nstd214 (Naslavsky et al. 2022)
- Organism:
- Human
- Study Type:
- Collection
- Submitter:
- Michel Naslavsky
- Submitter URL:
- http://abraom.ib.usp.br
- Description:
- Variants called from whole-genome sequecing of SABE1171, a cohort of 1,171 elderly individuals representative of São Paulo, Brazil. See Variant Summary counts for nstd214 in dbVar Variant Summary.
- Publication(s):
- Naslavsky et al. 2022
Detailed Information: Download 89819 Variant Regions, Download 95229 Variant Calls, Download Both, FTP
Variant Summary
Assembly used for analysis:
Submitted: GRCh38 (hg38)
Remapped: GRCh37.p13 (hg19)
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.11 | Chr1 | 5,637 | 6,006 | Submitted | NC_000001.11 |
| NC_000002.12 | Chr2 | 7,096 | 7,455 | Submitted | NC_000002.12 |
| NC_000003.12 | Chr3 | 4,785 | 5,124 | Submitted | NC_000003.12 |
| NC_000004.12 | Chr4 | 5,764 | 6,108 | Submitted | NC_000004.12 |
| NC_000005.10 | Chr5 | 4,849 | 5,073 | Submitted | NC_000005.10 |
| NC_000006.12 | Chr6 | 4,785 | 5,107 | Submitted | NC_000006.12 |
| NC_000007.14 | Chr7 | 6,073 | 6,439 | Submitted | NC_000007.14 |
| NC_000008.11 | Chr8 | 4,712 | 4,991 | Submitted | NC_000008.11 |
| NC_000009.12 | Chr9 | 3,047 | 3,256 | Submitted | NC_000009.12 |
| NC_000010.11 | Chr10 | 4,850 | 5,125 | Submitted | NC_000010.11 |
| NC_000011.10 | Chr11 | 3,854 | 4,103 | Submitted | NC_000011.10 |
| NC_000012.12 | Chr12 | 4,133 | 4,405 | Submitted | NC_000012.12 |
| NC_000013.11 | Chr13 | 3,265 | 3,501 | Submitted | NC_000013.11 |
| NC_000014.9 | Chr14 | 2,235 | 2,364 | Submitted | NC_000014.9 |
| NC_000015.10 | Chr15 | 2,106 | 2,208 | Submitted | NC_000015.10 |
| NC_000016.10 | Chr16 | 3,352 | 3,511 | Submitted | NC_000016.10 |
| NC_000017.11 | Chr17 | 3,249 | 3,419 | Submitted | NC_000017.11 |
| NC_000018.10 | Chr18 | 2,690 | 2,874 | Submitted | NC_000018.10 |
| NC_000019.10 | Chr19 | 2,998 | 3,155 | Submitted | NC_000019.10 |
| NC_000020.11 | Chr20 | 2,518 | 2,685 | Submitted | NC_000020.11 |
| NC_000021.9 | Chr21 | 1,986 | 2,108 | Submitted | NC_000021.9 |
| NC_000022.11 | Chr22 | 1,952 | 2,070 | Submitted | NC_000022.11 |
| NC_000023.11 | ChrX | 3,791 | 4,047 | Submitted | NC_000023.11 |
| NC_000024.10 | ChrY | 92 | 95 | Submitted | NC_000024.10 |
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.10 | Chr1 | 5,524 | 5,890 | Remapped | NC_000001.10 |
| NC_000002.11 | Chr2 | 7,011 | 7,367 | Remapped | NC_000002.11 |
| NC_000003.11 | Chr3 | 4,735 | 5,074 | Remapped | NC_000003.11 |
| NC_000004.11 | Chr4 | 5,693 | 6,024 | Remapped | NC_000004.11 |
| NC_000005.9 | Chr5 | 4,799 | 5,023 | Remapped | NC_000005.9 |
