1 | Chr3|NT_187539.1 | 1 | 69 | Remapped | NT_187539.1 |
| NW_011332691.1 | Chr3|NW_011332691.1 | 1 | 5 | Remapped | NW_011332691.1 |
| NT_167250.2 | Chr4|NT_167250.2 | 1 | 4 | Remapped | NT_167250.2 |
| NT_187542.1 | Chr4|NT_187542.1 | 1 | 2 | Remapped | NT_187542.1 |
| NW_003315915.1 | Chr4|NW_003315915.1 | 1 | 79 | Remapped | NW_003315915.1 |
| NW_013171800.1 | Chr4|NW_013171800.1 | 1 | 4 | Remapped | NW_013171800.1 |
| NW_016107298.1 | Chr5|NW_016107298.1 | 1 | 2 | Remapped | NW_016107298.1 |
| NT_167246.2 | Chr6|NT_167246.2 | 6 | 922 | Remapped | NT_167246.2 |
| NT_167247.2 | Chr6|NT_167247.2 | 3 | 632 | Remapped | NT_167247.2 |
| NT_167248.2 | Chr6|NT_167248.2 | 6 | 922 | Remapped | NT_167248.2 |
| NT_167249.2 | Chr6|NT_167249.2 | 6 | 922 | Remapped | NT_167249.2 |
| NT_167245.2 | Chr6|NT_167245.2 | 4 | 890 | Remapped | NT_167245.2 |
| NT_113891.3 | Chr6|NT_113891.3 | 6 | 922 | Remapped | NT_113891.3 |
| NT_167244.2 | Chr6|NT_167244.2 | 1 | 240 | Remapped | NT_167244.2 |
| NT_187558.1 | Chr7|NT_187558.1 | 2 | 76 | Remapped | NT_187558.1 |
| NT_187560.1 | Chr7|NT_187560.1 | 1 | 267 | Remapped | NT_187560.1 |
| NT_187562.1 | Chr7|NT_187562.1 | 5 | 446 | Remapped | NT_187562.1 |
| NT_187653.1 | Chr7|NT_187653.1 | 2 | 76 | Remapped | NT_187653.1 |
| NW_018654714.1 | Chr7|NW_018654714.1 | 2 | 430 | Remapped | NW_018654714.1 |
| NW_019805493.1 | Chr7|NW_019805493.1 | 1 | 2 | Remapped | NW_019805493.1 |
| NT_187565.1 | Chr8|NT_187565.1 | 1 | 46 | Remapped | NT_187565.1 |
| NT_187576.1 | Chr8|NT_187576.1 | 4 | 319 | Remapped | NT_187576.1 |
| NT_187654.1 | Chr8|NT_187654.1 | 1 | 46 | Remapped | NT_187654.1 |
| NW_017852932.1 | Chr8|NW_017852932.1 | 1 | 4 | Remapped | NW_017852932.1 |
| NW_018654717.1 | Chr8|NW_018654717.1 | 4 | 206 | Remapped | NW_018654717.1 |
| NW_009646201.1 | Chr9|NW_009646201.1 | 1 | 5 | Remapped | NW_009646201.1 |
| NW_013171806.1 | Chr10|NW_013171806.1 | 2 | 136 | Remapped | NW_013171806.1 |
| NT_187583.1 | Chr11|NT_187583.1 | 1 | 72 | Remapped | NT_187583.1 |
| NW_003315936.1 | Chr11|NW_003315936.1 | 1 | 3 | Remapped | NW_003315936.1 |
| NW_011332695.1 | Chr11|NW_011332695.1 | 1 | 72 | Remapped | NW_011332695.1 |
| NW_019805495.1 | Chr11|NW_019805495.1 | 2 | 67 | Remapped | NW_019805495.1 |
| NT_187658.1 | Chr12|NT_187658.1 | 1 | 81 | Remapped | NT_187658.1 |
| NT_187587.1 | Chr12|NT_187587.1 | 1 | 12 | Remapped | NT_187587.1 |
| NW_003315940.1 | Chr12|NW_003315940.1 | 1 | 2 | Remapped | NW_003315940.1 |
| NW_003571050.1 | Chr12|NW_003571050.1 | 1 | 162 | Remapped | NW_003571050.1 |
| NW_009646204.1 | Chr12|NW_009646204.1 | 1 | 4 | Remapped | NW_009646204.1 |
| NW_011332696.1 | Chr12|NW_011332696.1 | 1 | 11 | Remapped | NW_011332696.1 |
| NW_015148967.1 | Chr12|NW_015148967.1 | 1 | 3 | Remapped | NW_015148967.1 |
| NW_018654718.1 | Chr12|NW_018654718.1 | 1 | 16 | Remapped | NW_018654718.1 |
| NW_019805499.1 | Chr12|NW_019805499.1 | 2 | 39 | Remapped | NW_019805499.1 |
