nstd140 (Fan et al. 2017)
- Organism:
- Human
- Study Type:
- Control Set
- Submitter:
- Xian Fan
- Description:
- We developed a hybrid structural variant assembly (HySA) approach that integrates sequencing reads from next-generation sequencing and single-molecule sequencing technologies to accurately assemble and detect structural variations in human genomes. We applied HySA to a haploid hydatidiform mole genome (CHM1) and a diploid human genome (NA12878) for SV detection. See Variant Summary counts for nstd140 in dbVar Variant Summary.
- Project:
- PRJNA360454
- Publication(s):
- Fan et al. 2017
Detailed Information: Download 22644 Variant Regions, Download 22644 Variant Calls, Download Both, FTP
Variant Summary
Assembly used for analysis:
Submitted; Remapped: GRCh38.p12 (hg38)
Submitted; Remapped: GRCh37.p13 (hg19)
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.11 | Chr1 | 1,083 | 1,083 | Submitted | NC_000001.11 |
| NC_000002.12 | Chr2 | 1,102 | 1,102 | Submitted | NC_000002.12 |
| NC_000003.12 | Chr3 | 727 | 727 | Submitted | NC_000003.12 |
| NC_000004.12 | Chr4 | 846 | 846 | Submitted | NC_000004.12 |
| NC_000005.10 | Chr5 | 781 | 781 | Submitted | NC_000005.10 |
| NC_000006.12 | Chr6 | 856 | 856 | Submitted | NC_000006.12 |
| NC_000007.14 | Chr7 | 971 | 971 | Submitted | NC_000007.14 |
| NC_000008.11 | Chr8 | 645 | 645 | Submitted | NC_000008.11 |
| NC_000009.12 | Chr9 | 786 | 786 | Submitted | NC_000009.12 |
| NC_000010.11 | Chr10 | 790 | 790 | Submitted | NC_000010.11 |
| NC_000011.10 | Chr11 | 611 | 611 | Submitted | NC_000011.10 |
| NC_000012.12 | Chr12 | 680 | 680 | Submitted | NC_000012.12 |
| NC_000013.11 | Chr13 | 589 | 589 | Submitted | NC_000013.11 |
| NC_000014.9 | Chr14 | 349 | 349 | Submitted | NC_000014.9 |
| NC_000015.10 | Chr15 | 395 | 395 | Submitted | NC_000015.10 |
| NC_000016.10 | Chr16 | 506 | 506 | Submitted | NC_000016.10 |
| NC_000017.11 | Chr17 | 494 | 494 | Submitted | NC_000017.11 |
| NC_000018.10 | Chr18 | 480 | 480 | Submitted | NC_000018.10 |
| NC_000019.10 | Chr19 | 449 | 449 | Submitted | NC_000019.10 |
| NC_000020.11 | Chr20 | 479 | 479 | Submitted | NC_000020.11 |
| NC_000021.9 | Chr21 | 428 | 428 | Submitted | NC_000021.9 |
| NC_000022.11 | Chr22 | 354 | 354 | Submitted | NC_000022.11 |
| NC_000023.11 | ChrX | 629 | 629 | Submitted | NC_000023.11 |
| NC_000024.10 | ChrY | 51 | 51 | Submitted | NC_000024.10 |
| GL582966.2 | Chr2|GL582966.2 | 1 | 1 | Submitted | GL582966.2 |
| KI270926.1 | Chr8|KI270926.1 | 1 | 1 | Submitted | KI270926.1 |
| GL383541.1 | Chr9|GL383541.1 | 1 | 1 | Submitted | GL383541.1 |
| KI270826.1 | Chr11|KI270826.1 | 1 | 1 | Submitted | KI270826.1 |
| KI270905.1 | Chr15|KI270905.1 | 1 | 1 | Submitted | KI270905.1 |
| KI270853.1 | Chr16|KI270853.1 | 1 | 1 | Submitted | KI270853.1 |
| KI270854.1 | Chr16|KI270854.1 | 2 | 2 | Submitted | KI270854.1 |
| GL383563.3 | Chr17|GL383563.3 | 1 | 1 | Submitted | GL383563.3 |
| JH159148.1 | Chr17|JH159148.1 | 1 | 1 | Submitted | JH159148.1 |
| GL383570.1 | Chr18|GL383570.1 | 1 | 1 | Submitted | GL383570.1 |
| KI270731.1 | Chr22|KI270731.1 | 1 | 1 | Submitted | KI270731.1 |
| NC_000001.11 | Chr1 | 533 | 533 | Remapped | NC_000001.11 |
| NC_000002.12 | Chr2 | 570 | 570 | Remapped | NC_000002.12 |
| NC_000003.12 | Chr3 | 408 | 408 | Remapped | NC_000003.12 |
