nstd203 (Borges-Monroy et al. 2021)
- Organism:
- Human
- Study Type:
- Collection
- Submitter:
- Rebeca Borges Monroy
- Description:
- In this study we detected polymorphic and de novo retrotransposons within the Simons Simplex Collection to study the role of retrotransposons in Autism Spectrum Disorder. Here, we provide polymorphic Alu, L1, and SVA insertions detected in 4,577 unaffected parental whole-genome sequenced samples of this cohort. These insertions were detected using a novel tool, xTea, which was specifically designed for detecting non-reference retrotransposon insertions with high sensitivity. See Variant Summary counts for nstd203 in dbVar Variant Summary.
- Publication(s):
- Borges-Monroy et al. 2021
Detailed Information: Download 140215 Variant Regions, Download 140215 Variant Calls, Download Both, FTP
Variant Summary
Assembly used for analysis:
Submitted: GRCh38 (hg38)
Remapped: GRCh37.p13 (hg19)
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.11 | Chr1 | 10,590 | 10,590 | Submitted | NC_000001.11 |
| NC_000002.12 | Chr2 | 10,969 | 10,969 | Submitted | NC_000002.12 |
| NC_000003.12 | Chr3 | 9,802 | 9,802 | Submitted | NC_000003.12 |
| NC_000004.12 | Chr4 | 9,091 | 9,091 | Submitted | NC_000004.12 |
| NC_000005.10 | Chr5 | 8,407 | 8,407 | Submitted | NC_000005.10 |
| NC_000006.12 | Chr6 | 9,415 | 9,415 | Submitted | NC_000006.12 |
| NC_000007.14 | Chr7 | 8,230 | 8,230 | Submitted | NC_000007.14 |
| NC_000008.11 | Chr8 | 6,561 | 6,561 | Submitted | NC_000008.11 |
| NC_000009.12 | Chr9 | 5,639 | 5,639 | Submitted | NC_000009.12 |
| NC_000010.11 | Chr10 | 6,280 | 6,280 | Submitted | NC_000010.11 |
| NC_000011.10 | Chr11 | 6,566 | 6,566 | Submitted | NC_000011.10 |
| NC_000012.12 | Chr12 | 7,213 | 7,213 | Submitted | NC_000012.12 |
| NC_000013.11 | Chr13 | 4,971 | 4,971 | Submitted | NC_000013.11 |
| NC_000014.9 | Chr14 | 4,466 | 4,466 | Submitted | NC_000014.9 |
| NC_000015.10 | Chr15 | 4,194 | 4,194 | Submitted | NC_000015.10 |
| NC_000016.10 | Chr16 | 3,611 | 3,611 | Submitted | NC_000016.10 |
| NC_000017.11 | Chr17 | 4,884 | 4,884 | Submitted | NC_000017.11 |
| NC_000018.10 | Chr18 | 3,623 | 3,623 | Submitted | NC_000018.10 |
| NC_000019.10 | Chr19 | 4,140 | 4,140 | Submitted | NC_000019.10 |
| NC_000020.11 | Chr20 | 2,896 | 2,896 | Submitted | NC_000020.11 |
| NC_000021.9 | Chr21 | 1,922 | 1,922 | Submitted | NC_000021.9 |
| NC_000022.11 | Chr22 | 2,022 | 2,022 | Submitted | NC_000022.11 |
| NC_000023.11 | ChrX | 4,610 | 4,610 | Submitted | NC_000023.11 |
| NC_000024.10 | ChrY | 113 | 113 | Submitted | NC_000024.10 |
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.10 | Chr1 | 10,536 | 10,536 | Remapped | NC_000001.10 |
| NC_000002.11 | Chr2 | 10,953 | 10,953 | Remapped | NC_000002.11 |
| NC_000003.11 | Chr3 | 9,751 | 9,751 | Remapped | NC_000003.11 |
| NC_000004.11 | Chr4 | 9,103 | 9,103 | Remapped | NC_000004.11 |
| NC_000005.9 | Chr5 | 8,400 | 8,400 | Remapped | NC_000005.9 |
