nstd212 (Wu et al. 2021)
- Organism:
- Human
- Study Type:
- Control Set
- Submitter:
- Zehang Jiang
- Description:
- We perform whole-genome long-read sequencing (LRS) for 405 unrelated Chinese and discover a landscape of 132,312 non-redundant SVs, of which 45.2% are novel. To obtain reliable SVs, we used three SV callers, Sniffles, NanoVar and NanoSV, all of which were specifically designed for SV detection from LRS. We retained the SVs identified by at least two callers, which could effectively reduce the false positive of SV detection, particularly for sequencing data with lower depth. Finally, we merged the SVs detected from all the samples for each SV type and constructed a set of 132,312 non-redundant SVs, comprising 67,405 deletions (DELs), 60,182 insertions (INSs), 3,956 duplications (DUPs) and 769 inversions (INVs). See Variant Summary counts for nstd212 in dbVar Variant Summary.
- Publication(s):
- Wu et al. 2021
Detailed Information: Download 132198 Variant Regions, Download 132312 Variant Calls, Download Both, FTP
Variant Summary
Assembly used for analysis:
Submitted: GRCh38 (hg38)
Remapped: GRCh37.p13 (hg19)
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.11 | Chr1 | 9,001 | 9,012 | Submitted | NC_000001.11 |
| NC_000002.12 | Chr2 | 10,392 | 10,396 | Submitted | NC_000002.12 |
| NC_000003.12 | Chr3 | 7,125 | 7,127 | Submitted | NC_000003.12 |
| NC_000004.12 | Chr4 | 7,814 | 7,821 | Submitted | NC_000004.12 |
| NC_000005.10 | Chr5 | 7,216 | 7,221 | Submitted | NC_000005.10 |
| NC_000006.12 | Chr6 | 7,391 | 7,401 | Submitted | NC_000006.12 |
| NC_000007.14 | Chr7 | 8,466 | 8,470 | Submitted | NC_000007.14 |
| NC_000008.11 | Chr8 | 6,413 | 6,418 | Submitted | NC_000008.11 |
| NC_000009.12 | Chr9 | 5,346 | 5,352 | Submitted | NC_000009.12 |
| NC_000010.11 | Chr10 | 6,282 | 6,290 | Submitted | NC_000010.11 |
| NC_000011.10 | Chr11 | 5,574 | 5,576 | Submitted | NC_000011.10 |
| NC_000012.12 | Chr12 | 6,006 | 6,015 | Submitted | NC_000012.12 |
| NC_000013.11 | Chr13 | 4,301 | 4,306 | Submitted | NC_000013.11 |
| NC_000014.9 | Chr14 | 3,530 | 3,531 | Submitted | NC_000014.9 |
| NC_000015.10 | Chr15 | 3,371 | 3,373 | Submitted | NC_000015.10 |
| NC_000016.10 | Chr16 | 4,734 | 4,737 | Submitted | NC_000016.10 |
| NC_000017.11 | Chr17 | 5,080 | 5,084 | Submitted | NC_000017.11 |
| NC_000018.10 | Chr18 | 3,645 | 3,646 | Submitted | NC_000018.10 |
| NC_000019.10 | Chr19 | 4,952 | 4,959 | Submitted | NC_000019.10 |
| NC_000020.11 | Chr20 | 3,518 | 3,521 | Submitted | NC_000020.11 |
| NC_000021.9 | Chr21 | 2,753 | 2,757 | Submitted | NC_000021.9 |
| NC_000022.11 | Chr22 | 2,981 | 2,983 | Submitted | NC_000022.11 |
| NC_000023.11 | ChrX | 6,307 | 6,316 | Submitted | NC_000023.11 |
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.10 | Chr1 | 8,498 | 8,508 | Remapped | NC_000001.10 |
| NC_000002.11 | Chr2 | 10,167 | 10,171 | Remapped | NC_000002.11 |
