nstd166 (gnomAD Structural Variants)
- Organism:
- Human
- Study Type:
- Control Set
- Submitter:
- Ryan Collins
- Submitter URL:
- https://gnomad.broadinstitute.org
- Submitter version:
- v2.1
- Description:
- The v2.1 release of gnomAD-SV represents a catalogue of structural variants (SVs) discovered from whole-genome sequencing of 14,891 individuals at 32X mean coverage with 2x150bp Illumina reads. From this dataset, site-level SV data was able to be released for 10,847 unrelated individuals with appropriate consent for broad data sharing. For more information, please refer to Collins*, Brand*, et al., bioRxiv (2019), or the gnomAD-SV explainer. Original VCF files can be found here and, with dbVar accessions included, here. See Variant Summary counts for nstd166 in dbVar Variant Summary.
- Publication(s):
- gnomAD_Structural_Variants
- Last updated:
- 2019-10-04
Detailed Information: Download 304733 Variant Regions, Download 313581 Variant Calls, Download Both, FTP
Variant Summary
Assembly used for analysis:
Remapped: GRCh38.p13 (hg38)
Submitted: GRCh37 (hg19)
Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
---|---|---|---|---|---|
NC_000001.11 | Chr1 | 22,472 | 23,078 | Remapped | NC_000001.11 |
NC_000002.12 | Chr2 | 24,245 | 24,652 | Remapped | NC_000002.12 |
NC_000003.12 | Chr3 | 20,723 | 20,894 | Remapped | NC_000003.12 |
NC_000004.12 | Chr4 | 20,767 | 20,929 | Remapped | NC_000004.12 |
NC_000005.10 | Chr5 | 19,175 | 19,690 | Remapped | NC_000005.10 |
NC_000006.12 | Chr6 | 17,828 | 18,002 | Remapped | NC_000006.12 |
NC_000007.14 | Chr7 | 17,954 | 18,632 | Remapped | NC_000007.14 |
NC_000008.11 | Chr8 | 15,932 | 16,479 | Remapped | NC_000008.11 |
NC_000009.12 | Chr9 | 13,144 | 13,961 | Remapped | NC_000009.12 |
NC_000010.11 | Chr10 | 13,775 | 14,014 | Remapped | NC_000010.11 |
NC_000011.10 | Chr11 | 14,286 | 14,612 | Remapped | NC_000011.10 |
NC_000012.12 | Chr12 | 14,562 | 14,708 | Remapped | NC_000012.12 |
NC_000013.11 | Chr13 | 10,454 | 10,556 | Remapped | NC_000013.11 |
NC_000014.9 | Chr14 | 9,306 | 9,593 | Remapped | NC_000014.9 |
NC_000015.10 | Chr15 | 8,471 | 8,900 | Remapped | NC_000015.10 |
NC_000016.10 | Chr16 | 9,133 | 9,627 | Remapped | NC_000016.10 |
NC_000017.11 | Chr17 | 8,955 | 9,344 | Remapped | NC_000017.11 |
NC_000018.10 | Chr18 | 8,295 | 8,349 | Remapped | NC_000018.10 |
NC_000019.10 | Chr19 | 7,973 | 8,300 | Remapped | NC_000019.10 |
NC_000020.11 | Chr20 | 6,623 | 6,687 | Remapped | NC_000020.11 |
NC_000021.9 | Chr21 | 4,021 | 4,161 | Remapped | NC_000021.9 |
NC_000022.11 | Chr22 | 4,207 | 4,624 | Remapped | NC_000022.11 |
NC_000023.11 | ChrX | 11,242 | 11,782 | Remapped | NC_000023.11 |
NC_000024.10 | ChrY | 929 | 1,553 | Remapped | NC_000024.10 |
NT_187367.1 | Chr1|NT_187367.1 | 1 | 1 | Remapped | NT_187367.1 |
NT_187514.1 | Chr1|NT_187514.1 | 8 | 8 | Remapped | NT_187514.1 |
NT_187515.1 | Chr1|NT_187515.1 | 17 | 17 | Remapped | NT_187515.1 |
NT_187516.1 | Chr1|NT_187516.1 | 44 | 44 | Remapped | NT_187516.1 |
NT_187517.1 | Chr1|NT_187517.1 | 16 | 29 | Remapped | NT_187517.1 |
NT_187518.1 | Chr1|NT_187518.1 | 29 | 50 | Remapped | NT_187518.1 |
NT_187519.1 | Chr1|NT_187519.1 | 86 | 86 | Remapped | NT_187519.1 |
NT_187520.1 | Chr1|NT_187520.1 | 6 | 13 | Remapped | NT_187520.1 |
NT_187521.1 | Chr1|NT_187521.1 | 1 | 1 | Remapped | NT_187521.1 |
NT_187646.1 | Chr1|NT_187646.1 | 29 | 50 | Remapped | NT_187646.1 |
NW_003315905.1 | Chr1|NW_003315905.1 | 13 | 13 | Remapped | NW_003315905.1 |
NW_003315906.1 | Chr1|NW_003315906.1 | 4 | 4 | Remapped | NW_003315906.1 |
NW_003315907.2 | Chr1|NW_003315907.2 | 37 | 37 | Remapped | NW_003315907.2 |
NW_009646194.1 | Chr1|NW_009646194.1 | 15 | 15 | Remapped | NW_009646194.1 |
NW_009646196.1 | Chr1|NW_009646196.1 | 23 | 23 | Remapped | NW_009646196.1 |
NW_011332687.1 | Chr1|NW_011332687.1 | 36 | 36 | Remapped | NW_011332687.1 |
NW_011332688.1 | Chr1|NW_011332688.1 | 50 | 50 | Remapped | NW_011332688.1 |