| NC_000006.11 | Chr6 | 9,371 | 9,371 | Remapped | NC_000006.11 |
| NC_000007.13 | Chr7 | 8,166 | 8,166 | Remapped | NC_000007.13 |
| NC_000008.10 | Chr8 | 6,548 | 6,548 | Remapped | NC_000008.10 |
| NC_000009.11 | Chr9 | 5,642 | 5,642 | Remapped | NC_000009.11 |
| NC_000010.10 | Chr10 | 6,209 | 6,209 | Remapped | NC_000010.10 |
| NC_000011.9 | Chr11 | 6,558 | 6,558 | Remapped | NC_000011.9 |
| NC_000012.11 | Chr12 | 7,207 | 7,207 | Remapped | NC_000012.11 |
| NC_000013.10 | Chr13 | 4,957 | 4,957 | Remapped | NC_000013.10 |
| NC_000014.8 | Chr14 | 4,408 | 4,408 | Remapped | NC_000014.8 |
| NC_000015.9 | Chr15 | 4,181 | 4,181 | Remapped | NC_000015.9 |
| NC_000016.9 | Chr16 | 3,604 | 3,604 | Remapped | NC_000016.9 |
| NC_000017.10 | Chr17 | 4,783 | 4,783 | Remapped | NC_000017.10 |
| NC_000018.9 | Chr18 | 3,618 | 3,618 | Remapped | NC_000018.9 |
| NC_000019.9 | Chr19 | 4,004 | 4,004 | Remapped | NC_000019.9 |
| NC_000020.10 | Chr20 | 2,610 | 2,610 | Remapped | NC_000020.10 |
| NC_000021.8 | Chr21 | 1,871 | 1,871 | Remapped | NC_000021.8 |
| NC_000022.10 | Chr22 | 1,850 | 1,850 | Remapped | NC_000022.10 |
| NC_000023.10 | ChrX | 4,569 | 4,569 | Remapped | NC_000023.10 |
| NC_000024.9 | ChrY | 125 | 125 | Remapped | NC_000024.9 |
| NT_113923.1 | Unplaced|NT_113923.1 | 8 | 8 | Remapped | NT_113923.1 |
| NT_167227.1 | Unplaced|NT_167227.1 | 2 | 2 | Remapped | NT_167227.1 |
| NT_167213.1 | Unplaced|NT_167213.1 | 4 | 4 | Remapped | NT_167213.1 |
| NT_167225.1 | Unplaced|NT_167225.1 | 10 | 10 | Remapped | NT_167225.1 |
| NT_167226.1 | Unplaced|NT_167226.1 | 75 | 75 | Remapped | NT_167226.1 |
| NT_167229.1 | Unplaced|NT_167229.1 | 12 | 12 | Remapped | NT_167229.1 |
| NT_167211.1 | Unplaced|NT_167211.1 | 4 | 4 | Remapped | NT_167211.1 |
| NT_167223.1 | Unplaced|NT_167223.1 | 1 | 1 | Remapped | NT_167223.1 |
| NT_167228.1 | Unplaced|NT_167228.1 | 17 | 17 | Remapped | NT_167228.1 |
| NT_167231.1 | Unplaced|NT_167231.1 | 3 | 3 | Remapped | NT_167231.1 |
| NT_167233.1 | Unplaced|NT_167233.1 | 9 | 9 | Remapped | NT_167233.1 |
| NT_167207.1 | Chr1|NT_167207.1 | 12 | 12 | Remapped | NT_167207.1 |
| NW_003315903.1 | Chr1|NW_003315903.1 | 1 | 1 | Remapped | NW_003315903.1 |
| NW_003315904.1 | Chr1|NW_003315904.1 | 4 | 4 | Remapped | NW_003315904.1 |
| NW_003571030.1 | Chr1|NW_003571030.1 | 9 | 9 | Remapped | NW_003571030.1 |
| NW_003871055.3 | Chr1|NW_003871055.3 | 115 | 115 | Remapped | NW_003871055.3 |
| NW_003871056.3 | Chr1|NW_003871056.3 | 23 | 23 | Remapped | NW_003871056.3 |
| NW_003871057.1 | Chr1|NW_003871057.1 | 25 | 25 | Remapped | NW_003871057.1 |
| NW_004070865.1 | Chr1|NW_004070865.1 | 4 | 4 | Remapped | NW_004070865.1 |
| NW_003571032.1 | Chr2|NW_003571032.1 | 8 | 8 | Remapped | NW_003571032.1 |
| NW_004504299.1 | Chr2|NW_004504299.1 | 26 | 26 | Remapped | NW_004504299.1 |
| NW_003315910.1 | Chr3|NW_003315910.1 | 6 | 6 | Remapped | NW_003315910.1 |
| NW_003315911.1 | Chr3|NW_003315911.1 | 8 | 8 | Remapped | NW_003315911.1 |