| NC_000003.11 | Chr3 | 6,978 | 6,980 | Remapped | NC_000003.11 |
| NC_000004.11 | Chr4 | 7,767 | 7,774 | Remapped | NC_000004.11 |
| NC_000005.9 | Chr5 | 7,194 | 7,199 | Remapped | NC_000005.9 |
| NC_000006.11 | Chr6 | 7,204 | 7,214 | Remapped | NC_000006.11 |
| NC_000007.13 | Chr7 | 8,248 | 8,252 | Remapped | NC_000007.13 |
| NC_000008.10 | Chr8 | 6,241 | 6,246 | Remapped | NC_000008.10 |
| NC_000009.11 | Chr9 | 5,201 | 5,205 | Remapped | NC_000009.11 |
| NC_000010.10 | Chr10 | 5,959 | 5,967 | Remapped | NC_000010.10 |
| NC_000011.9 | Chr11 | 5,457 | 5,459 | Remapped | NC_000011.9 |
| NC_000012.11 | Chr12 | 5,862 | 5,871 | Remapped | NC_000012.11 |
| NC_000013.10 | Chr13 | 4,217 | 4,222 | Remapped | NC_000013.10 |
| NC_000014.8 | Chr14 | 3,374 | 3,375 | Remapped | NC_000014.8 |
| NC_000015.9 | Chr15 | 3,342 | 3,344 | Remapped | NC_000015.9 |
| NC_000016.9 | Chr16 | 4,726 | 4,729 | Remapped | NC_000016.9 |
| NC_000017.10 | Chr17 | 4,596 | 4,600 | Remapped | NC_000017.10 |
| NC_000018.9 | Chr18 | 3,598 | 3,599 | Remapped | NC_000018.9 |
| NC_000019.9 | Chr19 | 4,721 | 4,728 | Remapped | NC_000019.9 |
| NC_000020.10 | Chr20 | 3,283 | 3,286 | Remapped | NC_000020.10 |
| NC_000021.8 | Chr21 | 2,384 | 2,388 | Remapped | NC_000021.8 |
| NC_000022.10 | Chr22 | 2,613 | 2,615 | Remapped | NC_000022.10 |
| NC_000023.10 | ChrX | 6,058 | 6,067 | Remapped | NC_000023.10 |
| NC_000024.9 | ChrY | 2 | 2 | Remapped | NC_000024.9 |
| NT_113923.1 | Unplaced|NT_113923.1 | 40 | 40 | Remapped | NT_113923.1 |
| NT_167216.1 | Unplaced|NT_167216.1 | 1 | 1 | Remapped | NT_167216.1 |
| NT_167222.1 | Unplaced|NT_167222.1 | 9 | 9 | Remapped | NT_167222.1 |
| NT_167227.1 | Unplaced|NT_167227.1 | 7 | 7 | Remapped | NT_167227.1 |
| NT_113889.1 | Unplaced|NT_113889.1 | 4 | 4 | Remapped | NT_113889.1 |
| NT_167214.1 | Unplaced|NT_167214.1 | 32 | 32 | Remapped | NT_167214.1 |
| NT_167213.1 | Unplaced|NT_167213.1 | 1 | 1 | Remapped | NT_167213.1 |
| NT_167225.1 | Unplaced|NT_167225.1 | 5 | 5 | Remapped | NT_167225.1 |
| NT_167226.1 | Unplaced|NT_167226.1 | 10 | 10 | Remapped | NT_167226.1 |
| NT_167229.1 | Unplaced|NT_167229.1 | 1 | 1 | Remapped | NT_167229.1 |
| NT_167211.1 | Unplaced|NT_167211.1 | 22 | 22 | Remapped | NT_167211.1 |
| NT_167223.1 | Unplaced|NT_167223.1 | 2 | 2 | Remapped | NT_167223.1 |
| NT_167224.1 | Unplaced|NT_167224.1 | 1 | 1 | Remapped | NT_167224.1 |
| NT_167231.1 | Unplaced|NT_167231.1 | 3 | 3 | Remapped | NT_167231.1 |
| NT_167233.1 | Unplaced|NT_167233.1 | 23 | 23 | Remapped | NT_167233.1 |
| NT_167237.1 | Unplaced|NT_167237.1 | 4 | 4 | Remapped | NT_167237.1 |
| NT_167209.1 | Unplaced|NT_167209.1 | 1 | 1 | Remapped | NT_167209.1 |
| NT_167207.1 | Chr1|NT_167207.1 | 9 | 9 | Remapped | NT_167207.1 |
| NW_003315903.1 | Chr1|NW_003315903.1 | 28 | 28 | Remapped | NW_003315903.1 |
| NW_003315904.1 | Chr1|NW_003315904.1 | 13 | 13 | Remapped | NW_003315904.1 |