| NT_187601.1 | Chr14|NT_187601.1 | 1 | 2 | Remapped | NT_187601.1 |
| NT_187660.1 | Chr15|NT_187660.1 | 2 | 13 | Remapped | NT_187660.1 |
| NT_187603.1 | Chr15|NT_187603.1 | 1 | 3 | Remapped | NT_187603.1 |
| NT_187605.1 | Chr15|NT_187605.1 | 1 | 8 | Remapped | NT_187605.1 |
| NW_011332701.1 | Chr15|NW_011332701.1 | 2 | 13 | Remapped | NW_011332701.1 |
| NT_187607.1 | Chr16|NT_187607.1 | 3 | 36 | Remapped | NT_187607.1 |
| NT_187661.1 | Chr17|NT_187661.1 | 1 | 120 | Remapped | NT_187661.1 |
| NT_187663.1 | Chr17|NT_187663.1 | 1 | 30 | Remapped | NT_187663.1 |
| NW_003871093.1 | Chr17|NW_003871093.1 | 1 | 225 | Remapped | NW_003871093.1 |
| NT_187614.1 | Chr17|NT_187614.1 | 1 | 120 | Remapped | NT_187614.1 |
| NW_003315953.2 | Chr17|NW_003315953.2 | 1 | 29 | Remapped | NW_003315953.2 |
| NW_003871092.1 | Chr17|NW_003871092.1 | 1 | 46 | Remapped | NW_003871092.1 |
| NW_014040928.1 | Chr18|NW_014040928.1 | 1 | 3 | Remapped | NW_014040928.1 |
| NT_187693.1 | Chr19|NT_187693.1 | 3 | 141 | Remapped | NT_187693.1 |
| NW_003571061.2 | Chr19|NW_003571061.2 | 1 | 3 | Remapped | NW_003571061.2 |
| NW_003571060.1 | Chr19|NW_003571060.1 | 1 | 112 | Remapped | NW_003571060.1 |
| NW_003571055.2 | Chr19|NW_003571055.2 | 1 | 3 | Remapped | NW_003571055.2 |
| NT_187620.1 | Chr19|NT_187620.1 | 2 | 6 | Remapped | NT_187620.1 |
| NW_003315965.1 | Chr19|NW_003315965.1 | 1 | 6 | Remapped | NW_003315965.1 |
| NW_003571054.1 | Chr19|NW_003571054.1 | 2 | 115 | Remapped | NW_003571054.1 |
| NW_003315968.2 | Chr21|NW_003315968.2 | 1 | 62 | Remapped | NW_003315968.2 |
| NT_187633.1 | Chr22|NT_187633.1 | 2 | 413 | Remapped | NT_187633.1 |
| NW_003315972.2 | Chr22|NW_003315972.2 | 1 | 84 | Remapped | NW_003315972.2 |
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.10 | Chr1 | 112 | 3,929 | Remapped | NC_000001.10 |
| NC_000002.11 | Chr2 | 96 | 2,620 | Remapped | NC_000002.11 |
| NC_000003.11 | Chr3 | 80 | 2,563 | Remapped | NC_000003.11 |
| NC_000004.11 | Chr4 | 120 | 3,322 | Remapped | NC_000004.11 |
| NC_000005.9 | Chr5 | 74 | 2,802 | Remapped | NC_000005.9 |
| NC_000006.11 | Chr6 | 62 | 2,838 | Remapped | NC_000006.11 |
| NC_000007.13 | Chr7 | 90 | 3,107 | Remapped | NC_000007.13 |
| NC_000008.10 | Chr8 | 82 | 2,898 | Remapped | NC_000008.10 |
| NC_000009.11 | Chr9 | 68 | 2,089 | Remapped | NC_000009.11 |
| NC_000010.10 | Chr10 | 63 | 1,754 | Remapped | NC_000010.10 |
| NC_000011.9 | Chr11 | 63 | 1,837 | Remapped | NC_000011.9 |
| NC_000012.11 | Chr12 | 77 | 2,131 | Remapped | NC_000012.11 |
| NC_000013.10 | Chr13 | 37 | 824 | Remapped | NC_000013.10 |
| NC_000014.8 | Chr14 | 35 | 701 | Remapped | NC_000014.8 |
| NC_000015.9 | Chr15 | 47 | 1,370 | Remapped | NC_000015.9 |
| NC_000016.9 | Chr16 | 37 | 2,112 | Remapped | NC_000016.9 |
| NC_000017.10 | Chr17 | 32 | 1,461 | Remapped | NC_000017.10 |
| NC_000018.9 | Chr18 | 27 | 458 | Remapped | NC_000018.9 |