| NW_003315912.1 | Chr3|NW_003315912.1 | 2 | 2 | Remapped | NW_003315912.1 |
| NW_003871058.1 | Chr3|NW_003871058.1 | 11 | 11 | Remapped | NW_003871058.1 |
| NW_003871059.1 | Chr3|NW_003871059.1 | 7 | 7 | Remapped | NW_003871059.1 |
| NW_003871060.1 | Chr3|NW_003871060.1 | 1 | 1 | Remapped | NW_003871060.1 |
| NW_004775426.1 | Chr3|NW_004775426.1 | 6 | 6 | Remapped | NW_004775426.1 |
| NT_113885.1 | Chr4|NT_113885.1 | 19 | 19 | Remapped | NT_113885.1 |
| NT_167250.1 | Chr4|NT_167250.1 | 1 | 1 | Remapped | NT_167250.1 |
| NW_003315916.1 | Chr4|NW_003315916.1 | 4 | 4 | Remapped | NW_003315916.1 |
| NW_003571034.1 | Chr4|NW_003571034.1 | 3 | 3 | Remapped | NW_003571034.1 |
| NW_003571035.1 | Chr4|NW_003571035.1 | 5 | 5 | Remapped | NW_003571035.1 |
| NW_004775427.1 | Chr4|NW_004775427.1 | 40 | 40 | Remapped | NW_004775427.1 |
| NT_113948.1 | Chr5|NT_113948.1 | 1 | 1 | Remapped | NT_113948.1 |
| NW_003871061.1 | Chr5|NW_003871061.1 | 14 | 14 | Remapped | NW_003871061.1 |
| NW_004775428.1 | Chr5|NW_004775428.1 | 18 | 18 | Remapped | NW_004775428.1 |
| NT_167246.1 | Chr6|NT_167246.1 | 9 | 9 | Remapped | NT_167246.1 |
| NT_167248.1 | Chr6|NT_167248.1 | 9 | 9 | Remapped | NT_167248.1 |
| NT_167249.1 | Chr6|NT_167249.1 | 1 | 1 | Remapped | NT_167249.1 |
| NW_003871062.1 | Chr6|NW_003871062.1 | 21 | 21 | Remapped | NW_003871062.1 |
| NW_004070866.1 | Chr6|NW_004070866.1 | 5 | 5 | Remapped | NW_004070866.1 |
| NW_004504300.1 | Chr6|NW_004504300.1 | 56 | 56 | Remapped | NW_004504300.1 |
| NW_004775429.1 | Chr6|NW_004775429.1 | 3 | 3 | Remapped | NW_004775429.1 |
| NW_003571037.1 | Chr7|NW_003571037.1 | 25 | 25 | Remapped | NW_003571037.1 |
| NW_003571038.1 | Chr7|NW_003571038.1 | 18 | 18 | Remapped | NW_003571038.1 |
| NW_003571039.1 | Chr7|NW_003571039.1 | 2 | 2 | Remapped | NW_003571039.1 |
| NW_003571040.1 | Chr7|NW_003571040.1 | 42 | 42 | Remapped | NW_003571040.1 |
| NW_003571041.1 | Chr7|NW_003571041.1 | 11 | 11 | Remapped | NW_003571041.1 |
| NW_003871064.1 | Chr7|NW_003871064.1 | 156 | 156 | Remapped | NW_003871064.1 |
| NW_003871065.1 | Chr7|NW_003871065.1 | 32 | 32 | Remapped | NW_003871065.1 |
| NW_004775430.1 | Chr7|NW_004775430.1 | 16 | 16 | Remapped | NW_004775430.1 |
| NW_003315923.1 | Chr8|NW_003315923.1 | 23 | 23 | Remapped | NW_003315923.1 |
| NW_003315924.1 | Chr8|NW_003315924.1 | 27 | 27 | Remapped | NW_003315924.1 |
| NW_003571042.1 | Chr8|NW_003571042.1 | 7 | 7 | Remapped | NW_003571042.1 |
| NW_003871066.2 | Chr8|NW_003871066.2 | 2 | 2 | Remapped | NW_003871066.2 |
| NW_004775431.1 | Chr8|NW_004775431.1 | 6 | 6 | Remapped | NW_004775431.1 |
| NT_113914.1 | Chr9|NT_113914.1 | 1 | 1 | Remapped | NT_113914.1 |
| NT_113916.2 | Chr9|NT_113916.2 | 1 | 1 | Remapped | NT_113916.2 |
| NW_003315925.1 | Chr9|NW_003315925.1 | 13 | 13 | Remapped | NW_003315925.1 |
| NW_003871067.1 | Chr9|NW_003871067.1 | 5 | 5 | Remapped | NW_003871067.1 |
| NW_004070868.1 | Chr9|NW_004070868.1 | 1 | 1 | Remapped | NW_004070868.1 |
| NW_004070869.1 | Chr9|NW_004070869.1 | 1 | 1 | Remapped | NW_004070869.1 |