NW_012132914.1 | Chr1|NW_012132914.1 | 19 | 30 | Remapped | NW_012132914.1 |
NW_014040925.1 | Chr1|NW_014040925.1 | 12 | 12 | Remapped | NW_014040925.1 |
NW_014040926.1 | Chr1|NW_014040926.1 | 40 | 40 | Remapped | NW_014040926.1 |
NW_014040927.1 | Chr1|NW_014040927.1 | 24 | 24 | Remapped | NW_014040927.1 |
NW_015495298.1 | Chr1|NW_015495298.1 | 10 | 10 | Remapped | NW_015495298.1 |
NW_017852928.1 | Chr1|NW_017852928.1 | 56 | 61 | Remapped | NW_017852928.1 |
NW_018654706.1 | Chr1|NW_018654706.1 | 28 | 28 | Remapped | NW_018654706.1 |
NW_018654707.1 | Chr1|NW_018654707.1 | 8 | 10 | Remapped | NW_018654707.1 |
NW_018654708.1 | Chr1|NW_018654708.1 | 34 | 34 | Remapped | NW_018654708.1 |
NW_019805487.1 | Chr1|NW_019805487.1 | 4 | 4 | Remapped | NW_019805487.1 |
NT_187522.1 | Chr2|NT_187522.1 | 13 | 13 | Remapped | NT_187522.1 |
NT_187523.1 | Chr2|NT_187523.1 | 60 | 60 | Remapped | NT_187523.1 |
NT_187525.1 | Chr2|NT_187525.1 | 19 | 19 | Remapped | NT_187525.1 |
NT_187526.1 | Chr2|NT_187526.1 | 13 | 13 | Remapped | NT_187526.1 |
NT_187527.1 | Chr2|NT_187527.1 | 38 | 55 | Remapped | NT_187527.1 |
NT_187528.1 | Chr2|NT_187528.1 | 14 | 14 | Remapped | NT_187528.1 |
NT_187529.1 | Chr2|NT_187529.1 | 45 | 57 | Remapped | NT_187529.1 |
NT_187530.1 | Chr2|NT_187530.1 | 8 | 8 | Remapped | NT_187530.1 |
NT_187531.1 | Chr2|NT_187531.1 | 13 | 13 | Remapped | NT_187531.1 |
NT_187647.1 | Chr2|NT_187647.1 | 60 | 60 | Remapped | NT_187647.1 |
NT_187648.1 | Chr2|NT_187648.1 | 1 | 1 | Remapped | NT_187648.1 |
NW_003315908.1 | Chr2|NW_003315908.1 | 18 | 18 | Remapped | NW_003315908.1 |
NW_003315909.1 | Chr2|NW_003315909.1 | 7 | 7 | Remapped | NW_003315909.1 |
NW_003571033.2 | Chr2|NW_003571033.2 | 3 | 3 | Remapped | NW_003571033.2 |
NW_011332689.1 | Chr2|NW_011332689.1 | 22 | 22 | Remapped | NW_011332689.1 |
NW_011332690.1 | Chr2|NW_011332690.1 | 39 | 39 | Remapped | NW_011332690.1 |
NW_012132915.1 | Chr2|NW_012132915.1 | 2 | 2 | Remapped | NW_012132915.1 |
NW_015495299.1 | Chr2|NW_015495299.1 | 56 | 56 | Remapped | NW_015495299.1 |
NW_018654709.1 | Chr2|NW_018654709.1 | 13 | 13 | Remapped | NW_018654709.1 |
NW_018654710.1 | Chr2|NW_018654710.1 | 14 | 14 | Remapped | NW_018654710.1 |
NT_187678.1 | Chr3|NT_187678.1 | 39 | 70 | Remapped | NT_187678.1 |
NT_187688.1 | Chr3|NT_187688.1 | 39 | 70 | Remapped | NT_187688.1 |
NT_187689.1 | Chr3|NT_187689.1 | 40 | 71 | Remapped | NT_187689.1 |
NT_187690.1 | Chr3|NT_187690.1 | 39 | 70 | Remapped | NT_187690.1 |
NT_187691.1 | Chr3|NT_187691.1 | 39 | 70 | Remapped | NT_187691.1 |
NT_187532.1 | Chr3|NT_187532.1 | 39 | 60 | Remapped | NT_187532.1 |
NT_187533.1 | Chr3|NT_187533.1 | 13 | 13 | Remapped | NT_187533.1 |
NT_187534.1 | Chr3|NT_187534.1 | 18 | 18 | Remapped | NT_187534.1 |
NT_187535.1 | Chr3|NT_187535.1 | 17 | 17 | Remapped | NT_187535.1 |
NT_187536.1 | Chr3|NT_187536.1 | 33 | 33 | Remapped | NT_187536.1 |
NT_187537.1 | Chr3|NT_187537.1 | 33 | 42 | Remapped | NT_187537.1 |
NT_187538.1 | Chr3|NT_187538.1 | 19 | 19 | Remapped | NT_187538.1 |
NT_187539.1 | Chr3|NT_187539.1 | 29 | 35 | Remapped | NT_187539.1 |
NT_187649.1 | Chr3|NT_187649.1 | 39 | 70 | Remapped | NT_187649.1 |
NW_003315913.1 | Chr3|NW_003315913.1 | 21 | 21 | Remapped | NW_003315913.1 |
NW_003871060.2 | Chr3|NW_003871060.2 | 15 | 15 | Remapped | NW_003871060.2 |
NW_009646197.1 | Chr3|NW_009646197.1 | 31 | 31 | Remapped | NW_009646197.1 |
NW_011332691.1 | Chr3|NW_011332691.1 | 50 | 50 | Remapped | NW_011332691.1 |
NW_012132916.1 | Chr3|NW_012132916.1 | 44 | 44 | Remapped | NW_012132916.1 |
NW_017363813.1 | Chr3|NW_017363813.1 | 34 | 34 | Remapped | NW_017363813.1 |
NW_018654711.1 | Chr3|NW_018654711.1 | 12 | 12 | Remapped | NW_018654711.1 |
NW_019805488.1 | Chr3|NW_019805488.1 | 21 | 21 | Remapped | NW_019805488.1 |
NW_019805489.1 | Chr3|NW_019805489.1 | 21 | 21 | Remapped | NW_019805489.1 |