| NC_000019.9 | Chr19 | 41 | 1,490 | Remapped | NC_000019.9 |
| NC_000020.10 | Chr20 | 15 | 394 | Remapped | NC_000020.10 |
| NC_000021.8 | Chr21 | 18 | 736 | Remapped | NC_000021.8 |
| NC_000022.10 | Chr22 | 13 | 830 | Remapped | NC_000022.10 |
| NC_000023.10 | ChrX | 19 | 469 | Remapped | NC_000023.10 |
| NC_000024.9 | ChrY | 8 | 1,068 | Remapped | NC_000024.9 |
| NW_003315903.1 | Chr1|NW_003315903.1 | 1 | 56 | Remapped | NW_003315903.1 |
| NW_003871055.3 | Chr1|NW_003871055.3 | 1 | 3 | Remapped | NW_003871055.3 |
| NT_167250.1 | Chr4|NT_167250.1 | 1 | 4 | Remapped | NT_167250.1 |
| NW_003315915.1 | Chr4|NW_003315915.1 | 1 | 79 | Remapped | NW_003315915.1 |
| NW_003571034.1 | Chr4|NW_003571034.1 | 1 | 12 | Remapped | NW_003571034.1 |
| NW_004775428.1 | Chr5|NW_004775428.1 | 1 | 28 | Remapped | NW_004775428.1 |
| NT_113891.2 | Chr6|NT_113891.2 | 6 | 922 | Remapped | NT_113891.2 |
| NT_167244.1 | Chr6|NT_167244.1 | 1 | 240 | Remapped | NT_167244.1 |
| NT_167245.1 | Chr6|NT_167245.1 | 3 | 670 | Remapped | NT_167245.1 |
| NT_167246.1 | Chr6|NT_167246.1 | 6 | 922 | Remapped | NT_167246.1 |
| NT_167247.1 | Chr6|NT_167247.1 | 3 | 632 | Remapped | NT_167247.1 |
| NT_167248.1 | Chr6|NT_167248.1 | 6 | 922 | Remapped | NT_167248.1 |
| NT_167249.1 | Chr6|NT_167249.1 | 6 | 922 | Remapped | NT_167249.1 |
| NW_003871063.1 | Chr6|NW_003871063.1 | 1 | 240 | Remapped | NW_003871063.1 |
| NW_004070866.1 | Chr6|NW_004070866.1 | 1 | 124 | Remapped | NW_004070866.1 |
| NW_003571040.1 | Chr7|NW_003571040.1 | 5 | 446 | Remapped | NW_003571040.1 |
| NW_003871064.1 | Chr7|NW_003871064.1 | 2 | 18 | Remapped | NW_003871064.1 |
| NW_003571042.1 | Chr8|NW_003571042.1 | 4 | 319 | Remapped | NW_003571042.1 |
| NW_003315925.1 | Chr9|NW_003315925.1 | 1 | 5 | Remapped | NW_003315925.1 |
| NW_003571043.1 | Chr10|NW_003571043.1 | 1 | 3 | Remapped | NW_003571043.1 |
| NW_003871068.1 | Chr10|NW_003871068.1 | 2 | 33 | Remapped | NW_003871068.1 |
| NW_004504302.1 | Chr10|NW_004504302.1 | 1 | 4 | Remapped | NW_004504302.1 |
| NW_003315936.1 | Chr11|NW_003315936.1 | 1 | 3 | Remapped | NW_003315936.1 |
| NW_003315940.1 | Chr12|NW_003315940.1 | 1 | 2 | Remapped | NW_003315940.1 |
| NT_167251.1 | Chr17|NT_167251.1 | 1 | 218 | Remapped | NT_167251.1 |
| NW_003315949.1 | Chr17|NW_003315949.1 | 1 | 120 | Remapped | NW_003315949.1 |
| NW_003315953.1 | Chr17|NW_003315953.1 | 1 | 29 | Remapped | NW_003315953.1 |
| NW_003871092.1 | Chr17|NW_003871092.1 | 1 | 46 | Remapped | NW_003871092.1 |
| NW_003871093.1 | Chr17|NW_003871093.1 | 1 | 225 | Remapped | NW_003871093.1 |
| NW_003315965.1 | Chr19|NW_003315965.1 | 1 | 6 | Remapped | NW_003315965.1 |
| NW_003571053.2 | Chr19|NW_003571053.2 | 1 | 48 | Remapped | NW_003571053.2 |
| NW_004166865.1 | Chr19|NW_004166865.1 | 1 | 26 | Remapped | NW_004166865.1 |
| NW_004775434.1 | Chr19|NW_004775434.1 | 3 | 10 | Remapped | NW_004775434.1 |