| NW_004504301.1 | Chr9|NW_004504301.1 | 3 | 3 | Remapped | NW_004504301.1 |
| NW_003315932.1 | Chr10|NW_003315932.1 | 27 | 27 | Remapped | NW_003315932.1 |
| NW_003315933.1 | Chr10|NW_003315933.1 | 2 | 2 | Remapped | NW_003315933.1 |
| NW_003571043.1 | Chr10|NW_003571043.1 | 1 | 1 | Remapped | NW_003571043.1 |
| NW_003871068.1 | Chr10|NW_003871068.1 | 45 | 45 | Remapped | NW_003871068.1 |
| NW_003871069.1 | Chr10|NW_003871069.1 | 1 | 1 | Remapped | NW_003871069.1 |
| NW_003871070.1 | Chr10|NW_003871070.1 | 9 | 9 | Remapped | NW_003871070.1 |
| NW_003871071.1 | Chr10|NW_003871071.1 | 15 | 15 | Remapped | NW_003871071.1 |
| NW_004070870.1 | Chr10|NW_004070870.1 | 2 | 2 | Remapped | NW_004070870.1 |
| NW_004504302.1 | Chr10|NW_004504302.1 | 10 | 10 | Remapped | NW_004504302.1 |
| NW_004775432.1 | Chr10|NW_004775432.1 | 66 | 66 | Remapped | NW_004775432.1 |
| NW_003571045.1 | Chr11|NW_003571045.1 | 8 | 8 | Remapped | NW_003571045.1 |
| NW_003571046.1 | Chr11|NW_003571046.1 | 13 | 13 | Remapped | NW_003571046.1 |
| NW_003871072.2 | Chr11|NW_003871072.2 | 58 | 58 | Remapped | NW_003871072.2 |
| NW_003871075.1 | Chr11|NW_003871075.1 | 18 | 18 | Remapped | NW_003871075.1 |
| NW_003871076.1 | Chr11|NW_003871076.1 | 16 | 16 | Remapped | NW_003871076.1 |
| NW_003871078.1 | Chr11|NW_003871078.1 | 10 | 10 | Remapped | NW_003871078.1 |
| NW_003871079.1 | Chr11|NW_003871079.1 | 13 | 13 | Remapped | NW_003871079.1 |
| NW_003871080.1 | Chr11|NW_003871080.1 | 19 | 19 | Remapped | NW_003871080.1 |
| NW_003871081.1 | Chr11|NW_003871081.1 | 2 | 2 | Remapped | NW_003871081.1 |
| NW_003871082.1 | Chr11|NW_003871082.1 | 1 | 1 | Remapped | NW_003871082.1 |
| NW_004070871.1 | Chr11|NW_004070871.1 | 17 | 17 | Remapped | NW_004070871.1 |
| NW_003571048.1 | Chr12|NW_003571048.1 | 10 | 10 | Remapped | NW_003571048.1 |
| NW_003871083.2 | Chr12|NW_003871083.2 | 26 | 26 | Remapped | NW_003871083.2 |
| NW_004504303.2 | Chr12|NW_004504303.2 | 9 | 9 | Remapped | NW_004504303.2 |
| NW_003571051.1 | Chr13|NW_003571051.1 | 1 | 1 | Remapped | NW_003571051.1 |
| NW_004166863.1 | Chr14|NW_004166863.1 | 70 | 70 | Remapped | NW_004166863.1 |
| NW_003871084.1 | Chr15|NW_003871084.1 | 3 | 3 | Remapped | NW_003871084.1 |
| NW_003871085.1 | Chr16|NW_003871085.1 | 3 | 3 | Remapped | NW_003871085.1 |
| NT_113941.1 | Chr17|NT_113941.1 | 9 | 9 | Remapped | NT_113941.1 |
| NW_003315947.1 | Chr17|NW_003315947.1 | 13 | 13 | Remapped | NW_003315947.1 |
| NW_003315948.2 | Chr17|NW_003315948.2 | 3 | 3 | Remapped | NW_003315948.2 |
| NW_003315949.1 | Chr17|NW_003315949.1 | 5 | 5 | Remapped | NW_003315949.1 |
| NW_003315950.2 | Chr17|NW_003315950.2 | 23 | 23 | Remapped | NW_003315950.2 |
| NW_003571052.1 | Chr17|NW_003571052.1 | 26 | 26 | Remapped | NW_003571052.1 |
| NW_003871087.1 | Chr17|NW_003871087.1 | 9 | 9 | Remapped | NW_003871087.1 |
| NW_003871088.1 | Chr17|NW_003871088.1 | 22 | 22 | Remapped | NW_003871088.1 |
| NW_003871089.1 | Chr17|NW_003871089.1 | 11 | 11 | Remapped | NW_003871089.1 |