| NW_003571030.1 | Chr1|NW_003571030.1 | 14 | 14 | Remapped | NW_003571030.1 |
| NW_003871055.3 | Chr1|NW_003871055.3 | 525 | 526 | Remapped | NW_003871055.3 |
| NW_003871056.3 | Chr1|NW_003871056.3 | 56 | 56 | Remapped | NW_003871056.3 |
| NW_003871057.1 | Chr1|NW_003871057.1 | 18 | 18 | Remapped | NW_003871057.1 |
| NW_004070863.1 | Chr1|NW_004070863.1 | 2 | 2 | Remapped | NW_004070863.1 |
| NW_004070864.2 | Chr1|NW_004070864.2 | 3 | 3 | Remapped | NW_004070864.2 |
| NW_004070865.1 | Chr1|NW_004070865.1 | 5 | 5 | Remapped | NW_004070865.1 |
| NW_003571031.1 | Chr2|NW_003571031.1 | 24 | 24 | Remapped | NW_003571031.1 |
| NW_003571032.1 | Chr2|NW_003571032.1 | 9 | 9 | Remapped | NW_003571032.1 |
| NW_004504299.1 | Chr2|NW_004504299.1 | 17 | 17 | Remapped | NW_004504299.1 |
| NW_003315910.1 | Chr3|NW_003315910.1 | 2 | 2 | Remapped | NW_003315910.1 |
| NW_003315911.1 | Chr3|NW_003315911.1 | 4 | 4 | Remapped | NW_003315911.1 |
| NW_003315912.1 | Chr3|NW_003315912.1 | 5 | 5 | Remapped | NW_003315912.1 |
| NW_003871058.1 | Chr3|NW_003871058.1 | 17 | 17 | Remapped | NW_003871058.1 |
| NW_003871059.1 | Chr3|NW_003871059.1 | 7 | 7 | Remapped | NW_003871059.1 |
| NW_003871060.1 | Chr3|NW_003871060.1 | 14 | 14 | Remapped | NW_003871060.1 |
| NW_004775426.1 | Chr3|NW_004775426.1 | 6 | 6 | Remapped | NW_004775426.1 |
| NT_113885.1 | Chr4|NT_113885.1 | 20 | 20 | Remapped | NT_113885.1 |
| NT_113888.1 | Chr4|NT_113888.1 | 1 | 1 | Remapped | NT_113888.1 |
| NW_003571034.1 | Chr4|NW_003571034.1 | 50 | 50 | Remapped | NW_003571034.1 |
| NW_003571035.1 | Chr4|NW_003571035.1 | 18 | 19 | Remapped | NW_003571035.1 |
| NW_004775427.1 | Chr4|NW_004775427.1 | 27 | 27 | Remapped | NW_004775427.1 |
| NW_003871061.1 | Chr5|NW_003871061.1 | 3 | 3 | Remapped | NW_003871061.1 |
| NW_004775428.1 | Chr5|NW_004775428.1 | 7 | 7 | Remapped | NW_004775428.1 |
| NT_167246.1 | Chr6|NT_167246.1 | 7 | 7 | Remapped | NT_167246.1 |
| NT_167248.1 | Chr6|NT_167248.1 | 7 | 7 | Remapped | NT_167248.1 |
| NT_167249.1 | Chr6|NT_167249.1 | 3 | 3 | Remapped | NT_167249.1 |
| NW_003871062.1 | Chr6|NW_003871062.1 | 6 | 6 | Remapped | NW_003871062.1 |
| NW_004070866.1 | Chr6|NW_004070866.1 | 26 | 26 | Remapped | NW_004070866.1 |
| NW_004166862.1 | Chr6|NW_004166862.1 | 2 | 2 | Remapped | NW_004166862.1 |
| NW_004504300.1 | Chr6|NW_004504300.1 | 29 | 29 | Remapped | NW_004504300.1 |
| NW_004775429.1 | Chr6|NW_004775429.1 | 24 | 24 | Remapped | NW_004775429.1 |
| NT_113901.1 | Chr7|NT_113901.1 | 4 | 4 | Remapped | NT_113901.1 |
| NW_003571037.1 | Chr7|NW_003571037.1 | 22 | 22 | Remapped | NW_003571037.1 |
| NW_003571038.1 | Chr7|NW_003571038.1 | 35 | 35 | Remapped | NW_003571038.1 |
| NW_003571039.1 | Chr7|NW_003571039.1 | 36 | 36 | Remapped | NW_003571039.1 |
| NW_003571040.1 | Chr7|NW_003571040.1 | 59 | 59 | Remapped | NW_003571040.1 |
| NW_003571041.1 | Chr7|NW_003571041.1 | 12 | 12 | Remapped | NW_003571041.1 |