| NC_000006.11 | Chr6 | 4,646 | 4,961 | Remapped | NC_000006.11 |
| NC_000007.13 | Chr7 | 5,967 | 6,325 | Remapped | NC_000007.13 |
| NC_000008.10 | Chr8 | 4,579 | 4,847 | Remapped | NC_000008.10 |
| NC_000009.11 | Chr9 | 2,998 | 3,207 | Remapped | NC_000009.11 |
| NC_000010.10 | Chr10 | 4,659 | 4,930 | Remapped | NC_000010.10 |
| NC_000011.9 | Chr11 | 3,792 | 4,041 | Remapped | NC_000011.9 |
| NC_000012.11 | Chr12 | 4,086 | 4,358 | Remapped | NC_000012.11 |
| NC_000013.10 | Chr13 | 3,160 | 3,395 | Remapped | NC_000013.10 |
| NC_000014.8 | Chr14 | 2,142 | 2,260 | Remapped | NC_000014.8 |
| NC_000015.9 | Chr15 | 2,093 | 2,195 | Remapped | NC_000015.9 |
| NC_000016.9 | Chr16 | 3,327 | 3,486 | Remapped | NC_000016.9 |
| NC_000017.10 | Chr17 | 2,873 | 3,031 | Remapped | NC_000017.10 |
| NC_000018.9 | Chr18 | 2,673 | 2,857 | Remapped | NC_000018.9 |
| NC_000019.9 | Chr19 | 2,862 | 3,013 | Remapped | NC_000019.9 |
| NC_000020.10 | Chr20 | 2,336 | 2,495 | Remapped | NC_000020.10 |
| NC_000021.8 | Chr21 | 1,914 | 2,036 | Remapped | NC_000021.8 |
| NC_000022.10 | Chr22 | 1,834 | 1,949 | Remapped | NC_000022.10 |
| NC_000023.10 | ChrX | 3,661 | 3,906 | Remapped | NC_000023.10 |
| NC_000024.9 | ChrY | 85 | 86 | Remapped | NC_000024.9 |
| NT_113923.1 | Unplaced|NT_113923.1 | 27 | 27 | Remapped | NT_113923.1 |
| NT_167222.1 | Unplaced|NT_167222.1 | 3 | 3 | Remapped | NT_167222.1 |
| NT_167227.1 | Unplaced|NT_167227.1 | 4 | 4 | Remapped | NT_167227.1 |
| NT_167214.1 | Unplaced|NT_167214.1 | 3 | 3 | Remapped | NT_167214.1 |
| NT_167218.1 | Unplaced|NT_167218.1 | 1 | 1 | Remapped | NT_167218.1 |
| NT_167213.1 | Unplaced|NT_167213.1 | 1 | 1 | Remapped | NT_167213.1 |
| NT_167225.1 | Unplaced|NT_167225.1 | 2 | 2 | Remapped | NT_167225.1 |
| NT_167211.1 | Unplaced|NT_167211.1 | 7 | 7 | Remapped | NT_167211.1 |
| NT_167224.1 | Unplaced|NT_167224.1 | 1 | 1 | Remapped | NT_167224.1 |
| NT_167233.1 | Unplaced|NT_167233.1 | 1 | 1 | Remapped | NT_167233.1 |
| NT_167237.1 | Unplaced|NT_167237.1 | 3 | 3 | Remapped | NT_167237.1 |
| NT_167209.1 | Unplaced|NT_167209.1 | 1 | 1 | Remapped | NT_167209.1 |
| NT_167207.1 | Chr1|NT_167207.1 | 4 | 4 | Remapped | NT_167207.1 |
| NW_003315903.1 | Chr1|NW_003315903.1 | 19 | 19 | Remapped | NW_003315903.1 |
| NW_003315904.1 | Chr1|NW_003315904.1 | 11 | 11 | Remapped | NW_003315904.1 |
| NW_003571030.1 | Chr1|NW_003571030.1 | 34 | 35 | Remapped | NW_003571030.1 |
| NW_003871055.3 | Chr1|NW_003871055.3 | 141 | 154 | Remapped | NW_003871055.3 |
| NW_003871056.3 | Chr1|NW_003871056.3 | 16 | 16 | Remapped | NW_003871056.3 |