NW_019805490.1 | Chr3|NW_019805490.1 | 21 | 21 | Remapped | NW_019805490.1 |
NW_019805491.1 | Chr3|NW_019805491.1 | 12 | 12 | Remapped | NW_019805491.1 |
NW_019805492.1 | Chr3|NW_019805492.1 | 15 | 15 | Remapped | NW_019805492.1 |
NT_187679.1 | Chr4|NT_187679.1 | 86 | 87 | Remapped | NT_187679.1 |
NT_187540.1 | Chr4|NT_187540.1 | 35 | 35 | Remapped | NT_187540.1 |
NT_187541.1 | Chr4|NT_187541.1 | 7 | 7 | Remapped | NT_187541.1 |
NT_187542.1 | Chr4|NT_187542.1 | 15 | 15 | Remapped | NT_187542.1 |
NT_187543.1 | Chr4|NT_187543.1 | 30 | 31 | Remapped | NT_187543.1 |
NT_187544.1 | Chr4|NT_187544.1 | 13 | 13 | Remapped | NT_187544.1 |
NT_187545.1 | Chr4|NT_187545.1 | 38 | 38 | Remapped | NT_187545.1 |
NT_187650.1 | Chr4|NT_187650.1 | 35 | 36 | Remapped | NT_187650.1 |
NW_003315914.1 | Chr4|NW_003315914.1 | 13 | 13 | Remapped | NW_003315914.1 |
NW_003315915.1 | Chr4|NW_003315915.1 | 49 | 49 | Remapped | NW_003315915.1 |
NW_013171799.1 | Chr4|NW_013171799.1 | 11 | 11 | Remapped | NW_013171799.1 |
NW_013171800.1 | Chr4|NW_013171800.1 | 25 | 26 | Remapped | NW_013171800.1 |
NW_013171801.1 | Chr4|NW_013171801.1 | 33 | 33 | Remapped | NW_013171801.1 |
NW_017363814.1 | Chr4|NW_017363814.1 | 35 | 35 | Remapped | NW_017363814.1 |
NT_187546.1 | Chr5|NT_187546.1 | 20 | 55 | Remapped | NT_187546.1 |
NT_187547.1 | Chr5|NT_187547.1 | 21 | 29 | Remapped | NT_187547.1 |
NT_187548.1 | Chr5|NT_187548.1 | 63 | 82 | Remapped | NT_187548.1 |
NT_187549.1 | Chr5|NT_187549.1 | 16 | 16 | Remapped | NT_187549.1 |
NT_187550.1 | Chr5|NT_187550.1 | 27 | 33 | Remapped | NT_187550.1 |
NT_187551.1 | Chr5|NT_187551.1 | 14 | 14 | Remapped | NT_187551.1 |
NT_187651.1 | Chr5|NT_187651.1 | 94 | 175 | Remapped | NT_187651.1 |
NT_187652.1 | Chr5|NT_187652.1 | 20 | 72 | Remapped | NT_187652.1 |
NW_003315917.2 | Chr5|NW_003315917.2 | 136 | 228 | Remapped | NW_003315917.2 |
NW_003315918.1 | Chr5|NW_003315918.1 | 7 | 7 | Remapped | NW_003315918.1 |
NW_003315919.1 | Chr5|NW_003315919.1 | 11 | 11 | Remapped | NW_003315919.1 |
NW_003315920.1 | Chr5|NW_003315920.1 | 11 | 11 | Remapped | NW_003315920.1 |
NW_003571036.1 | Chr5|NW_003571036.1 | 25 | 25 | Remapped | NW_003571036.1 |
NW_009646199.1 | Chr5|NW_009646199.1 | 23 | 23 | Remapped | NW_009646199.1 |
NW_016107297.1 | Chr5|NW_016107297.1 | 33 | 65 | Remapped | NW_016107297.1 |
NW_016107298.1 | Chr5|NW_016107298.1 | 100 | 100 | Remapped | NW_016107298.1 |
NW_018654712.1 | Chr5|NW_018654712.1 | 14 | 14 | Remapped | NW_018654712.1 |
NT_187552.1 | Chr6|NT_187552.1 | 22 | 22 | Remapped | NT_187552.1 |
NT_187553.1 | Chr6|NT_187553.1 | 37 | 37 | Remapped | NT_187553.1 |
NT_187554.1 | Chr6|NT_187554.1 | 15 | 15 | Remapped | NT_187554.1 |
NT_187555.1 | Chr6|NT_187555.1 | 19 | 19 | Remapped | NT_187555.1 |
NT_187556.1 | Chr6|NT_187556.1 | 96 | 96 | Remapped | NT_187556.1 |
NT_187557.1 | Chr6|NT_187557.1 | 3 | 3 | Remapped | NT_187557.1 |
NW_003315921.1 | Chr6|NW_003315921.1 | 7 | 7 | Remapped | NW_003315921.1 |
NW_004166862.2 | Chr6|NW_004166862.2 | 28 | 28 | Remapped | NW_004166862.2 |
NW_009646200.1 | Chr6|NW_009646200.1 | 43 | 43 | Remapped | NW_009646200.1 |
NW_012132918.1 | Chr6|NW_012132918.1 | 41 | 41 | Remapped | NW_012132918.1 |
NW_013171802.1 | Chr6|NW_013171802.1 | 22 | 22 | Remapped | NW_013171802.1 |
NW_013171803.1 | Chr6|NW_013171803.1 | 6 | 6 | Remapped | NW_013171803.1 |
NW_017363815.1 | Chr6|NW_017363815.1 | 16 | 16 | Remapped | NW_017363815.1 |
NW_018654713.1 | Chr6|NW_018654713.1 | 30 | 30 | Remapped | NW_018654713.1 |
NT_187558.1 | Chr7|NT_187558.1 | 40 | 40 | Remapped | NT_187558.1 |
NT_187559.1 | Chr7|NT_187559.1 | 23 | 23 | Remapped | NT_187559.1 |
NT_187560.1 | Chr7|NT_187560.1 | 56 | 63 | Remapped | NT_187560.1 |
NT_187561.1 | Chr7|NT_187561.1 | 41 | 46 | Remapped | NT_187561.1 |
NT_187563.1 | Chr7|NT_187563.1 | 20 | 25 | Remapped | NT_187563.1 |
NT_187564.1 | Chr7|NT_187564.1 | 28 | 33 | Remapped | NT_187564.1 |
NW_003315922.2 | Chr7|NW_003315922.2 | 10 | 10 | Remapped | NW_003315922.2 |