| NW_003871064.1 | Chr7|NW_003871064.1 | 199 | 199 | Remapped | NW_003871064.1 |
| NW_003871065.1 | Chr7|NW_003871065.1 | 17 | 17 | Remapped | NW_003871065.1 |
| NW_004775430.1 | Chr7|NW_004775430.1 | 15 | 15 | Remapped | NW_004775430.1 |
| NW_003315923.1 | Chr8|NW_003315923.1 | 88 | 88 | Remapped | NW_003315923.1 |
| NW_003315924.1 | Chr8|NW_003315924.1 | 46 | 46 | Remapped | NW_003315924.1 |
| NW_003571042.1 | Chr8|NW_003571042.1 | 90 | 90 | Remapped | NW_003571042.1 |
| NW_003871066.2 | Chr8|NW_003871066.2 | 13 | 13 | Remapped | NW_003871066.2 |
| NW_004775431.1 | Chr8|NW_004775431.1 | 2 | 2 | Remapped | NW_004775431.1 |
| NT_113914.1 | Chr9|NT_113914.1 | 5 | 5 | Remapped | NT_113914.1 |
| NT_113916.2 | Chr9|NT_113916.2 | 77 | 78 | Remapped | NT_113916.2 |
| NW_003315925.1 | Chr9|NW_003315925.1 | 32 | 32 | Remapped | NW_003315925.1 |
| NW_003315926.1 | Chr9|NW_003315926.1 | 12 | 12 | Remapped | NW_003315926.1 |
| NW_003315927.1 | Chr9|NW_003315927.1 | 14 | 14 | Remapped | NW_003315927.1 |
| NW_003871067.1 | Chr9|NW_003871067.1 | 33 | 33 | Remapped | NW_003871067.1 |
| NW_004070867.1 | Chr9|NW_004070867.1 | 10 | 10 | Remapped | NW_004070867.1 |
| NW_004070868.1 | Chr9|NW_004070868.1 | 18 | 18 | Remapped | NW_004070868.1 |
| NW_004070869.1 | Chr9|NW_004070869.1 | 17 | 17 | Remapped | NW_004070869.1 |
| NW_004504301.1 | Chr9|NW_004504301.1 | 11 | 11 | Remapped | NW_004504301.1 |
| NW_003315932.1 | Chr10|NW_003315932.1 | 18 | 18 | Remapped | NW_003315932.1 |
| NW_003315933.1 | Chr10|NW_003315933.1 | 6 | 6 | Remapped | NW_003315933.1 |
| NW_003571043.1 | Chr10|NW_003571043.1 | 11 | 11 | Remapped | NW_003571043.1 |
| NW_003871068.1 | Chr10|NW_003871068.1 | 107 | 107 | Remapped | NW_003871068.1 |
| NW_003871069.1 | Chr10|NW_003871069.1 | 6 | 6 | Remapped | NW_003871069.1 |
| NW_003871070.1 | Chr10|NW_003871070.1 | 5 | 5 | Remapped | NW_003871070.1 |
| NW_003871071.1 | Chr10|NW_003871071.1 | 45 | 45 | Remapped | NW_003871071.1 |
| NW_004070870.1 | Chr10|NW_004070870.1 | 59 | 59 | Remapped | NW_004070870.1 |
| NW_004504302.1 | Chr10|NW_004504302.1 | 15 | 15 | Remapped | NW_004504302.1 |
| NW_004775432.1 | Chr10|NW_004775432.1 | 13 | 13 | Remapped | NW_004775432.1 |
| NT_113921.2 | Chr11|NT_113921.2 | 4 | 4 | Remapped | NT_113921.2 |
| NW_003571045.1 | Chr11|NW_003571045.1 | 5 | 5 | Remapped | NW_003571045.1 |
| NW_003571046.1 | Chr11|NW_003571046.1 | 27 | 27 | Remapped | NW_003571046.1 |
| NW_003871072.2 | Chr11|NW_003871072.2 | 13 | 13 | Remapped | NW_003871072.2 |
| NW_003871075.1 | Chr11|NW_003871075.1 | 16 | 16 | Remapped | NW_003871075.1 |
| NW_003871076.1 | Chr11|NW_003871076.1 | 2 | 2 | Remapped | NW_003871076.1 |
| NW_003871077.1 | Chr11|NW_003871077.1 | 5 | 5 | Remapped | NW_003871077.1 |
| NW_003871078.1 | Chr11|NW_003871078.1 | 7 | 7 | Remapped | NW_003871078.1 |
| NW_003871079.1 | Chr11|NW_003871079.1 | 6 | 6 | Remapped | NW_003871079.1 |