| NW_003871057.1 | Chr1|NW_003871057.1 | 17 | 17 | Remapped | NW_003871057.1 |
| NW_004070864.2 | Chr1|NW_004070864.2 | 1 | 1 | Remapped | NW_004070864.2 |
| NW_003571031.1 | Chr2|NW_003571031.1 | 2 | 3 | Remapped | NW_003571031.1 |
| NW_003571032.1 | Chr2|NW_003571032.1 | 13 | 13 | Remapped | NW_003571032.1 |
| NW_004504299.1 | Chr2|NW_004504299.1 | 20 | 20 | Remapped | NW_004504299.1 |
| NW_003315911.1 | Chr3|NW_003315911.1 | 1 | 1 | Remapped | NW_003315911.1 |
| NW_003315912.1 | Chr3|NW_003315912.1 | 9 | 9 | Remapped | NW_003315912.1 |
| NW_003871058.1 | Chr3|NW_003871058.1 | 15 | 16 | Remapped | NW_003871058.1 |
| NW_003871059.1 | Chr3|NW_003871059.1 | 1 | 1 | Remapped | NW_003871059.1 |
| NW_003871060.1 | Chr3|NW_003871060.1 | 8 | 8 | Remapped | NW_003871060.1 |
| NW_004775426.1 | Chr3|NW_004775426.1 | 3 | 6 | Remapped | NW_004775426.1 |
| NT_113885.1 | Chr4|NT_113885.1 | 2 | 2 | Remapped | NT_113885.1 |
| NW_003571034.1 | Chr4|NW_003571034.1 | 32 | 35 | Remapped | NW_003571034.1 |
| NW_003571035.1 | Chr4|NW_003571035.1 | 9 | 9 | Remapped | NW_003571035.1 |
| NW_004775427.1 | Chr4|NW_004775427.1 | 24 | 24 | Remapped | NW_004775427.1 |
| NT_113948.1 | Chr5|NT_113948.1 | 1 | 1 | Remapped | NT_113948.1 |
| NW_003871061.1 | Chr5|NW_003871061.1 | 3 | 3 | Remapped | NW_003871061.1 |
| NT_167246.1 | Chr6|NT_167246.1 | 4 | 4 | Remapped | NT_167246.1 |
| NT_167248.1 | Chr6|NT_167248.1 | 4 | 4 | Remapped | NT_167248.1 |
| NW_003871062.1 | Chr6|NW_003871062.1 | 5 | 5 | Remapped | NW_003871062.1 |
| NW_004070866.1 | Chr6|NW_004070866.1 | 4 | 4 | Remapped | NW_004070866.1 |
| NW_004504300.1 | Chr6|NW_004504300.1 | 27 | 29 | Remapped | NW_004504300.1 |
| NW_004775429.1 | Chr6|NW_004775429.1 | 20 | 22 | Remapped | NW_004775429.1 |
| NW_003571037.1 | Chr7|NW_003571037.1 | 18 | 18 | Remapped | NW_003571037.1 |
| NW_003571038.1 | Chr7|NW_003571038.1 | 15 | 18 | Remapped | NW_003571038.1 |
| NW_003571039.1 | Chr7|NW_003571039.1 | 7 | 7 | Remapped | NW_003571039.1 |
| NW_003571040.1 | Chr7|NW_003571040.1 | 25 | 32 | Remapped | NW_003571040.1 |
| NW_003571041.1 | Chr7|NW_003571041.1 | 13 | 13 | Remapped | NW_003571041.1 |
| NW_003871064.1 | Chr7|NW_003871064.1 | 76 | 78 | Remapped | NW_003871064.1 |
| NW_003871065.1 | Chr7|NW_003871065.1 | 5 | 5 | Remapped | NW_003871065.1 |
| NW_004775430.1 | Chr7|NW_004775430.1 | 11 | 14 | Remapped | NW_004775430.1 |
| NW_003315923.1 | Chr8|NW_003315923.1 | 55 | 57 | Remapped | NW_003315923.1 |
| NW_003315924.1 | Chr8|NW_003315924.1 | 57 | 62 | Remapped | NW_003315924.1 |
| NW_003571042.1 | Chr8|NW_003571042.1 | 89 | 96 | Remapped | NW_003571042.1 |