NW_012132919.1 | Chr7|NW_012132919.1 | 24 | 24 | Remapped | NW_012132919.1 |
NW_017852929.1 | Chr7|NW_017852929.1 | 18 | 18 | Remapped | NW_017852929.1 |
NW_017852930.1 | Chr7|NW_017852930.1 | 41 | 41 | Remapped | NW_017852930.1 |
NW_018654714.1 | Chr7|NW_018654714.1 | 45 | 56 | Remapped | NW_018654714.1 |
NW_018654715.1 | Chr7|NW_018654715.1 | 42 | 42 | Remapped | NW_018654715.1 |
NW_019805493.1 | Chr7|NW_019805493.1 | 28 | 28 | Remapped | NW_019805493.1 |
NT_187680.1 | Chr8|NT_187680.1 | 44 | 55 | Remapped | NT_187680.1 |
NT_187565.1 | Chr8|NT_187565.1 | 68 | 78 | Remapped | NT_187565.1 |
NT_187566.1 | Chr8|NT_187566.1 | 23 | 80 | Remapped | NT_187566.1 |
NT_187567.1 | Chr8|NT_187567.1 | 43 | 43 | Remapped | NT_187567.1 |
NT_187568.1 | Chr8|NT_187568.1 | 53 | 58 | Remapped | NT_187568.1 |
NT_187569.1 | Chr8|NT_187569.1 | 20 | 20 | Remapped | NT_187569.1 |
NT_187570.1 | Chr8|NT_187570.1 | 19 | 60 | Remapped | NT_187570.1 |
NT_187571.1 | Chr8|NT_187571.1 | 51 | 51 | Remapped | NT_187571.1 |
NT_187572.1 | Chr8|NT_187572.1 | 25 | 25 | Remapped | NT_187572.1 |
NT_187573.1 | Chr8|NT_187573.1 | 19 | 31 | Remapped | NT_187573.1 |
NT_187574.1 | Chr8|NT_187574.1 | 9 | 9 | Remapped | NT_187574.1 |
NT_187575.1 | Chr8|NT_187575.1 | 3 | 3 | Remapped | NT_187575.1 |
NT_187577.1 | Chr8|NT_187577.1 | 67 | 67 | Remapped | NT_187577.1 |
NT_187654.1 | Chr8|NT_187654.1 | 56 | 67 | Remapped | NT_187654.1 |
NT_187655.1 | Chr8|NT_187655.1 | 29 | 29 | Remapped | NT_187655.1 |
NW_017852931.1 | Chr8|NW_017852931.1 | 16 | 16 | Remapped | NW_017852931.1 |
NW_017852932.1 | Chr8|NW_017852932.1 | 20 | 20 | Remapped | NW_017852932.1 |
NW_018654716.1 | Chr8|NW_018654716.1 | 26 | 26 | Remapped | NW_018654716.1 |
NW_018654717.1 | Chr8|NW_018654717.1 | 669 | 834 | Remapped | NW_018654717.1 |
NW_019805494.1 | Chr8|NW_019805494.1 | 10 | 10 | Remapped | NW_019805494.1 |
NT_187578.1 | Chr9|NT_187578.1 | 38 | 38 | Remapped | NT_187578.1 |
NW_003315928.1 | Chr9|NW_003315928.1 | 10 | 10 | Remapped | NW_003315928.1 |
NW_003315929.1 | Chr9|NW_003315929.1 | 5 | 5 | Remapped | NW_003315929.1 |
NW_003315930.1 | Chr9|NW_003315930.1 | 7 | 7 | Remapped | NW_003315930.1 |
NW_003315931.1 | Chr9|NW_003315931.1 | 5 | 5 | Remapped | NW_003315931.1 |
NW_009646201.1 | Chr9|NW_009646201.1 | 43 | 43 | Remapped | NW_009646201.1 |
NW_013171804.1 | Chr9|NW_013171804.1 | 30 | 30 | Remapped | NW_013171804.1 |
NW_013171805.1 | Chr9|NW_013171805.1 | 25 | 25 | Remapped | NW_013171805.1 |
NT_187579.1 | Chr10|NT_187579.1 | 19 | 19 | Remapped | NT_187579.1 |
NT_187580.1 | Chr10|NT_187580.1 | 6 | 6 | Remapped | NT_187580.1 |
NW_003315934.1 | Chr10|NW_003315934.1 | 23 | 23 | Remapped | NW_003315934.1 |
NW_003315935.1 | Chr10|NW_003315935.1 | 35 | 35 | Remapped | NW_003315935.1 |
NW_009646202.1 | Chr10|NW_009646202.1 | 34 | 34 | Remapped | NW_009646202.1 |
NW_011332692.1 | Chr10|NW_011332692.1 | 2 | 2 | Remapped | NW_011332692.1 |
NW_013171806.1 | Chr10|NW_013171806.1 | 25 | 27 | Remapped | NW_013171806.1 |
NW_013171807.1 | Chr10|NW_013171807.1 | 17 | 17 | Remapped | NW_013171807.1 |
NT_187681.1 | Chr11|NT_187681.1 | 31 | 31 | Remapped | NT_187681.1 |
NT_187656.1 | Chr11|NT_187656.1 | 13 | 13 | Remapped | NT_187656.1 |
NT_187657.1 | Chr11|NT_187657.1 | 24 | 24 | Remapped | NT_187657.1 |
NT_187581.1 | Chr11|NT_187581.1 | 39 | 39 | Remapped | NT_187581.1 |
NT_187582.1 | Chr11|NT_187582.1 | 6 | 6 | Remapped | NT_187582.1 |
NT_187583.1 | Chr11|NT_187583.1 | 25 | 25 | Remapped | NT_187583.1 |
NT_187584.1 | Chr11|NT_187584.1 | 19 | 19 | Remapped | NT_187584.1 |
NT_187585.1 | Chr11|NT_187585.1 | 28 | 28 | Remapped | NT_187585.1 |
NT_187586.1 | Chr11|NT_187586.1 | 34 | 34 | Remapped | NT_187586.1 |
NW_003315936.1 | Chr11|NW_003315936.1 | 22 | 22 | Remapped | NW_003315936.1 |
NW_003871073.1 | Chr11|NW_003871073.1 | 17 | 17 | Remapped | NW_003871073.1 |