| NW_003871080.1 | Chr11|NW_003871080.1 | 7 | 7 | Remapped | NW_003871080.1 |
| NW_003871081.1 | Chr11|NW_003871081.1 | 7 | 7 | Remapped | NW_003871081.1 |
| NW_003871082.1 | Chr11|NW_003871082.1 | 3 | 3 | Remapped | NW_003871082.1 |
| NW_004070871.1 | Chr11|NW_004070871.1 | 59 | 59 | Remapped | NW_004070871.1 |
| NW_003315937.1 | Chr12|NW_003315937.1 | 170 | 170 | Remapped | NW_003315937.1 |
| NW_003571048.1 | Chr12|NW_003571048.1 | 34 | 34 | Remapped | NW_003571048.1 |
| NW_003871083.2 | Chr12|NW_003871083.2 | 13 | 13 | Remapped | NW_003871083.2 |
| NW_004504303.2 | Chr12|NW_004504303.2 | 17 | 17 | Remapped | NW_004504303.2 |
| NW_003571051.1 | Chr13|NW_003571051.1 | 9 | 9 | Remapped | NW_003571051.1 |
| NW_004166863.1 | Chr14|NW_004166863.1 | 202 | 202 | Remapped | NW_004166863.1 |
| NW_003871084.1 | Chr15|NW_003871084.1 | 9 | 9 | Remapped | NW_003871084.1 |
| NW_003871085.1 | Chr16|NW_003871085.1 | 4 | 4 | Remapped | NW_003871085.1 |
| NT_113930.1 | Chr17|NT_113930.1 | 4 | 4 | Remapped | NT_113930.1 |
| NT_113943.1 | Chr17|NT_113943.1 | 5 | 5 | Remapped | NT_113943.1 |
| NW_003315947.1 | Chr17|NW_003315947.1 | 21 | 21 | Remapped | NW_003315947.1 |
| NW_003315948.2 | Chr17|NW_003315948.2 | 4 | 4 | Remapped | NW_003315948.2 |
| NW_003315949.1 | Chr17|NW_003315949.1 | 16 | 16 | Remapped | NW_003315949.1 |
| NW_003315950.2 | Chr17|NW_003315950.2 | 57 | 57 | Remapped | NW_003315950.2 |
| NW_003315951.1 | Chr17|NW_003315951.1 | 31 | 31 | Remapped | NW_003315951.1 |
| NW_003571052.1 | Chr17|NW_003571052.1 | 13 | 13 | Remapped | NW_003571052.1 |
| NW_003871087.1 | Chr17|NW_003871087.1 | 24 | 24 | Remapped | NW_003871087.1 |
| NW_003871088.1 | Chr17|NW_003871088.1 | 23 | 23 | Remapped | NW_003871088.1 |
| NW_003871089.1 | Chr17|NW_003871089.1 | 45 | 45 | Remapped | NW_003871089.1 |
| NW_003871090.1 | Chr17|NW_003871090.1 | 7 | 7 | Remapped | NW_003871090.1 |
| NW_004070872.2 | Chr17|NW_004070872.2 | 365 | 365 | Remapped | NW_004070872.2 |
| NW_004166864.2 | Chr17|NW_004166864.2 | 4 | 4 | Remapped | NW_004166864.2 |
| NW_004775433.1 | Chr17|NW_004775433.1 | 10 | 10 | Remapped | NW_004775433.1 |
| NW_003571053.2 | Chr19|NW_003571053.2 | 41 | 41 | Remapped | NW_003571053.2 |
| NW_003871094.1 | Chr19|NW_003871094.1 | 27 | 27 | Remapped | NW_003871094.1 |
| NW_004166865.1 | Chr19|NW_004166865.1 | 210 | 210 | Remapped | NW_004166865.1 |
| NW_004775434.1 | Chr19|NW_004775434.1 | 29 | 29 | Remapped | NW_004775434.1 |
| NW_003571063.2 | Chr20|NW_003571063.2 | 26 | 26 | Remapped | NW_003571063.2 |
| NW_003871095.1 | Chr20|NW_003871095.1 | 5 | 5 | Remapped | NW_003871095.1 |
| NW_004504304.1 | Chr20|NW_004504304.1 | 27 | 27 | Remapped | NW_004504304.1 |
| NW_003315968.1 | Chr21|NW_003315968.1 | 2 | 2 | Remapped | NW_003315968.1 |
| NW_004775435.1 | Chr21|NW_004775435.1 | 47 | 47 | Remapped | NW_004775435.1 |