| NW_003315968.1 | Chr21|NW_003315968.1 | 1 | 62 | Remapped | NW_003315968.1 |
| NW_003315972.1 | Chr22|NW_003315972.1 | 1 | 84 | Remapped | NW_003315972.1 |
| NW_003871100.1 | ChrX|NW_003871100.1 | 1 | 3 | Remapped | NW_003871100.1 |
| NW_004070880.2 | ChrX|NW_004070880.2 | 1 | 10 | Remapped | NW_004070880.2 |
| NW_004070881.1 | ChrX|NW_004070881.1 | 1 | 9 | Remapped | NW_004070881.1 |
| NW_004070890.2 | ChrX|NW_004070890.2 | 3 | 22 | Remapped | NW_004070890.2 |
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.8 | Chr1 | 112 | 3,929 | Submitted | NC_000001.8 |
| NC_000002.9 | Chr2 | 96 | 2,620 | Submitted | NC_000002.9 |
| NC_000003.9 | Chr3 | 80 | 2,563 | Submitted | NC_000003.9 |
| NC_000004.9 | Chr4 | 120 | 3,322 | Submitted | NC_000004.9 |
| NC_000005.8 | Chr5 | 74 | 2,802 | Submitted | NC_000005.8 |
| NC_000006.9 | Chr6 | 62 | 2,838 | Submitted | NC_000006.9 |
| NC_000007.11 | Chr7 | 92 | 3,332 | Submitted | NC_000007.11 |
| NC_000008.9 | Chr8 | 82 | 2,898 | Submitted | NC_000008.9 |
| NC_000009.9 | Chr9 | 68 | 2,089 | Submitted | NC_000009.9 |
| NC_000010.8 | Chr10 | 63 | 1,754 | Submitted | NC_000010.8 |
| NC_000011.8 | Chr11 | 63 | 1,837 | Submitted | NC_000011.8 |
| NC_000012.9 | Chr12 | 77 | 2,131 | Submitted | NC_000012.9 |
| NC_000013.9 | Chr13 | 37 | 824 | Submitted | NC_000013.9 |
| NC_000014.7 | Chr14 | 35 | 701 | Submitted | NC_000014.7 |
| NC_000015.8 | Chr15 | 47 | 1,370 | Submitted | NC_000015.8 |
| NC_000016.8 | Chr16 | 37 | 2,112 | Submitted | NC_000016.8 |
| NC_000017.9 | Chr17 | 32 | 1,461 | Submitted | NC_000017.9 |
| NC_000018.8 | Chr18 | 27 | 458 | Submitted | NC_000018.8 |
| NC_000019.8 | Chr19 | 42 | 1,516 | Submitted | NC_000019.8 |
| NC_000020.9 | Chr20 | 15 | 394 | Submitted | NC_000020.9 |
| NC_000021.7 | Chr21 | 18 | 736 | Submitted | NC_000021.7 |
| NC_000022.8 | Chr22 | 13 | 830 | Submitted | NC_000022.8 |
| NC_000023.8 | ChrX | 19 | 469 | Submitted | NC_000023.8 |
| NC_000024.7 | ChrY | 8 | 1,068 | Submitted | NC_000024.7 |
| Variant Region remap status | Variant Call remap status | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
| NC_000001.8 | Chr1 | 112 | 108 | 0 | 2 | 0 | 2 | 3,929 | 3,606 | 0 | 264 | 0 | 59 |
| NC_000002.9 | Chr2 | 96 | 95 | 0 | 1 | 0 | 0 | 2,620 | 2,618 | 0 | 2 | 0 | 0 |
| NC_000003.9 | Chr3 | 80 | 80 | 0 | 0 | 0 | 0 | 2,563 | 2,563 | 0 | 0 | 0 | 0 |
| NC_000004.9 | Chr4 | 120 | 117 | 0 | 0 | 0 | 3 | 3,322 | 3,227 | 0 | 0 | 0 | 95 |
| NC_000005.8 | Chr5 | 74 | 72 | 0 | 1 | 0 | 1 | 2,802 | 2,761 | 0 | 13 | 0 | 28 |
| NC_000006.9 | Chr6 | 62 | 55 | 0 | 0 | 0 | 7 | 2,838 | 1,792 | 0 | 0 | 0 | 1,046 |
| NC_000007.11 | Chr7 | 92 | 84 | 2 | 1 | 0 | 5 | 3,332 | 2,606 | 225 | 262 | 0 | 239 |
| NC_000008.9 | Chr8 | 82 | 77 | 0 | 1 | 0 | 4 | 2,898 | 2,342 | 0 | 237 | 0 | 319 |
| NC_000009.9 | Chr9 | 68 | 62 | 1 | 4 | 0 | 1 | 2,089 | 1,954 | 10 | 120 | 0 | 5 |
| NC_000010.8 | Chr10 | 63 | 58 | 1 | 0 | 0 | 4 | 1,754 | 1,549 | 165 | 0 | 0 | 40 |