NW_003871074.1 | Chr11|NW_003871074.1 | 38 | 38 | Remapped | NW_003871074.1 |
NW_009646203.1 | Chr11|NW_009646203.1 | 29 | 29 | Remapped | NW_009646203.1 |
NW_011332695.1 | Chr11|NW_011332695.1 | 25 | 25 | Remapped | NW_011332695.1 |
NW_013171808.1 | Chr11|NW_013171808.1 | 21 | 21 | Remapped | NW_013171808.1 |
NW_015148966.1 | Chr11|NW_015148966.1 | 24 | 24 | Remapped | NW_015148966.1 |
NW_017363816.1 | Chr11|NW_017363816.1 | 19 | 19 | Remapped | NW_017363816.1 |
NW_019805495.1 | Chr11|NW_019805495.1 | 52 | 52 | Remapped | NW_019805495.1 |
NW_019805496.1 | Chr11|NW_019805496.1 | 23 | 23 | Remapped | NW_019805496.1 |
NW_019805497.1 | Chr11|NW_019805497.1 | 55 | 55 | Remapped | NW_019805497.1 |
NW_019805498.1 | Chr11|NW_019805498.1 | 16 | 16 | Remapped | NW_019805498.1 |
NT_187658.1 | Chr12|NT_187658.1 | 56 | 58 | Remapped | NT_187658.1 |
NT_187587.1 | Chr12|NT_187587.1 | 41 | 47 | Remapped | NT_187587.1 |
NT_187588.1 | Chr12|NT_187588.1 | 5 | 5 | Remapped | NT_187588.1 |
NT_187589.1 | Chr12|NT_187589.1 | 9 | 9 | Remapped | NT_187589.1 |
NT_187590.1 | Chr12|NT_187590.1 | 11 | 11 | Remapped | NT_187590.1 |
NT_187591.1 | Chr12|NT_187591.1 | 12 | 12 | Remapped | NT_187591.1 |
NW_003315938.1 | Chr12|NW_003315938.1 | 11 | 11 | Remapped | NW_003315938.1 |
NW_003315939.2 | Chr12|NW_003315939.2 | 19 | 19 | Remapped | NW_003315939.2 |
NW_003315940.1 | Chr12|NW_003315940.1 | 24 | 25 | Remapped | NW_003315940.1 |
NW_003315941.1 | Chr12|NW_003315941.1 | 15 | 15 | Remapped | NW_003315941.1 |
NW_003315942.2 | Chr12|NW_003315942.2 | 12 | 12 | Remapped | NW_003315942.2 |
NW_003571050.1 | Chr12|NW_003571050.1 | 35 | 37 | Remapped | NW_003571050.1 |
NW_009646204.1 | Chr12|NW_009646204.1 | 26 | 26 | Remapped | NW_009646204.1 |
NW_011332696.1 | Chr12|NW_011332696.1 | 81 | 81 | Remapped | NW_011332696.1 |
NW_011332697.1 | Chr12|NW_011332697.1 | 4 | 4 | Remapped | NW_011332697.1 |
NW_013171809.1 | Chr12|NW_013171809.1 | 14 | 17 | Remapped | NW_013171809.1 |
NW_015148967.1 | Chr12|NW_015148967.1 | 39 | 39 | Remapped | NW_015148967.1 |
NW_018654718.1 | Chr12|NW_018654718.1 | 110 | 110 | Remapped | NW_018654718.1 |
NW_018654719.1 | Chr12|NW_018654719.1 | 11 | 11 | Remapped | NW_018654719.1 |
NW_018654720.1 | Chr12|NW_018654720.1 | 14 | 14 | Remapped | NW_018654720.1 |
NW_019805499.1 | Chr12|NW_019805499.1 | 20 | 20 | Remapped | NW_019805499.1 |
NT_187592.1 | Chr13|NT_187592.1 | 32 | 68 | Remapped | NT_187592.1 |
NT_187595.1 | Chr13|NT_187595.1 | 20 | 20 | Remapped | NT_187595.1 |
NT_187596.1 | Chr13|NT_187596.1 | 5 | 5 | Remapped | NT_187596.1 |
NT_187597.1 | Chr13|NT_187597.1 | 11 | 11 | Remapped | NT_187597.1 |
NW_009646205.1 | Chr13|NW_009646205.1 | 5 | 5 | Remapped | NW_009646205.1 |
NW_011332700.1 | Chr13|NW_011332700.1 | 14 | 14 | Remapped | NW_011332700.1 |
NW_013171810.1 | Chr13|NW_013171810.1 | 20 | 20 | Remapped | NW_013171810.1 |
NW_013171811.1 | Chr13|NW_013171811.1 | 12 | 12 | Remapped | NW_013171811.1 |
NT_187598.1 | Chr14|NT_187598.1 | 28 | 28 | Remapped | NT_187598.1 |
NT_187599.1 | Chr14|NT_187599.1 | 23 | 23 | Remapped | NT_187599.1 |
NT_187601.1 | Chr14|NT_187601.1 | 138 | 138 | Remapped | NT_187601.1 |
NW_018654721.1 | Chr14|NW_018654721.1 | 15 | 15 | Remapped | NW_018654721.1 |
NW_018654722.1 | Chr14|NW_018654722.1 | 98 | 98 | Remapped | NW_018654722.1 |
NT_187659.1 | Chr15|NT_187659.1 | 9 | 25 | Remapped | NT_187659.1 |
NT_187660.1 | Chr15|NT_187660.1 | 377 | 400 | Remapped | NT_187660.1 |
NT_187602.1 | Chr15|NT_187602.1 | 2 | 2 | Remapped | NT_187602.1 |
NT_187604.1 | Chr15|NT_187604.1 | 18 | 23 | Remapped | NT_187604.1 |
NT_187605.1 | Chr15|NT_187605.1 | 27 | 27 | Remapped | NT_187605.1 |
NT_187606.1 | Chr15|NT_187606.1 | 22 | 39 | Remapped | NT_187606.1 |
NW_003315943.1 | Chr15|NW_003315943.1 | 10 | 28 | Remapped | NW_003315943.1 |
NW_003315944.2 | Chr15|NW_003315944.2 | 23 | 23 | Remapped | NW_003315944.2 |
NT_187607.1 | Chr16|NT_187607.1 | 318 | 379 | Remapped | NT_187607.1 |