| NT_113961.1 | Chr22|NT_113961.1 | 9 | 9 | Remapped | NT_113961.1 |
| NW_003315972.1 | Chr22|NW_003315972.1 | 5 | 5 | Remapped | NW_003315972.1 |
| NW_003871096.1 | Chr22|NW_003871096.1 | 15 | 15 | Remapped | NW_003871096.1 |
| NW_004070873.1 | Chr22|NW_004070873.1 | 5 | 5 | Remapped | NW_004070873.1 |
| NW_004070874.1 | Chr22|NW_004070874.1 | 29 | 29 | Remapped | NW_004070874.1 |
| NW_004070875.1 | Chr22|NW_004070875.1 | 28 | 28 | Remapped | NW_004070875.1 |
| NW_004070876.1 | Chr22|NW_004070876.1 | 14 | 14 | Remapped | NW_004070876.1 |
| NT_167212.1 | Chr22|NT_167212.1 | 27 | 27 | Remapped | NT_167212.1 |
| NT_167234.1 | Chr22|NT_167234.1 | 1 | 1 | Remapped | NT_167234.1 |
| NT_167235.1 | Chr22|NT_167235.1 | 3 | 3 | Remapped | NT_167235.1 |
| NW_003571064.2 | ChrX|NW_003571064.2 | 205 | 206 | Remapped | NW_003571064.2 |
| NW_003871098.1 | ChrX|NW_003871098.1 | 25 | 25 | Remapped | NW_003871098.1 |
| NW_003871099.1 | ChrX|NW_003871099.1 | 3 | 3 | Remapped | NW_003871099.1 |
| NW_003871100.1 | ChrX|NW_003871100.1 | 37 | 37 | Remapped | NW_003871100.1 |
| NW_003871101.3 | ChrX|NW_003871101.3 | 18 | 18 | Remapped | NW_003871101.3 |
| NW_003871102.1 | ChrX|NW_003871102.1 | 1 | 1 | Remapped | NW_003871102.1 |
| NW_003871103.3 | ChrX|NW_003871103.3 | 125 | 125 | Remapped | NW_003871103.3 |
| NW_004070877.1 | ChrX|NW_004070877.1 | 156 | 156 | Remapped | NW_004070877.1 |
| NW_004070878.1 | ChrX|NW_004070878.1 | 14 | 14 | Remapped | NW_004070878.1 |
| NW_004070879.1 | ChrX|NW_004070879.1 | 11 | 11 | Remapped | NW_004070879.1 |
| NW_004070880.2 | ChrX|NW_004070880.2 | 80 | 80 | Remapped | NW_004070880.2 |
| NW_004070881.1 | ChrX|NW_004070881.1 | 24 | 24 | Remapped | NW_004070881.1 |
| NW_004070882.1 | ChrX|NW_004070882.1 | 18 | 18 | Remapped | NW_004070882.1 |
| NW_004070883.1 | ChrX|NW_004070883.1 | 7 | 7 | Remapped | NW_004070883.1 |
| NW_004070884.1 | ChrX|NW_004070884.1 | 6 | 6 | Remapped | NW_004070884.1 |
| NW_004070885.1 | ChrX|NW_004070885.1 | 11 | 11 | Remapped | NW_004070885.1 |
| NW_004070886.1 | ChrX|NW_004070886.1 | 24 | 24 | Remapped | NW_004070886.1 |
| NW_004070887.1 | ChrX|NW_004070887.1 | 30 | 30 | Remapped | NW_004070887.1 |
| NW_004070888.1 | ChrX|NW_004070888.1 | 35 | 35 | Remapped | NW_004070888.1 |
| NW_004070889.1 | ChrX|NW_004070889.1 | 38 | 38 | Remapped | NW_004070889.1 |
| NW_004070890.2 | ChrX|NW_004070890.2 | 206 | 207 | Remapped | NW_004070890.2 |
| NW_004070891.1 | ChrX|NW_004070891.1 | 54 | 54 | Remapped | NW_004070891.1 |
| NW_004070892.1 | ChrX|NW_004070892.1 | 26 | 26 | Remapped | NW_004070892.1 |
| NW_004070893.1 | ChrX|NW_004070893.1 | 1 | 1 | Remapped | NW_004070893.1 |
| NW_004166866.1 | ChrX|NW_004166866.1 | 24 | 25 | Remapped | NW_004166866.1 |
| Variant Region remap status | Variant Call remap status | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
| NC_000001.11 | Chr1 | 9,001 | 8,583 | 40 | 13 | 116 | 249 | 9,012 | 8,594 | 40 | 13 | 116 | 249 |