| NW_003871090.1 | Chr17|NW_003871090.1 | 5 | 5 | Remapped | NW_003871090.1 |
| NW_004070872.2 | Chr17|NW_004070872.2 | 10 | 10 | Remapped | NW_004070872.2 |
| NW_004166864.2 | Chr17|NW_004166864.2 | 6 | 6 | Remapped | NW_004166864.2 |
| NW_004775433.1 | Chr17|NW_004775433.1 | 23 | 23 | Remapped | NW_004775433.1 |
| NW_003571053.2 | Chr19|NW_003571053.2 | 68 | 68 | Remapped | NW_003571053.2 |
| NW_003871094.1 | Chr19|NW_003871094.1 | 30 | 30 | Remapped | NW_003871094.1 |
| NW_004166865.1 | Chr19|NW_004166865.1 | 122 | 122 | Remapped | NW_004166865.1 |
| NW_004775434.1 | Chr19|NW_004775434.1 | 23 | 23 | Remapped | NW_004775434.1 |
| NW_003871095.1 | Chr20|NW_003871095.1 | 1 | 1 | Remapped | NW_003871095.1 |
| NW_004504304.1 | Chr20|NW_004504304.1 | 10 | 10 | Remapped | NW_004504304.1 |
| NW_003315968.1 | Chr21|NW_003315968.1 | 11 | 11 | Remapped | NW_003315968.1 |
| NW_003315970.1 | Chr21|NW_003315970.1 | 1 | 1 | Remapped | NW_003315970.1 |
| NW_004775435.1 | Chr21|NW_004775435.1 | 8 | 8 | Remapped | NW_004775435.1 |
| NT_113961.1 | Chr22|NT_113961.1 | 2 | 2 | Remapped | NT_113961.1 |
| NW_003871096.1 | Chr22|NW_003871096.1 | 17 | 17 | Remapped | NW_003871096.1 |
| NT_167235.1 | Chr22|NT_167235.1 | 49 | 49 | Remapped | NT_167235.1 |
| NW_003571064.2 | ChrX|NW_003571064.2 | 100 | 100 | Remapped | NW_003571064.2 |
| NW_003871098.1 | ChrX|NW_003871098.1 | 14 | 14 | Remapped | NW_003871098.1 |
| NW_003871099.1 | ChrX|NW_003871099.1 | 11 | 11 | Remapped | NW_003871099.1 |
| NW_003871100.1 | ChrX|NW_003871100.1 | 51 | 51 | Remapped | NW_003871100.1 |
| NW_003871101.3 | ChrX|NW_003871101.3 | 6 | 6 | Remapped | NW_003871101.3 |
| NW_003871102.1 | ChrX|NW_003871102.1 | 1 | 1 | Remapped | NW_003871102.1 |
| NW_003871103.3 | ChrX|NW_003871103.3 | 57 | 57 | Remapped | NW_003871103.3 |
| NW_004070877.1 | ChrX|NW_004070877.1 | 93 | 93 | Remapped | NW_004070877.1 |
| NW_004070878.1 | ChrX|NW_004070878.1 | 16 | 16 | Remapped | NW_004070878.1 |
| NW_004070879.1 | ChrX|NW_004070879.1 | 11 | 11 | Remapped | NW_004070879.1 |
| NW_004070880.2 | ChrX|NW_004070880.2 | 75 | 75 | Remapped | NW_004070880.2 |
| NW_004070881.1 | ChrX|NW_004070881.1 | 12 | 12 | Remapped | NW_004070881.1 |
| NW_004070882.1 | ChrX|NW_004070882.1 | 14 | 14 | Remapped | NW_004070882.1 |
| NW_004070883.1 | ChrX|NW_004070883.1 | 10 | 10 | Remapped | NW_004070883.1 |
| NW_004070884.1 | ChrX|NW_004070884.1 | 10 | 10 | Remapped | NW_004070884.1 |
| NW_004070885.1 | ChrX|NW_004070885.1 | 5 | 5 | Remapped | NW_004070885.1 |
| NW_004070886.1 | ChrX|NW_004070886.1 | 13 | 13 | Remapped | NW_004070886.1 |
| NW_004070887.1 | ChrX|NW_004070887.1 | 14 | 14 | Remapped | NW_004070887.1 |
| NW_004070888.1 | ChrX|NW_004070888.1 | 8 | 8 | Remapped | NW_004070888.1 |
| NW_004070889.1 | ChrX|NW_004070889.1 | 34 | 34 | Remapped | NW_004070889.1 |
| NW_004070890.2 | ChrX|NW_004070890.2 | 167 | 167 | Remapped | NW_004070890.2 |
| NW_004070891.1 | ChrX|NW_004070891.1 | 47 | 47 | Remapped | NW_004070891.1 |