| NC_000011.8 | Chr11 | 63 | 62 | 0 | 0 | 0 | 1 | 1,837 | 1,834 | 0 | 0 | 0 | 3 |
| NC_000012.9 | Chr12 | 77 | 76 | 0 | 0 | 0 | 1 | 2,131 | 2,129 | 0 | 0 | 0 | 2 |
| NC_000013.9 | Chr13 | 37 | 37 | 0 | 0 | 0 | 0 | 824 | 824 | 0 | 0 | 0 | 0 |
| NC_000014.7 | Chr14 | 35 | 35 | 0 | 0 | 0 | 0 | 701 | 701 | 0 | 0 | 0 | 0 |
| NC_000015.8 | Chr15 | 47 | 46 | 1 | 0 | 0 | 0 | 1,370 | 1,367 | 3 | 0 | 0 | 0 |
| NC_000016.8 | Chr16 | 37 | 37 | 0 | 0 | 0 | 0 | 2,112 | 2,112 | 0 | 0 | 0 | 0 |
| NC_000017.9 | Chr17 | 32 | 25 | 2 | 0 | 0 | 5 | 1,461 | 593 | 230 | 0 | 0 | 638 |
| NC_000018.8 | Chr18 | 27 | 27 | 0 | 0 | 0 | 0 | 458 | 458 | 0 | 0 | 0 | 0 |
| NC_000019.8 | Chr19 | 42 | 36 | 1 | 0 | 0 | 5 | 1,516 | 1,426 | 26 | 0 | 0 | 64 |
| NC_000020.9 | Chr20 | 15 | 15 | 0 | 0 | 0 | 0 | 394 | 394 | 0 | 0 | 0 | 0 |
| NC_000021.7 | Chr21 | 18 | 17 | 0 | 0 | 0 | 1 | 736 | 674 | 0 | 0 | 0 | 62 |
| NC_000022.8 | Chr22 | 13 | 12 | 0 | 0 | 0 | 1 | 830 | 746 | 0 | 0 | 0 | 84 |
| NC_000023.8 | ChrX | 19 | 13 | 0 | 0 | 0 | 6 | 469 | 425 | 0 | 0 | 0 | 44 |
| NC_000024.7 | ChrY | 8 | 8 | 0 | 0 | 0 | 0 | 1,068 | 1,068 | 0 | 0 | 0 | 0 |
| Variant Region remap status | Variant Call remap status | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
| NC_000001.8 | Chr1 | 112 | 97 | 5 | 2 | 0 | 8 | 3,929 | 2,902 | 209 | 267 | 0 | 551 |
| NC_000002.9 | Chr2 | 96 | 90 | 2 | 1 | 1 | 2 | 2,620 | 2,547 | 45 | 2 | 14 | 12 |
| NC_000003.9 | Chr3 | 80 | 75 | 0 | 0 | 0 | 5 | 2,563 | 2,448 | 0 | 0 | 0 | 115 |
| NC_000004.9 | Chr4 | 120 | 113 | 3 | 0 | 0 | 4 | 3,322 | 3,020 | 213 | 0 | 0 | 89 |
| NC_000005.8 | Chr5 | 74 | 72 | 0 | 1 | 0 | 1 | 2,802 | 2,787 | 0 | 13 | 0 | 2 |
| NC_000006.9 | Chr6 | 62 | 55 | 0 | 1 | 0 | 6 | 2,838 | 1,792 | 0 | 124 | 0 | 922 |
| NC_000007.11 | Chr7 | 92 | 77 | 7 | 0 | 0 | 8 | 3,332 | 2,080 | 422 | 0 | 0 | 830 |
| NC_000008.9 | Chr8 | 82 | 72 | 0 | 1 | 0 | 9 | 2,898 | 2,304 | 0 | 237 | 0 | 357 |
| NC_000009.9 | Chr9 | 68 | 61 | 2 | 3 | 1 | 1 | 2,089 | 1,925 | 31 | 118 | 10 | 5 |
| NC_000010.8 | Chr10 | 63 | 59 | 1 | 1 | 0 | 2 | 1,754 | 1,442 | 165 | 11 | 0 | 136 |
| NC_000011.8 | Chr11 | 63 | 58 | 1 | 0 | 0 | 4 | 1,837 | 1,692 | 3 | 0 | 0 | 142 |
| NC_000012.9 | Chr12 | 77 | 67 | 0 | 0 | 0 | 10 | 2,131 | 1,801 | 0 | 0 | 0 | 330 |
| NC_000013.9 | Chr13 | 37 | 36 | 1 | 0 | 0 | 0 | 824 | 789 | 35 | 0 | 0 | 0 |
| NC_000014.7 | Chr14 | 35 | 32 | 2 | 0 | 0 | 1 | 701 | 660 | 39 | 0 | 0 | 2 |
| NC_000015.8 | Chr15 | 47 | 43 | 0 | 0 | 0 | 4 | 1,370 | 1,346 | 0 | 0 | 0 | 24 |
| NC_000016.8 | Chr16 | 37 | 34 | 0 | 0 | 0 | 3 | 2,112 | 2,076 | 0 | 0 | 0 | 36 |
| NC_000017.9 | Chr17 | 32 | 25 | 2 | 0 | 0 | 5 | 1,461 | 781 | 230 | 0 | 0 | 450 |
| NC_000018.8 | Chr18 | 27 | 26 | 0 | 0 | 0 | 1 | 458 | 455 | 0 | 0 | 0 | 3 |
| NC_000019.8 | Chr19 | 42 | 35 | 2 | 0 | 0 | 5 | 1,516 | 1,382 | 7 | 0 | 0 | 127 |
| NC_000020.9 | Chr20 | 15 | 15 | 0 | 0 | 0 | 0 | 394 | 394 | 0 | 0 | 0 | 0 |