| NW_003871066.2 | Chr8|NW_003871066.2 | 5 | 5 | Remapped | NW_003871066.2 |
| NW_004775431.1 | Chr8|NW_004775431.1 | 1 | 1 | Remapped | NW_004775431.1 |
| NT_113914.1 | Chr9|NT_113914.1 | 4 | 4 | Remapped | NT_113914.1 |
| NT_113916.2 | Chr9|NT_113916.2 | 1 | 1 | Remapped | NT_113916.2 |
| NW_003315925.1 | Chr9|NW_003315925.1 | 23 | 25 | Remapped | NW_003315925.1 |
| NW_003315926.1 | Chr9|NW_003315926.1 | 15 | 15 | Remapped | NW_003315926.1 |
| NW_003315927.1 | Chr9|NW_003315927.1 | 13 | 13 | Remapped | NW_003315927.1 |
| NW_003871067.1 | Chr9|NW_003871067.1 | 12 | 12 | Remapped | NW_003871067.1 |
| NW_004070867.1 | Chr9|NW_004070867.1 | 4 | 4 | Remapped | NW_004070867.1 |
| NW_004070868.1 | Chr9|NW_004070868.1 | 15 | 17 | Remapped | NW_004070868.1 |
| NW_004070869.1 | Chr9|NW_004070869.1 | 10 | 10 | Remapped | NW_004070869.1 |
| NW_004504301.1 | Chr9|NW_004504301.1 | 10 | 10 | Remapped | NW_004504301.1 |
| NW_003315932.1 | Chr10|NW_003315932.1 | 3 | 4 | Remapped | NW_003315932.1 |
| NW_003315933.1 | Chr10|NW_003315933.1 | 5 | 5 | Remapped | NW_003315933.1 |
| NW_003571043.1 | Chr10|NW_003571043.1 | 6 | 6 | Remapped | NW_003571043.1 |
| NW_003871068.1 | Chr10|NW_003871068.1 | 77 | 77 | Remapped | NW_003871068.1 |
| NW_003871069.1 | Chr10|NW_003871069.1 | 5 | 5 | Remapped | NW_003871069.1 |
| NW_003871070.1 | Chr10|NW_003871070.1 | 2 | 2 | Remapped | NW_003871070.1 |
| NW_003871071.1 | Chr10|NW_003871071.1 | 16 | 16 | Remapped | NW_003871071.1 |
| NW_004070870.1 | Chr10|NW_004070870.1 | 43 | 43 | Remapped | NW_004070870.1 |
| NW_004504302.1 | Chr10|NW_004504302.1 | 5 | 5 | Remapped | NW_004504302.1 |
| NW_004775432.1 | Chr10|NW_004775432.1 | 2 | 2 | Remapped | NW_004775432.1 |
| NT_113921.2 | Chr11|NT_113921.2 | 1 | 1 | Remapped | NT_113921.2 |
| NW_003571045.1 | Chr11|NW_003571045.1 | 2 | 2 | Remapped | NW_003571045.1 |
| NW_003571046.1 | Chr11|NW_003571046.1 | 28 | 28 | Remapped | NW_003571046.1 |
| NW_003871072.2 | Chr11|NW_003871072.2 | 7 | 7 | Remapped | NW_003871072.2 |
| NW_003871075.1 | Chr11|NW_003871075.1 | 5 | 5 | Remapped | NW_003871075.1 |
| NW_003871076.1 | Chr11|NW_003871076.1 | 3 | 3 | Remapped | NW_003871076.1 |
| NW_003871077.1 | Chr11|NW_003871077.1 | 4 | 9 | Remapped | NW_003871077.1 |
| NW_003871078.1 | Chr11|NW_003871078.1 | 11 | 11 | Remapped | NW_003871078.1 |
| NW_003871079.1 | Chr11|NW_003871079.1 | 1 | 2 | Remapped | NW_003871079.1 |
| NW_003871080.1 | Chr11|NW_003871080.1 | 4 | 5 | Remapped | NW_003871080.1 |
| NW_003871081.1 | Chr11|NW_003871081.1 | 3 | 3 | Remapped | NW_003871081.1 |
| NW_003871082.1 | Chr11|NW_003871082.1 | 3 | 3 | Remapped | NW_003871082.1 |