| NW_004070892.1 | ChrX|NW_004070892.1 | 8 | 8 | Remapped | NW_004070892.1 |
| NW_004070893.1 | ChrX|NW_004070893.1 | 2 | 2 | Remapped | NW_004070893.1 |
| NW_004166866.1 | ChrX|NW_004166866.1 | 9 | 9 | Remapped | NW_004166866.1 |
| Variant Region remap status | Variant Call remap status | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
| NC_000001.11 | Chr1 | 10,590 | 10,419 | 0 | 2 | 20 | 149 | 10,590 | 10,419 | 0 | 2 | 20 | 149 |
| NC_000002.12 | Chr2 | 10,969 | 10,907 | 3 | 10 | 17 | 32 | 10,969 | 10,907 | 3 | 10 | 17 | 32 |
| NC_000003.12 | Chr3 | 9,802 | 9,701 | 0 | 10 | 57 | 34 | 9,802 | 9,701 | 0 | 10 | 57 | 34 |
| NC_000004.12 | Chr4 | 9,091 | 9,037 | 0 | 0 | 2 | 52 | 9,091 | 9,037 | 0 | 0 | 2 | 52 |
| NC_000005.10 | Chr5 | 8,407 | 8,370 | 0 | 0 | 6 | 31 | 8,407 | 8,370 | 0 | 0 | 6 | 31 |
| NC_000006.12 | Chr6 | 9,415 | 9,278 | 0 | 16 | 36 | 85 | 9,415 | 9,278 | 0 | 16 | 36 | 85 |
| NC_000007.14 | Chr7 | 8,230 | 7,938 | 5 | 12 | 22 | 253 | 8,230 | 7,938 | 5 | 12 | 22 | 253 |
| NC_000008.11 | Chr8 | 6,561 | 6,502 | 2 | 1 | 2 | 54 | 6,561 | 6,502 | 2 | 1 | 2 | 54 |
| NC_000009.12 | Chr9 | 5,639 | 5,597 | 0 | 0 | 20 | 22 | 5,639 | 5,597 | 0 | 0 | 20 | 22 |
| NC_000010.11 | Chr10 | 6,280 | 6,067 | 0 | 0 | 55 | 158 | 6,280 | 6,067 | 0 | 0 | 55 | 158 |
| NC_000011.10 | Chr11 | 6,566 | 6,399 | 0 | 0 | 0 | 167 | 6,566 | 6,399 | 0 | 0 | 0 | 167 |
| NC_000012.12 | Chr12 | 7,213 | 7,163 | 0 | 0 | 5 | 45 | 7,213 | 7,163 | 0 | 0 | 5 | 45 |
| NC_000013.11 | Chr13 | 4,971 | 4,964 | 0 | 0 | 7 | 0 | 4,971 | 4,964 | 0 | 0 | 7 | 0 |
| NC_000014.9 | Chr14 | 4,466 | 4,443 | 1 | 2 | 4 | 16 | 4,466 | 4,443 | 1 | 2 | 4 | 16 |
| NC_000015.10 | Chr15 | 4,194 | 4,177 | 1 | 0 | 13 | 3 | 4,194 | 4,177 | 1 | 0 | 13 | 3 |
| NC_000016.10 | Chr16 | 3,611 | 3,598 | 0 | 0 | 11 | 2 | 3,611 | 3,598 | 0 | 0 | 11 | 2 |
| NC_000017.11 | Chr17 | 4,884 | 4,762 | 0 | 5 | 26 | 91 | 4,884 | 4,762 | 0 | 5 | 26 | 91 |
| NC_000018.10 | Chr18 | 3,623 | 3,618 | 0 | 0 | 5 | 0 | 3,623 | 3,618 | 0 | 0 | 5 | 0 |
| NC_000019.10 | Chr19 | 4,140 | 4,010 | 1 | 0 | 11 | 118 | 4,140 | 4,010 | 1 | 0 | 11 | 118 |
| NC_000020.11 | Chr20 | 2,896 | 2,695 | 2 | 33 | 155 | 11 | 2,896 | 2,695 | 2 | 33 | 155 | 11 |
| NC_000021.9 | Chr21 | 1,922 | 1,894 | 0 | 2 | 18 | 8 | 1,922 | 1,894 | 0 | 2 | 18 | 8 |
| NC_000022.11 | Chr22 | 2,022 | 1,962 | 5 | 24 | 15 | 16 | 2,022 | 1,962 | 5 | 24 | 15 | 16 |
| NC_000023.11 | ChrX | 4,610 | 3,841 | 1 | 1 | 10 | 757 | 4,610 | 3,841 | 1 | 1 | 10 | 757 |
| NC_000024.10 | ChrY | 113 | 110 | 0 | 0 | 3 | 0 | 113 | 110 | 0 | 0 | 3 | 0 |
Samplesets
Number of Samplesets: 1
- Name:
- SSC Parents Transposable Elements Insertions
- Size:
- 4,577
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- None reported
| Sample ID | Subject ID | Sex | Subject Phenotype |
|---|---|---|---|
| SSC00397.final | SSC00397.final | Female | Not reported |
| SSC00327.final | SSC00327.final | Female | Not reported |