| NC_000021.7 | Chr21 | 18 | 17 | 0 | 0 | 0 | 1 | 736 | 674 | 0 | 0 | 0 | 62 |
| NC_000022.8 | Chr22 | 13 | 10 | 1 | 0 | 0 | 2 | 830 | 532 | 7 | 0 | 0 | 291 |
| NC_000023.8 | ChrX | 19 | 15 | 3 | 0 | 1 | 0 | 469 | 344 | 24 | 0 | 101 | 0 |
| NC_000024.7 | ChrY | 8 | 8 | 0 | 0 | 0 | 0 | 1,068 | 1,068 | 0 | 0 | 0 | 0 |
Samplesets
Number of Samplesets: 1
- Name:
- Phase 1 HapMap
- Size:
- 270
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- None reported
| Sample ID | Cell Type | Subject ID | Sex | Ethnicity | Subject Age | Subject Phenotype |
|---|---|---|---|---|---|---|
| NA12812 | B-Lymphocyte | NA12812 | Male | Caucasian | Not reported | |
| NA07348 | B-Lymphocyte | NA07348 | Female | Caucasian | 45 Years | Not reported |
| NA18502 | B-Lymphocyte | NA18502 | Female | Not reported | ||
| NA11993 | B-Lymphocyte | NA11993 | Female | Caucasian | 80 Years | Not reported |
| NA12813 | B-Lymphocyte | NA12813 | Female | Caucasian | Not reported | |
| NA12761 | B-Lymphocyte | NA12761 | Female | Caucasian | Not reported | |
| NA12154 | B-Lymphocyte | NA12154 | Male | Caucasian | 92 Years | Not reported |
| NA12057 | B-Lymphocyte | NA12057 | Female | Caucasian | 75 Years | Not reported |
| NA10857 | B-Lymphocyte | NA10857 | Male | Caucasian | 47 Years | Not reported |
| NA11839 | B-Lymphocyte | NA11839 | Male | Caucasian | 67 Years | Not reported |
| NA12156 | B-Lymphocyte | NA12156 | Female | Caucasian | 81 Years | Not reported |
| NA11881 | B-Lymphocyte | NA11881 | Male | Caucasian | 62 Years | Not reported |
| NA11831 | B-Lymphocyte | NA11831 | Male | Caucasian | 73 Years | Not reported |
| NA06993 | B-Lymphocyte | NA06993 | Male | Caucasian | 74 Years | Not reported |
| NA10830 | B-Lymphocyte | NA10830 | Male | Caucasian | 66 Years | Not reported |
| NA10856 | B-Lymphocyte | NA10856 | Male | Caucasian | 46 Years | Not reported |
| NA07048 | B-Lymphocyte | NA07048 | Male | Caucasian | 43 Years | Not reported |
| NA12056 | B-Lymphocyte | NA12056 | Male | Caucasian | 79 Years | Not reported |
| NA12236 | B-Lymphocyte | NA12236 | Female | Caucasian | 86 Years | Not reported |
| NA12751 | B-Lymphocyte | NA12751 | Female | Caucasian | Not reported | |
| NA12155 | B-Lymphocyte | NA12155 | Male | Caucasian | 86 Years | Not reported |
| NA12146 | B-Lymphocyte | NA12146 | Male | Caucasian | 61 Years | Not reported |
| NA12872 | B-Lymphocyte | NA12872 | Male | Caucasian | Not reported | |
| NA12865 | B-Lymphocyte | NA12865 | Female | Caucasian | Not reported | |
| NA12249 | B-Lymphocyte | NA12249 | Female | Caucasian | 77 Years | Not reported |
| NA11830 | B-Lymphocyte | NA11830 | Female | Caucasian | 63 Years | Not reported |
| NA12892 | B-Lymphocyte | NA12892 | Female | Caucasian | Not reported | |
| NA12716 | B-Lymphocyte | NA12716 | Male | Caucasian | Not reported | |
| NA10859 | B-Lymphocyte | NA10859 | Female | Caucasian | 41 Years | Not reported |