NT_187608.1 | Chr16|NT_187608.1 | 43 | 43 | Remapped | NT_187608.1 |
NT_187609.1 | Chr16|NT_187609.1 | 8 | 8 | Remapped | NT_187609.1 |
NT_187610.1 | Chr16|NT_187610.1 | 41 | 41 | Remapped | NT_187610.1 |
NW_003315945.1 | Chr16|NW_003315945.1 | 14 | 14 | Remapped | NW_003315945.1 |
NW_003315946.1 | Chr16|NW_003315946.1 | 13 | 13 | Remapped | NW_003315946.1 |
NW_012132921.1 | Chr16|NW_012132921.1 | 27 | 27 | Remapped | NW_012132921.1 |
NW_013171812.1 | Chr16|NW_013171812.1 | 2 | 2 | Remapped | NW_013171812.1 |
NW_013171813.1 | Chr16|NW_013171813.1 | 23 | 23 | Remapped | NW_013171813.1 |
NW_017852933.1 | Chr16|NW_017852933.1 | 119 | 137 | Remapped | NW_017852933.1 |
NW_018654723.1 | Chr16|NW_018654723.1 | 13 | 13 | Remapped | NW_018654723.1 |
NW_019805500.1 | Chr16|NW_019805500.1 | 50 | 50 | Remapped | NW_019805500.1 |
NT_187662.1 | Chr17|NT_187662.1 | 41 | 41 | Remapped | NT_187662.1 |
NT_187663.1 | Chr17|NT_187663.1 | 120 | 203 | Remapped | NT_187663.1 |
NT_187664.1 | Chr17|NT_187664.1 | 21 | 21 | Remapped | NT_187664.1 |
NW_003871093.1 | Chr17|NW_003871093.1 | 19 | 21 | Remapped | NW_003871093.1 |
NT_167251.2 | Chr17|NT_167251.2 | 11 | 11 | Remapped | NT_167251.2 |
NT_187611.1 | Chr17|NT_187611.1 | 49 | 58 | Remapped | NT_187611.1 |
NT_187612.1 | Chr17|NT_187612.1 | 34 | 43 | Remapped | NT_187612.1 |
NT_187613.1 | Chr17|NT_187613.1 | 104 | 104 | Remapped | NT_187613.1 |
NT_187615.1 | Chr17|NT_187615.1 | 22 | 22 | Remapped | NT_187615.1 |
NT_187616.1 | Chr17|NT_187616.1 | 13 | 13 | Remapped | NT_187616.1 |
NW_003315952.3 | Chr17|NW_003315952.3 | 62 | 62 | Remapped | NW_003315952.3 |
NW_003315953.2 | Chr17|NW_003315953.2 | 7 | 7 | Remapped | NW_003315953.2 |
NW_003315954.1 | Chr17|NW_003315954.1 | 18 | 18 | Remapped | NW_003315954.1 |
NW_003315955.1 | Chr17|NW_003315955.1 | 13 | 13 | Remapped | NW_003315955.1 |
NW_003871091.1 | Chr17|NW_003871091.1 | 47 | 47 | Remapped | NW_003871091.1 |
NW_003871092.1 | Chr17|NW_003871092.1 | 12 | 12 | Remapped | NW_003871092.1 |
NW_016107299.1 | Chr17|NW_016107299.1 | 13 | 13 | Remapped | NW_016107299.1 |
NW_017363817.1 | Chr17|NW_017363817.1 | 51 | 51 | Remapped | NW_017363817.1 |
NW_017363818.1 | Chr17|NW_017363818.1 | 33 | 33 | Remapped | NW_017363818.1 |
NW_017363819.1 | Chr17|NW_017363819.1 | 45 | 55 | Remapped | NW_017363819.1 |
NW_019805501.1 | Chr17|NW_019805501.1 | 13 | 13 | Remapped | NW_019805501.1 |
NT_187665.1 | Chr18|NT_187665.1 | 24 | 24 | Remapped | NT_187665.1 |
NT_187666.1 | Chr18|NT_187666.1 | 16 | 16 | Remapped | NT_187666.1 |
NT_187617.1 | Chr18|NT_187617.1 | 30 | 30 | Remapped | NT_187617.1 |
NT_187618.1 | Chr18|NT_187618.1 | 14 | 14 | Remapped | NT_187618.1 |
NW_003315956.1 | Chr18|NW_003315956.1 | 30 | 30 | Remapped | NW_003315956.1 |
NW_003315957.1 | Chr18|NW_003315957.1 | 9 | 9 | Remapped | NW_003315957.1 |
NW_003315958.1 | Chr18|NW_003315958.1 | 21 | 21 | Remapped | NW_003315958.1 |
NW_003315959.1 | Chr18|NW_003315959.1 | 21 | 21 | Remapped | NW_003315959.1 |
NW_003315960.1 | Chr18|NW_003315960.1 | 18 | 18 | Remapped | NW_003315960.1 |
NW_003315961.1 | Chr18|NW_003315961.1 | 16 | 16 | Remapped | NW_003315961.1 |
NW_013171814.1 | Chr18|NW_013171814.1 | 38 | 38 | Remapped | NW_013171814.1 |
NW_014040928.1 | Chr18|NW_014040928.1 | 26 | 26 | Remapped | NW_014040928.1 |
NW_018654724.1 | Chr18|NW_018654724.1 | 16 | 16 | Remapped | NW_018654724.1 |
NW_019805502.1 | Chr18|NW_019805502.1 | 7 | 7 | Remapped | NW_019805502.1 |
NW_019805503.1 | Chr18|NW_019805503.1 | 23 | 23 | Remapped | NW_019805503.1 |
NT_187675.1 | Chr19|NT_187675.1 | 1 | 1 | Remapped | NT_187675.1 |
NW_003571061.2 | Chr19|NW_003571061.2 | 128 | 131 | Remapped | NW_003571061.2 |
NW_003571057.2 | Chr19|NW_003571057.2 | 89 | 92 | Remapped | NW_003571057.2 |
NW_003571058.2 | Chr19|NW_003571058.2 | 89 | 92 | Remapped | NW_003571058.2 |
NW_003571059.2 | Chr19|NW_003571059.2 | 90 | 93 | Remapped | NW_003571059.2 |