| SSC00139.final | SSC00139.final | Male | Not reported |
| SSC00138.final | SSC00138.final | Female | Not reported |
| SSC00265.final | SSC00265.final | Female | Not reported |
| SSC00100.final | SSC00100.final | Female | Not reported |
| SS0012978.final | SS0012978.final | Female | Not reported |
| SSC00091.final | SSC00091.final | Female | Not reported |
| SSC00351.final | SSC00351.final | Female | Not reported |
| SSC00398.final | SSC00398.final | Male | Not reported |
| SSC00118.final | SSC00118.final | Female | Not reported |
| SSC00078.final | SSC00078.final | Female | Not reported |
| SS0013016.final | SS0013016.final | Male | Not reported |
| SS0013035.final | SS0013035.final | Male | Not reported |
| SSC00182.final | SSC00182.final | Female | Not reported |
| SSC00400.final | SSC00400.final | Male | Not reported |
| SSC00321.final | SSC00321.final | Female | Not reported |
| SSC00369.final | SSC00369.final | Male | Not reported |
| SSC00047.final | SSC00047.final | Male | Not reported |
| SSC00255.final | SSC00255.final | Female | Not reported |
| SSC00229.final | SSC00229.final | Male | Not reported |
| SSC00059.final | SSC00059.final | Male | Not reported |
| SSC00134.final | SSC00134.final | Female | Not reported |
| SSC00101.final | SSC00101.final | Male | Not reported |
| SSC00381.final | SSC00381.final | Female | Not reported |
| SSC00253.final | SSC00253.final | Female | Not reported |
| SSC00235.final | SSC00235.final | Female | Not reported |
| SSC00318.final | SSC00318.final | Female | Not reported |
| SSC00367.final | SSC00367.final | Female | Not reported |
| SSC00236.final | SSC00236.final | Male | Not reported |
| SSC00008.final | SSC00008.final | Female | Not reported |
| SSC00350.final | SSC00350.final | Male | Not reported |
| SSC00046.final | SSC00046.final | Female | Not reported |
| SSC00151.final | SSC00151.final | Male | Not reported |
| SSC00354.final | SSC00354.final | Male | Not reported |
| SSC00347.final | SSC00347.final | Female | Not reported |
| SSC00341.final | SSC00341.final | Male | Not reported |
| SSC00133.final | SSC00133.final | Male | Not reported |
| SSC00362.final | SSC00362.final | Female | Not reported |
| SSC00256.final | SSC00256.final | Male | Not reported |
| SSC00333.final | SSC00333.final | Male | Not reported |
| SSC00104.final | SSC00104.final | Male | Not reported |
| SSC00095.final | SSC00095.final | Male | Not reported |
| SSC00297.final | SSC00297.final | Female | Not reported |
| SS0013015.final | SS0013015.final | Female | Not reported |
| SSC00013.final | SSC00013.final | Male | Not reported |
| SSC00005.final | SSC00005.final | Female | Not reported |
| SSC00150.final | SSC00150.final | Female | Not reported |
| SSC00162.final | SSC00162.final | Female | Not reported |
| SS0012997.final | SS0012997.final | Male | Not reported |
| SSC00034.final | SSC00034.final | Male | Not reported |
| SSC00266.final | SSC00266.final | Male | Not reported |
| SSC00090.final | SSC00090.final | Male | Not reported |