| NA10838 | B-Lymphocyte | NA10838 | Male | Caucasian | 60 Years | Not reported |
| NA06991 | B-Lymphocyte | NA06991 | Female | Caucasian | 42 Years | Not reported |
| NA12760 | B-Lymphocyte | NA12760 | Male | Caucasian | Not reported | |
| NA12763 | B-Lymphocyte | NA12763 | Female | Caucasian | Not reported | |
| NA11995 | B-Lymphocyte | NA11995 | Female | Caucasian | 84 Years | Not reported |
| NA10831 | B-Lymphocyte | NA10831 | Female | Caucasian | 59 Years | Not reported |
| NA11829 | B-Lymphocyte | NA11829 | Male | Caucasian | 72 Years | Not reported |
| NA11992 | B-Lymphocyte | NA11992 | Male | Caucasian | 86 Years | Not reported |
| NA12815 | B-Lymphocyte | NA12815 | Female | Caucasian | Not reported | |
| NA12043 | B-Lymphocyte | NA12043 | Male | Caucasian | 74 Years | Not reported |
| NA12003 | B-Lymphocyte | NA12003 | Male | Caucasian | 97 Years | Not reported |
| NA18501 | B-Lymphocyte | NA18501 | Male | Not reported | ||
| NA07022 | B-Lymphocyte | NA07022 | Male | Caucasian | 63 Years | Not reported |
| NA10860 | B-Lymphocyte | NA10860 | Male | Caucasian | 50 Years | Not reported |
| NA06985 | B-Lymphocyte | NA06985 | Female | Caucasian | 69 Years | Not reported |
| NA18508 | B-Lymphocyte | NA18508 | Female | Not reported | ||
| NA18505 | B-Lymphocyte | NA18505 | Female | Not reported | ||
| NA12044 | B-Lymphocyte | NA12044 | Female | Caucasian | 70 Years | Not reported |
| NA18500 | B-Lymphocyte | NA18500 | Male | Not reported | ||
| NA12234 | B-Lymphocyte | NA12234 | Female | Caucasian | 74 Years | Not reported |
| NA12264 | B-Lymphocyte | NA12264 | Male | Caucasian | 72 Years | Not reported |
| NA12874 | B-Lymphocyte | NA12874 | Male | Caucasian | Not reported | |
| NA10851 | B-Lymphocyte | NA10851 | Male | Caucasian | 52 Years | Not reported |
| NA12145 | B-Lymphocyte | NA12145 | Female | Caucasian | 70 Years | Not reported |
| NA12752 | B-Lymphocyte | NA12752 | Male | Caucasian | Not reported | |
| NA07029 | B-Lymphocyte | NA07029 | Male | Caucasian | 47 Years | Not reported |
| NA12004 | B-Lymphocyte | NA12004 | Female | Caucasian | 92 Years | Not reported |
| NA07357 | B-Lymphocyte | NA07357 | Male | Caucasian | 69 Years | Not reported |
| NA06994 | B-Lymphocyte | NA06994 | Male | Caucasian | 68 Years | Not reported |
| NA12878 | B-Lymphocyte | NA12878 | Female | Caucasian | Not reported | |
| NA11840 | B-Lymphocyte | NA11840 | Female | Caucasian | 67 Years | Not reported |
| NA12864 | B-Lymphocyte | NA12864 | Male | Caucasian | Not reported | |
| NA18506 | B-Lymphocyte | NA18506 | Male | Not reported | ||
| NA07034 | B-Lymphocyte | NA07034 | Male | Caucasian | 71 Years | Not reported |
| NA12753 | B-Lymphocyte | NA12753 | Female | Caucasian | Not reported | |
| NA11994 | B-Lymphocyte | NA11994 | Male | Caucasian | 80 Years | Not reported |
| NA12248 | B-Lymphocyte | NA12248 | Male | Caucasian | 89 Years | Not reported |