NW_003571060.1 | Chr19|NW_003571060.1 | 160 | 167 | Remapped | NW_003571060.1 |
NW_003571056.2 | Chr19|NW_003571056.2 | 89 | 92 | Remapped | NW_003571056.2 |
NW_003571055.2 | Chr19|NW_003571055.2 | 113 | 116 | Remapped | NW_003571055.2 |
NT_187619.1 | Chr19|NT_187619.1 | 5 | 5 | Remapped | NT_187619.1 |
NT_187620.1 | Chr19|NT_187620.1 | 33 | 33 | Remapped | NT_187620.1 |
NT_187621.1 | Chr19|NT_187621.1 | 6 | 6 | Remapped | NT_187621.1 |
NT_187622.1 | Chr19|NT_187622.1 | 18 | 18 | Remapped | NT_187622.1 |
NW_003315962.1 | Chr19|NW_003315962.1 | 82 | 82 | Remapped | NW_003315962.1 |
NW_003315963.1 | Chr19|NW_003315963.1 | 17 | 17 | Remapped | NW_003315963.1 |
NW_003315964.2 | Chr19|NW_003315964.2 | 28 | 28 | Remapped | NW_003315964.2 |
NW_003315965.1 | Chr19|NW_003315965.1 | 39 | 39 | Remapped | NW_003315965.1 |
NW_003571054.1 | Chr19|NW_003571054.1 | 160 | 170 | Remapped | NW_003571054.1 |
NW_014040929.1 | Chr19|NW_014040929.1 | 50 | 50 | Remapped | NW_014040929.1 |
NW_016107303.1 | Chr19|NW_016107303.1 | 1 | 1 | Remapped | NW_016107303.1 |
NT_187623.1 | Chr20|NT_187623.1 | 13 | 13 | Remapped | NT_187623.1 |
NT_187624.1 | Chr20|NT_187624.1 | 27 | 27 | Remapped | NT_187624.1 |
NT_187625.1 | Chr20|NT_187625.1 | 3 | 3 | Remapped | NT_187625.1 |
NW_003315966.2 | Chr20|NW_003315966.2 | 14 | 14 | Remapped | NW_003315966.2 |
NT_187626.1 | Chr21|NT_187626.1 | 9 | 9 | Remapped | NT_187626.1 |
NT_187627.1 | Chr21|NT_187627.1 | 15 | 15 | Remapped | NT_187627.1 |
NT_187628.1 | Chr21|NT_187628.1 | 15 | 15 | Remapped | NT_187628.1 |
NW_003315967.2 | Chr21|NW_003315967.2 | 2 | 2 | Remapped | NW_003315967.2 |
NW_003315968.2 | Chr21|NW_003315968.2 | 32 | 32 | Remapped | NW_003315968.2 |
NW_003315969.2 | Chr21|NW_003315969.2 | 5 | 5 | Remapped | NW_003315969.2 |
NW_003315970.2 | Chr21|NW_003315970.2 | 11 | 11 | Remapped | NW_003315970.2 |
NT_187682.1 | Chr22|NT_187682.1 | 12 | 20 | Remapped | NT_187682.1 |
NW_004504305.1 | Chr22|NW_004504305.1 | 4 | 4 | Remapped | NW_004504305.1 |
NW_009646207.1 | Chr22|NW_009646207.1 | 3 | 3 | Remapped | NW_009646207.1 |
NW_015148969.1 | Chr22|NW_015148969.1 | 18 | 18 | Remapped | NW_015148969.1 |
NT_187630.1 | Chr22|NT_187630.1 | 19 | 19 | Remapped | NT_187630.1 |
NT_187631.1 | Chr22|NT_187631.1 | 7 | 7 | Remapped | NT_187631.1 |
NT_187632.1 | Chr22|NT_187632.1 | 27 | 27 | Remapped | NT_187632.1 |
NW_003315971.2 | Chr22|NW_003315971.2 | 4 | 4 | Remapped | NW_003315971.2 |
NW_003315972.2 | Chr22|NW_003315972.2 | 8 | 8 | Remapped | NW_003315972.2 |
NT_187667.1 | ChrX|NT_187667.1 | 128 | 137 | Remapped | NT_187667.1 |
NW_017363820.1 | ChrX|NW_017363820.1 | 18 | 18 | Remapped | NW_017363820.1 |
NT_187634.1 | ChrX|NT_187634.1 | 127 | 136 | Remapped | NT_187634.1 |
NT_187635.1 | ChrX|NT_187635.1 | 7 | 7 | Remapped | NT_187635.1 |
NW_018654725.1 | ChrY|NW_018654725.1 | 1 | 1 | Remapped | NW_018654725.1 |
NW_018654726.1 | ChrY|NW_018654726.1 | 5 | 5 | Remapped | NW_018654726.1 |
Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
---|---|---|---|---|---|
NC_000001.10 | Chr1 | 22,532 | 23,216 | Submitted | NC_000001.10 |
NC_000002.11 | Chr2 | 24,262 | 24,672 | Submitted | NC_000002.11 |
NC_000003.11 | Chr3 | 20,723 | 20,894 | Submitted | NC_000003.11 |
NC_000004.11 | Chr4 | 20,767 | 20,929 | Submitted | NC_000004.11 |
NC_000005.9 | Chr5 | 19,175 | 19,690 | Submitted | NC_000005.9 |
NC_000006.11 | Chr6 | 17,829 | 18,003 | Submitted | NC_000006.11 |
NC_000007.13 | Chr7 | 17,970 | 18,664 | Submitted | NC_000007.13 |
NC_000008.10 | Chr8 | 15,961 | 16,508 | Submitted | NC_000008.10 |
NC_000009.11 | Chr9 | 13,157 | 13,978 | Submitted | NC_000009.11 |
NC_000010.10 | Chr10 | 13,779 | 14,018 | Submitted | NC_000010.10 |
NC_000011.9 | Chr11 | 14,291 | 14,617 | Submitted | NC_000011.9 |
NC_000012.11 | Chr12 | 14,566 | 14,721 | Submitted | NC_000012.11 |
NC_000013.10 | Chr13 | 10,456 | 10,558 | Submitted | NC_000013.10 |