| NW_004070871.1 | Chr11|NW_004070871.1 | 48 | 55 | Remapped | NW_004070871.1 |
| NW_003315937.1 | Chr12|NW_003315937.1 | 110 | 118 | Remapped | NW_003315937.1 |
| NW_003571048.1 | Chr12|NW_003571048.1 | 19 | 20 | Remapped | NW_003571048.1 |
| NW_003871083.2 | Chr12|NW_003871083.2 | 5 | 6 | Remapped | NW_003871083.2 |
| NW_004504303.2 | Chr12|NW_004504303.2 | 4 | 4 | Remapped | NW_004504303.2 |
| NW_003571051.1 | Chr13|NW_003571051.1 | 3 | 3 | Remapped | NW_003571051.1 |
| NW_004166863.1 | Chr14|NW_004166863.1 | 123 | 136 | Remapped | NW_004166863.1 |
| NW_003871084.1 | Chr15|NW_003871084.1 | 5 | 10 | Remapped | NW_003871084.1 |
| NW_003871085.1 | Chr16|NW_003871085.1 | 1 | 1 | Remapped | NW_003871085.1 |
| NW_003315947.1 | Chr17|NW_003315947.1 | 14 | 16 | Remapped | NW_003315947.1 |
| NW_003315948.2 | Chr17|NW_003315948.2 | 2 | 2 | Remapped | NW_003315948.2 |
| NW_003315949.1 | Chr17|NW_003315949.1 | 9 | 9 | Remapped | NW_003315949.1 |
| NW_003315950.2 | Chr17|NW_003315950.2 | 41 | 42 | Remapped | NW_003315950.2 |
| NW_003315951.1 | Chr17|NW_003315951.1 | 29 | 29 | Remapped | NW_003315951.1 |
| NW_003571052.1 | Chr17|NW_003571052.1 | 6 | 7 | Remapped | NW_003571052.1 |
| NW_003871087.1 | Chr17|NW_003871087.1 | 14 | 14 | Remapped | NW_003871087.1 |
| NW_003871088.1 | Chr17|NW_003871088.1 | 13 | 13 | Remapped | NW_003871088.1 |
| NW_003871089.1 | Chr17|NW_003871089.1 | 59 | 59 | Remapped | NW_003871089.1 |
| NW_003871090.1 | Chr17|NW_003871090.1 | 2 | 2 | Remapped | NW_003871090.1 |
| NW_004070872.2 | Chr17|NW_004070872.2 | 221 | 226 | Remapped | NW_004070872.2 |
| NW_004166864.2 | Chr17|NW_004166864.2 | 2 | 2 | Remapped | NW_004166864.2 |
| NW_004775433.1 | Chr17|NW_004775433.1 | 35 | 37 | Remapped | NW_004775433.1 |
| NW_003571053.2 | Chr19|NW_003571053.2 | 8 | 8 | Remapped | NW_003571053.2 |
| NW_003871094.1 | Chr19|NW_003871094.1 | 37 | 43 | Remapped | NW_003871094.1 |
| NW_004166865.1 | Chr19|NW_004166865.1 | 123 | 127 | Remapped | NW_004166865.1 |
| NW_004775434.1 | Chr19|NW_004775434.1 | 32 | 32 | Remapped | NW_004775434.1 |
| NW_003571063.2 | Chr20|NW_003571063.2 | 35 | 39 | Remapped | NW_003571063.2 |
| NW_003871095.1 | Chr20|NW_003871095.1 | 1 | 1 | Remapped | NW_003871095.1 |
| NW_004504304.1 | Chr20|NW_004504304.1 | 29 | 31 | Remapped | NW_004504304.1 |
| NT_113950.2 | Chr21|NT_113950.2 | 1 | 1 | Remapped | NT_113950.2 |
| NW_004775435.1 | Chr21|NW_004775435.1 | 67 | 68 | Remapped | NW_004775435.1 |
| NT_113961.1 | Chr22|NT_113961.1 | 5 | 5 | Remapped | NT_113961.1 |
| NW_003871096.1 | Chr22|NW_003871096.1 | 4 | 7 | Remapped | NW_003871096.1 |