| NA12005 | B-Lymphocyte | NA12005 | Male | Caucasian | 77 Years | Not reported |
| NA07345 | B-Lymphocyte | NA07345 | Female | Caucasian | 69 Years | Not reported |
| NA10847 | B-Lymphocyte | NA10847 | Female | Caucasian | 38 Years | Not reported |
| NA10839 | B-Lymphocyte | NA10839 | Female | Caucasian | 55 Years | Not reported |
| NA12762 | B-Lymphocyte | NA12762 | Male | Caucasian | Not reported | |
| NA12006 | B-Lymphocyte | NA12006 | Female | Caucasian | 75 Years | Not reported |
| NA12144 | B-Lymphocyte | NA12144 | Male | Caucasian | 71 Years | Not reported |
| NA12891 | B-Lymphocyte | NA12891 | Male | Caucasian | Not reported | |
| NA12814 | B-Lymphocyte | NA12814 | Male | Caucasian | Not reported | |
| NA12801 | B-Lymphocyte | NA12801 | Male | Caucasian | Not reported | |
| NA07055 | B-Lymphocyte | NA07055 | Female | Caucasian | 70 Years | Not reported |
| NA10863 | B-Lymphocyte | NA10863 | Female | Caucasian | 43 Years | Not reported |
| NA10855 | B-Lymphocyte | NA10855 | Female | Caucasian | 37 Years | Not reported |
| NA10854 | B-Lymphocyte | NA10854 | Female | Caucasian | 42 Years | Not reported |
| NA11882 | B-Lymphocyte | NA11882 | Female | Caucasian | 61 Years | Not reported |
| NA07019 | B-Lymphocyte | NA07019 | Female | Caucasian | 45 Years | Not reported |
| NA12717 | B-Lymphocyte | NA12717 | Female | Caucasian | Not reported | |
| NA12707 | B-Lymphocyte | NA12707 | Male | Caucasian | Not reported | |
| NA10835 | B-Lymphocyte | NA10835 | Male | Caucasian | 39 Years | Not reported |
| NA12873 | B-Lymphocyte | NA12873 | Female | Caucasian | Not reported | |
| NA18503 | B-Lymphocyte | NA18503 | Male | Not reported | ||
| NA18507 | B-Lymphocyte | NA18507 | Male | Not reported | ||
| NA07056 | B-Lymphocyte | NA07056 | Female | Caucasian | 65 Years | Not reported |
| NA12875 | B-Lymphocyte | NA12875 | Female | Caucasian | Not reported | |
| NA10861 | B-Lymphocyte | NA10861 | Female | Caucasian | 49 Years | Not reported |
| NA10846 | B-Lymphocyte | NA10846 | Male | Caucasian | 43 Years | Not reported |
| NA12750 | B-Lymphocyte | NA12750 | Male | Caucasian | Not reported | |
| NA12802 | B-Lymphocyte | NA12802 | Female | Caucasian | Not reported | |
| NA07000 | B-Lymphocyte | NA07000 | Female | Caucasian | 66 Years | Not reported |
| NA12740 | B-Lymphocyte | NA12740 | Female | Caucasian | Not reported | |
| NA11832 | B-Lymphocyte | NA11832 | Female | Caucasian | 58 Years | Not reported |
| NA12239 | B-Lymphocyte | NA12239 | Female | Caucasian | 61 Years | Not reported |
| NA18504 | B-Lymphocyte | NA18504 | Male | Not reported | ||
| NA18515 | B-Lymphocyte | NA18515 | Male | Not reported |
Experimental Details
| Experiment ID | Type | Method | Analysis | Platforms | Data | Number of Variant Calls |
|---|---|---|---|---|---|---|
| 1 | Discovery | SNP array | Probe signal intensity | [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array | GEO, dbGaP | 44,054 |