NC_000014.8 | Chr14 | 9,311 | 9,598 | Submitted | NC_000014.8 |
NC_000015.9 | Chr15 | 8,482 | 8,928 | Submitted | NC_000015.9 |
NC_000016.9 | Chr16 | 9,135 | 9,629 | Submitted | NC_000016.9 |
NC_000017.10 | Chr17 | 8,962 | 9,371 | Submitted | NC_000017.10 |
NC_000018.9 | Chr18 | 8,295 | 8,349 | Submitted | NC_000018.9 |
NC_000019.9 | Chr19 | 8,025 | 8,364 | Submitted | NC_000019.9 |
NC_000020.10 | Chr20 | 6,623 | 6,687 | Submitted | NC_000020.10 |
NC_000021.8 | Chr21 | 4,019 | 4,152 | Submitted | NC_000021.8 |
NC_000022.10 | Chr22 | 4,225 | 4,653 | Submitted | NC_000022.10 |
NC_000023.10 | ChrX | 11,259 | 11,829 | Submitted | NC_000023.10 |
NC_000024.9 | ChrY | 929 | 1,553 | Submitted | NC_000024.9 |
Variant Region remap status | Variant Call remap status | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
NC_000001.10 | Chr1 | 22,532 | 21,637 | 241 | 35 | 10 | 609 | 23,216 | 22,127 | 309 | 120 | 17 | 643 |
NC_000002.11 | Chr2 | 24,262 | 23,754 | 85 | 17 | 10 | 396 | 24,672 | 24,108 | 85 | 41 | 13 | 425 |
NC_000003.11 | Chr3 | 20,723 | 20,143 | 73 | 4 | 0 | 503 | 20,894 | 20,258 | 83 | 4 | 0 | 549 |
NC_000004.11 | Chr4 | 20,767 | 20,338 | 56 | 8 | 0 | 365 | 20,929 | 20,491 | 63 | 8 | 0 | 367 |
NC_000005.9 | Chr5 | 19,175 | 18,575 | 57 | 1 | 0 | 542 | 19,690 | 18,843 | 57 | 1 | 0 | 789 |
NC_000006.11 | Chr6 | 17,829 | 17,357 | 77 | 9 | 1 | 385 | 18,003 | 17,515 | 85 | 17 | 1 | 385 |
NC_000007.13 | Chr7 | 17,970 | 17,233 | 197 | 19 | 8 | 513 | 18,664 | 17,819 | 232 | 31 | 21 | 561 |
NC_000008.10 | Chr8 | 15,961 | 14,491 | 57 | 12 | 1 | 1,400 | 16,508 | 14,748 | 57 | 15 | 1 | 1,687 |
NC_000009.11 | Chr9 | 13,157 | 12,797 | 135 | 45 | 13 | 167 | 13,978 | 13,465 | 229 | 95 | 22 | 167 |
NC_000010.10 | Chr10 | 13,779 | 13,518 | 80 | 17 | 4 | 160 | 14,018 | 13,723 | 98 | 31 | 4 | 162 |
NC_000011.9 | Chr11 | 14,291 | 13,721 | 77 | 3 | 5 | 485 | 14,617 | 14,038 | 86 | 3 | 5 | 485 |
NC_000012.11 | Chr12 | 14,566 | 13,983 | 20 | 1 | 3 | 559 | 14,721 | 14,101 | 20 | 10 | 3 | 587 |
NC_000013.10 | Chr13 | 10,456 | 10,220 | 21 | 4 | 0 | 211 | 10,558 | 10,270 | 21 | 4 | 0 | 263 |
NC_000014.8 | Chr14 | 9,311 | 8,945 | 48 | 11 | 5 | 302 | 9,598 | 9,212 | 48 | 31 | 5 | 302 |
NC_000015.9 | Chr15 | 8,482 | 7,912 | 38 | 7 | 1 | 524 | 8,928 | 8,286 | 44 | 19 | 1 | 578 |
NC_000016.9 | Chr16 | 9,135 | 8,436 | 24 | 2 | 2 | 671 | 9,629 | 8,851 | 24 | 2 | 2 | 750 |
NC_000017.10 | Chr17 | 8,962 | 7,960 | 51 | 8 | 0 | 943 | 9,371 | 8,192 | 59 | 8 | 0 | 1,112 |
NC_000018.9 | Chr18 | 8,295 | 7,992 | 27 | 4 | 0 | 272 | 8,349 | 8,046 | 27 | 4 | 0 | 272 |
NC_000019.9 | Chr19 | 8,025 | 7,436 | 80 | 13 | 4 | 492 | 8,364 | 7,735 | 101 | 22 | 4 | 502 |
NC_000020.10 | Chr20 | 6,623 | 6,538 | 27 | 1 | 0 | 57 | 6,687 | 6,602 | 27 | 1 | 0 | 57 |
NC_000021.8 | Chr21 | 4,019 | 3,838 | 92 | 0 | 0 | 89 | 4,152 | 3,971 | 92 | 0 | 0 | 89 |
NC_000022.10 | Chr22 | 4,225 | 3,985 | 87 | 9 | 6 | 138 | 4,653 | 4,376 | 94 | 21 | 6 | 156 |
NC_000023.10 | ChrX | 11,259 | 10,602 | 424 | 61 | 17 | 155 | 11,829 | 10,975 | 546 | 92 | 47 | 169 |
NC_000024.9 | ChrY | 929 | 897 | 20 | 4 | 0 | 8 | 1,553 | 1,417 | 106 | 4 | 0 | 26 |
Samplesets
Number of Samplesets: 1
- Name:
- gnomAD SV samples
- Sampleset Type:
- Control
- Description:
- The initial release of gnomAD-SV includes 32X Illumina WGS of 14,891 human samples aggregated across population genetic and common disease association studies. Samples were assigned to one of five continental populations based on principle components analysis of common SV genotypes, resulting in the following classification: 46% European, 35% African/African-American, 9% East Asian, 8% Latino, and 3% other/admixed.
- Size:
- 14,891 (sample data not available)
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- None reported
Experimental Details
Experiment ID | Type | Method | Analysis | Number of Variant Calls |
---|---|---|---|---|
1 | Discovery | Sequencing | Other | 313,581 |