| NW_004070873.1 | Chr22|NW_004070873.1 | 2 | 2 | Remapped | NW_004070873.1 |
| NW_004070874.1 | Chr22|NW_004070874.1 | 18 | 18 | Remapped | NW_004070874.1 |
| NW_004070875.1 | Chr22|NW_004070875.1 | 8 | 8 | Remapped | NW_004070875.1 |
| NW_004070876.1 | Chr22|NW_004070876.1 | 1 | 1 | Remapped | NW_004070876.1 |
| NT_167212.1 | Chr22|NT_167212.1 | 13 | 13 | Remapped | NT_167212.1 |
| NT_167234.1 | Chr22|NT_167234.1 | 1 | 1 | Remapped | NT_167234.1 |
| NT_167235.1 | Chr22|NT_167235.1 | 5 | 5 | Remapped | NT_167235.1 |
| NT_167238.1 | Chr22|NT_167238.1 | 1 | 1 | Remapped | NT_167238.1 |
| NW_003571064.2 | ChrX|NW_003571064.2 | 158 | 169 | Remapped | NW_003571064.2 |
| NW_003871098.1 | ChrX|NW_003871098.1 | 24 | 27 | Remapped | NW_003871098.1 |
| NW_003871099.1 | ChrX|NW_003871099.1 | 2 | 2 | Remapped | NW_003871099.1 |
| NW_003871100.1 | ChrX|NW_003871100.1 | 11 | 11 | Remapped | NW_003871100.1 |
| NW_003871101.3 | ChrX|NW_003871101.3 | 3 | 3 | Remapped | NW_003871101.3 |
| NW_003871103.3 | ChrX|NW_003871103.3 | 45 | 47 | Remapped | NW_003871103.3 |
| NW_004070877.1 | ChrX|NW_004070877.1 | 38 | 39 | Remapped | NW_004070877.1 |
| NW_004070878.1 | ChrX|NW_004070878.1 | 12 | 12 | Remapped | NW_004070878.1 |
| NW_004070879.1 | ChrX|NW_004070879.1 | 4 | 5 | Remapped | NW_004070879.1 |
| NW_004070880.2 | ChrX|NW_004070880.2 | 37 | 39 | Remapped | NW_004070880.2 |
| NW_004070881.1 | ChrX|NW_004070881.1 | 8 | 8 | Remapped | NW_004070881.1 |
| NW_004070882.1 | ChrX|NW_004070882.1 | 6 | 6 | Remapped | NW_004070882.1 |
| NW_004070883.1 | ChrX|NW_004070883.1 | 11 | 11 | Remapped | NW_004070883.1 |
| NW_004070884.1 | ChrX|NW_004070884.1 | 4 | 4 | Remapped | NW_004070884.1 |
| NW_004070885.1 | ChrX|NW_004070885.1 | 8 | 8 | Remapped | NW_004070885.1 |
| NW_004070886.1 | ChrX|NW_004070886.1 | 6 | 8 | Remapped | NW_004070886.1 |
| NW_004070887.1 | ChrX|NW_004070887.1 | 21 | 21 | Remapped | NW_004070887.1 |
| NW_004070888.1 | ChrX|NW_004070888.1 | 23 | 24 | Remapped | NW_004070888.1 |
| NW_004070889.1 | ChrX|NW_004070889.1 | 16 | 16 | Remapped | NW_004070889.1 |
| NW_004070890.2 | ChrX|NW_004070890.2 | 163 | 177 | Remapped | NW_004070890.2 |
| NW_004070891.1 | ChrX|NW_004070891.1 | 57 | 57 | Remapped | NW_004070891.1 |
| NW_004070892.1 | ChrX|NW_004070892.1 | 16 | 16 | Remapped | NW_004070892.1 |
| NW_004070893.1 | ChrX|NW_004070893.1 | 3 | 3 | Remapped | NW_004070893.1 |
| NW_004166866.1 | ChrX|NW_004166866.1 | 19 | 19 | Remapped | NW_004166866.1 |
| Variant Region remap status | Variant Call remap status | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