| SSC00353.final | SSC00353.final | Female | Not reported |
| SSC00336.final | SSC00336.final | Female | Not reported |
| SS0013022.final | SS0013022.final | Male | Not reported |
| SSC00257.final | SSC00257.final | Male | Not reported |
| SSC00103.final | SSC00103.final | Female | Not reported |
| SSC00298.final | SSC00298.final | Male | Not reported |
| SSC00030.final | SSC00030.final | Female | Not reported |
| SSC00163.final | SSC00163.final | Male | Not reported |
| SSC00382.final | SSC00382.final | Male | Not reported |
| SSC00334.final | SSC00334.final | Female | Not reported |
| SSC00178.final | SSC00178.final | Male | Not reported |
| SSC00096.final | SSC00096.final | Female | Not reported |
| SSC00112.final | SSC00112.final | Female | Not reported |
| SSC00113.final | SSC00113.final | Male | Not reported |
| SSC00186.final | SSC00186.final | Male | Not reported |
| SSC00326.final | SSC00326.final | Female | Not reported |
| SSC00183.final | SSC00183.final | Male | Not reported |
| SSC00033.final | SSC00033.final | Female | Not reported |
| SSC00174.final | SSC00174.final | Female | Not reported |
| SSC00232.final | SSC00232.final | Male | Not reported |
| SSC00084.final | SSC00084.final | Female | Not reported |
| SSC00083.final | SSC00083.final | Male | Not reported |
| SSC00252.final | SSC00252.final | Male | Not reported |
| SS0013002.final | SS0013002.final | Female | Not reported |
| SSC00117.final | SSC00117.final | Male | Not reported |
| SSC00058.final | SSC00058.final | Female | Not reported |
| SSC00012.final | SSC00012.final | Female | Not reported |
| SSC00175.final | SSC00175.final | Male | Not reported |
| SSC00007.final | SSC00007.final | Male | Not reported |
| SS0013028.final | SS0013028.final | Female | Not reported |
| SS0013004.final | SS0013004.final | Male | Not reported |
| SSC00322.final | SSC00322.final | Male | Not reported |
| SSC00258.final | SSC00258.final | Female | Not reported |
| SSC00276.final | SSC00276.final | Male | Not reported |
| SSC00031.final | SSC00031.final | Male | Not reported |
| SSC00228.final | SSC00228.final | Female | Not reported |
| SSC00361.final | SSC00361.final | Male | Not reported |
| SSC00348.final | SSC00348.final | Male | Not reported |
| SSC00231.final | SSC00231.final | Female | Not reported |
| SSC00299.final | SSC00299.final | Female | Not reported |
| SSC00004.final | SSC00004.final | Male | Not reported |
| SSC00177.final | SSC00177.final | Female | Not reported |
| SSC00238.final | SSC00238.final | Female | Not reported |
| SSC00185.final | SSC00185.final | Female | Not reported |
| SSC00273.final | SSC00273.final | Male | Not reported |
| SSC00079.final | SSC00079.final | Male | Not reported |
| SS0013001.final | SS0013001.final | Female | Not reported |
Experimental Details
| Experiment ID | Type | Method | Analysis | Number of Variant Calls |
|---|---|---|---|---|
| 1 | Discovery | Sequencing | Split read and paired-end mapping | 140,215 |