| NC_000002.12 | Chr2 | 10,392 | 10,049 | 42 | 41 | 213 | 47 | 10,396 | 10,053 | 42 | 41 | 213 | 47 |
| NC_000003.12 | Chr3 | 7,125 | 6,913 | 32 | 18 | 128 | 34 | 7,127 | 6,915 | 32 | 18 | 128 | 34 |
| NC_000004.12 | Chr4 | 7,814 | 7,703 | 7 | 3 | 38 | 63 | 7,821 | 7,709 | 7 | 3 | 38 | 64 |
| NC_000005.10 | Chr5 | 7,216 | 7,182 | 1 | 0 | 23 | 10 | 7,221 | 7,187 | 1 | 0 | 23 | 10 |
| NC_000006.12 | Chr6 | 7,391 | 7,096 | 21 | 9 | 177 | 88 | 7,401 | 7,106 | 21 | 9 | 177 | 88 |
| NC_000007.14 | Chr7 | 8,466 | 7,962 | 42 | 42 | 93 | 327 | 8,470 | 7,966 | 42 | 42 | 93 | 327 |
| NC_000008.11 | Chr8 | 6,413 | 6,235 | 17 | 22 | 36 | 103 | 6,418 | 6,240 | 17 | 22 | 36 | 103 |
| NC_000009.12 | Chr9 | 5,346 | 5,142 | 13 | 11 | 63 | 117 | 5,352 | 5,147 | 13 | 11 | 64 | 117 |
| NC_000010.11 | Chr10 | 6,282 | 5,799 | 30 | 17 | 206 | 230 | 6,290 | 5,807 | 30 | 17 | 206 | 230 |
| NC_000011.10 | Chr11 | 5,574 | 5,301 | 11 | 13 | 103 | 146 | 5,576 | 5,303 | 11 | 13 | 103 | 146 |
| NC_000012.12 | Chr12 | 6,006 | 5,723 | 2 | 4 | 92 | 185 | 6,015 | 5,732 | 2 | 4 | 92 | 185 |
| NC_000013.11 | Chr13 | 4,301 | 4,259 | 1 | 3 | 37 | 1 | 4,306 | 4,264 | 1 | 3 | 37 | 1 |
| NC_000014.9 | Chr14 | 3,530 | 3,439 | 13 | 12 | 10 | 56 | 3,531 | 3,440 | 13 | 12 | 10 | 56 |
| NC_000015.10 | Chr15 | 3,371 | 3,315 | 10 | 8 | 29 | 9 | 3,373 | 3,317 | 10 | 8 | 29 | 9 |
| NC_000016.10 | Chr16 | 4,734 | 4,619 | 13 | 11 | 87 | 4 | 4,737 | 4,622 | 13 | 11 | 87 | 4 |
| NC_000017.11 | Chr17 | 5,080 | 4,784 | 23 | 17 | 59 | 197 | 5,084 | 4,788 | 23 | 17 | 59 | 197 |
| NC_000018.10 | Chr18 | 3,645 | 3,589 | 5 | 3 | 48 | 0 | 3,646 | 3,590 | 5 | 3 | 48 | 0 |
| NC_000019.10 | Chr19 | 4,952 | 4,840 | 11 | 7 | 9 | 85 | 4,959 | 4,847 | 11 | 7 | 9 | 85 |
| NC_000020.11 | Chr20 | 3,518 | 3,272 | 12 | 8 | 187 | 39 | 3,521 | 3,275 | 12 | 8 | 187 | 39 |
| NC_000021.9 | Chr21 | 2,753 | 2,380 | 15 | 11 | 300 | 47 | 2,757 | 2,384 | 15 | 11 | 300 | 47 |
| NC_000022.11 | Chr22 | 2,981 | 2,692 | 51 | 37 | 162 | 39 | 2,983 | 2,694 | 51 | 37 | 162 | 39 |
| NC_000023.11 | ChrX | 6,307 | 5,096 | 19 | 10 | 126 | 1,056 | 6,316 | 5,102 | 19 | 10 | 126 | 1,059 |
Samplesets
Number of Samplesets: 1
- Size:
- 405
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- None reported
| Sample ID | Subject ID | Subject Phenotype |
|---|---|---|
| CN109 | CN109 | Not reported |
| CN041 | CN041 | Not reported |
| CN002 | CN002 | Not reported |
| CN100 | CN100 | Not reported |
| CN076 | CN076 | Not reported |
| CN045 | CN045 | Not reported |
| CN103 | CN103 | Not reported |
| CN028 | CN028 | Not reported |
| CN118 | CN118 | Not reported |
| CN019 | CN019 | Not reported |
| CN075 | CN075 | Not reported |
| CN008 | CN008 | Not reported |
| CN074 | CN074 | Not reported |
| CN096 | CN096 | Not reported |
| CN108 | CN108 | Not reported |
| CN094 | CN094 | Not reported |
| CN115 | CN115 | Not reported |