| NC_000001.11 | Chr1 | 5,637 | 5,436 | 14 | 7 | 35 | 145 | 6,006 | 5,795 | 14 | 7 | 35 | 155 |
| NC_000002.12 | Chr2 | 7,096 | 6,968 | 8 | 29 | 69 | 22 | 7,455 | 7,323 | 8 | 29 | 72 | 23 |
| NC_000003.12 | Chr3 | 4,785 | 4,719 | 7 | 6 | 33 | 20 | 5,124 | 5,054 | 7 | 6 | 33 | 24 |
| NC_000004.12 | Chr4 | 5,764 | 5,652 | 3 | 0 | 67 | 42 | 6,108 | 5,986 | 3 | 0 | 77 | 42 |
| NC_000005.10 | Chr5 | 4,849 | 4,797 | 0 | 0 | 49 | 3 | 5,073 | 5,021 | 0 | 0 | 49 | 3 |
| NC_000006.12 | Chr6 | 4,785 | 4,583 | 8 | 5 | 135 | 54 | 5,107 | 4,894 | 8 | 5 | 142 | 58 |
| NC_000007.14 | Chr7 | 6,073 | 5,843 | 17 | 24 | 49 | 140 | 6,439 | 6,201 | 17 | 24 | 49 | 148 |
| NC_000008.11 | Chr8 | 4,712 | 4,559 | 13 | 26 | 20 | 94 | 4,991 | 4,835 | 13 | 26 | 20 | 97 |
| NC_000009.12 | Chr9 | 3,047 | 2,930 | 1 | 9 | 23 | 84 | 3,256 | 3,135 | 1 | 9 | 23 | 88 |
| NC_000010.11 | Chr10 | 4,850 | 4,599 | 4 | 2 | 131 | 114 | 5,125 | 4,869 | 4 | 2 | 135 | 115 |
| NC_000011.10 | Chr11 | 3,854 | 3,677 | 5 | 6 | 54 | 112 | 4,103 | 3,912 | 5 | 6 | 54 | 126 |
| NC_000012.12 | Chr12 | 4,133 | 3,988 | 0 | 0 | 26 | 119 | 4,405 | 4,250 | 0 | 0 | 26 | 129 |
| NC_000013.11 | Chr13 | 3,265 | 3,184 | 0 | 0 | 80 | 1 | 3,501 | 3,419 | 0 | 0 | 81 | 1 |
| NC_000014.9 | Chr14 | 2,235 | 2,174 | 7 | 6 | 9 | 39 | 2,364 | 2,301 | 7 | 6 | 9 | 41 |
| NC_000015.10 | Chr15 | 2,106 | 2,074 | 3 | 11 | 13 | 5 | 2,208 | 2,171 | 3 | 11 | 13 | 10 |
| NC_000016.10 | Chr16 | 3,352 | 3,285 | 9 | 15 | 42 | 1 | 3,511 | 3,444 | 9 | 15 | 42 | 1 |
| NC_000017.11 | Chr17 | 3,249 | 3,079 | 3 | 12 | 45 | 110 | 3,419 | 3,240 | 3 | 12 | 50 | 114 |
| NC_000018.10 | Chr18 | 2,690 | 2,673 | 0 | 0 | 17 | 0 | 2,874 | 2,857 | 0 | 0 | 17 | 0 |
| NC_000019.10 | Chr19 | 2,998 | 2,917 | 4 | 9 | 2 | 66 | 3,155 | 3,070 | 4 | 9 | 2 | 70 |
| NC_000020.11 | Chr20 | 2,518 | 2,298 | 4 | 8 | 154 | 54 | 2,685 | 2,453 | 4 | 8 | 161 | 59 |
| NC_000021.9 | Chr21 | 1,986 | 1,848 | 6 | 9 | 56 | 67 | 2,108 | 1,969 | 6 | 9 | 56 | 68 |
| NC_000022.11 | Chr22 | 1,952 | 1,849 | 10 | 41 | 45 | 7 | 2,070 | 1,961 | 10 | 41 | 48 | 10 |
| NC_000023.11 | ChrX | 3,791 | 3,089 | 5 | 2 | 65 | 630 | 4,047 | 3,307 | 5 | 2 | 71 | 662 |
| NC_000024.10 | ChrY | 92 | 83 | 0 | 0 | 9 | 0 | 95 | 84 | 0 | 0 | 11 | 0 |
Samplesets
Number of Samplesets: 1
- Name:
- SABE_cohort
- Description:
- Brazilian admixed elderly from census-based sample (n=1171, São Paulo)
- Size:
- 1,171 (sample data not available)
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- None reported
Experimental Details
| Experiment ID | Type | Method | Analysis | Number of Variant Calls |
|---|---|---|---|---|
| 1 | Discovery | Sequencing | Sequence alignment | 95,229 |