| CN104 | CN104 | Not reported |
| CN087 | CN087 | Not reported |
| CN032 | CN032 | Not reported |
| CN122 | CN122 | Not reported |
| CN106 | CN106 | Not reported |
| CN033 | CN033 | Not reported |
| CN089 | CN089 | Not reported |
| CN114 | CN114 | Not reported |
| CN066 | CN066 | Not reported |
| CN014 | CN014 | Not reported |
| CN005 | CN005 | Not reported |
| CN119 | CN119 | Not reported |
| CN090 | CN090 | Not reported |
| CN099 | CN099 | Not reported |
| CN083 | CN083 | Not reported |
| CN072 | CN072 | Not reported |
| CN007 | CN007 | Not reported |
| CN044 | CN044 | Not reported |
| CN067 | CN067 | Not reported |
| CN018 | CN018 | Not reported |
| CN009 | CN009 | Not reported |
| CN117 | CN117 | Not reported |
| CN071 | CN071 | Not reported |
| CN010 | CN010 | Not reported |
| CN065 | CN065 | Not reported |
| CN077 | CN077 | Not reported |
| CN003 | CN003 | Not reported |
| CN107 | CN107 | Not reported |
| CN121 | CN121 | Not reported |
| CN081 | CN081 | Not reported |
| CN101 | CN101 | Not reported |
| CN113 | CN113 | Not reported |
| CN086 | CN086 | Not reported |
| CN043 | CN043 | Not reported |
| CN123 | CN123 | Not reported |
| CN051 | CN051 | Not reported |
| CN061 | CN061 | Not reported |
| CN078 | CN078 | Not reported |
| CN053 | CN053 | Not reported |
| CN017 | CN017 | Not reported |
| CN120 | CN120 | Not reported |
| CN112 | CN112 | Not reported |
| CN080 | CN080 | Not reported |
| CN006 | CN006 | Not reported |
| CN073 | CN073 | Not reported |
| CN085 | CN085 | Not reported |
| CN042 | CN042 | Not reported |
| CN110 | CN110 | Not reported |
| CN004 | CN004 | Not reported |
| CN016 | CN016 | Not reported |
| CN050 | CN050 | Not reported |
| CN062 | CN062 | Not reported |
| CN069 | CN069 | Not reported |
| CN015 | CN015 | Not reported |
| CN079 | CN079 | Not reported |
| CN063 | CN063 | Not reported |
| CN012 | CN012 | Not reported |
| CN097 | CN097 | Not reported |
| CN091 | CN091 | Not reported |
| CN001 | CN001 | Not reported |
| CN088 | CN088 | Not reported |
| CN111 | CN111 | Not reported |
| CN011 | CN011 | Not reported |
| CN058 | CN058 | Not reported |
| CN070 | CN070 | Not reported |
| CN116 | CN116 | Not reported |
| CN046 | CN046 | Not reported |
| CN037 | CN037 | Not reported |
| CN098 | CN098 | Not reported |
| CN068 | CN068 | Not reported |
| CN038 | CN038 | Not reported |
| CN039 | CN039 | Not reported |
| CN084 | CN084 | Not reported |
| CN124 | CN124 | Not reported |
| CN092 | CN092 | Not reported |
| CN022 | CN022 | Not reported |
| CN105 | CN105 | Not reported |
| CN093 | CN093 | Not reported |
| CN095 | CN095 | Not reported |
| CN082 | CN082 | Not reported |
| CN102 | CN102 | Not reported |
| CN013 | CN013 | Not reported |
| CN047 | CN047 | Not reported |
Experimental Details
| Experiment ID | Type | Method | Analysis | Number of Variant Calls |
|---|---|---|---|---|
| 1 | Discovery | Sequencing | Sequence alignment | 132,312 |