| NC_000004.12 | Chr4 | 479 | 479 | Remapped | NC_000004.12 |
| NC_000005.10 | Chr5 | 404 | 404 | Remapped | NC_000005.10 |
| NC_000006.12 | Chr6 | 451 | 451 | Remapped | NC_000006.12 |
| NC_000007.14 | Chr7 | 489 | 489 | Remapped | NC_000007.14 |
| NC_000008.11 | Chr8 | 359 | 359 | Remapped | NC_000008.11 |
| NC_000009.12 | Chr9 | 352 | 352 | Remapped | NC_000009.12 |
| NC_000010.11 | Chr10 | 387 | 387 | Remapped | NC_000010.11 |
| NC_000011.10 | Chr11 | 360 | 360 | Remapped | NC_000011.10 |
| NC_000012.12 | Chr12 | 333 | 333 | Remapped | NC_000012.12 |
| NC_000013.11 | Chr13 | 287 | 287 | Remapped | NC_000013.11 |
| NC_000014.9 | Chr14 | 197 | 197 | Remapped | NC_000014.9 |
| NC_000015.10 | Chr15 | 198 | 198 | Remapped | NC_000015.10 |
| NC_000016.10 | Chr16 | 248 | 248 | Remapped | NC_000016.10 |
| NC_000017.11 | Chr17 | 213 | 213 | Remapped | NC_000017.11 |
| NC_000018.10 | Chr18 | 227 | 227 | Remapped | NC_000018.10 |
| NC_000019.10 | Chr19 | 203 | 203 | Remapped | NC_000019.10 |
| NC_000020.11 | Chr20 | 200 | 200 | Remapped | NC_000020.11 |
| NC_000021.9 | Chr21 | 160 | 160 | Remapped | NC_000021.9 |
| NC_000022.11 | Chr22 | 146 | 146 | Remapped | NC_000022.11 |
| NC_000023.11 | ChrX | 277 | 277 | Remapped | NC_000023.11 |
| NC_000024.10 | ChrY | 12 | 12 | Remapped | NC_000024.10 |
| NT_187513.1 | Unplaced|NT_187513.1 | 2 | 2 | Remapped | NT_187513.1 |
| NT_187361.1 | Chr1|NT_187361.1 | 1 | 1 | Remapped | NT_187361.1 |
| NT_187364.1 | Chr1|NT_187364.1 | 1 | 1 | Remapped | NT_187364.1 |
| NT_187515.1 | Chr1|NT_187515.1 | 1 | 1 | Remapped | NT_187515.1 |
| NT_187516.1 | Chr1|NT_187516.1 | 1 | 1 | Remapped | NT_187516.1 |
| NT_187519.1 | Chr1|NT_187519.1 | 1 | 1 | Remapped | NT_187519.1 |
| NT_187520.1 | Chr1|NT_187520.1 | 1 | 1 | Remapped | NT_187520.1 |
| NT_187521.1 | Chr1|NT_187521.1 | 1 | 1 | Remapped | NT_187521.1 |
| NW_009646194.1 | Chr1|NW_009646194.1 | 2 | 2 | Remapped | NW_009646194.1 |
| NW_011332688.1 | Chr1|NW_011332688.1 | 4 | 4 | Remapped | NW_011332688.1 |
| NW_014040925.1 | Chr1|NW_014040925.1 | 2 | 2 | Remapped | NW_014040925.1 |
| NW_014040926.1 | Chr1|NW_014040926.1 | 2 | 2 | Remapped | NW_014040926.1 |
| NW_014040927.1 | Chr1|NW_014040927.1 | 1 | 1 | Remapped | NW_014040927.1 |
| NT_187524.1 | Chr2|NT_187524.1 | 2 | 2 | Remapped | NT_187524.1 |
| NT_187525.1 | Chr2|NT_187525.1 | 1 | 1 | Remapped | NT_187525.1 |
| NT_187526.1 | Chr2|NT_187526.1 | 2 | 2 | Remapped | NT_187526.1 |
| NT_187527.1 | Chr2|NT_187527.1 | 1 | 1 | Remapped | NT_187527.1 |
| NT_187528.1 | Chr2|NT_187528.1 | 1 | 1 | Remapped | NT_187528.1 |
| NT_187529.1 | Chr2|NT_187529.1 | 9 | 9 | Remapped | NT_187529.1 |
| NT_187648.1 | Chr2|NT_187648.1 | 3 | 3 | Remapped | NT_187648.1 |
| NW_011332689.1 | Chr2|NW_011332689.1 | 3 | 3 | Remapped | NW_011332689.1 |
| NW_011332690.1 | Chr2|NW_011332690.1 | 2 | 2 | Remapped | NW_011332690.1 |
| NW_015495299.1 | Chr2|NW_015495299.1 | 2 | 2 | Remapped | NW_015495299.1 |
| NW_018654710.1 | Chr2|NW_018654710.1 | 1 | 1 | Remapped | NW_018654710.1 |
| NT_187678.1 | Chr3|NT_187678.1 | 4 | 4 | Remapped | NT_187678.1 |
| NT_187688.1 | Chr3|NT_187688.1 | 4 | 4 | Remapped | NT_187688.1 |
| NT_187689.1 | Chr3|NT_187689.1 | 5 | 5 | Remapped | NT_187689.1 |
| NT_187690.1 | Chr3|NT_187690.1 | 4 | 4 | Remapped | NT_187690.1 |
| NT_187691.1 | Chr3|NT_187691.1 | 4 | 4 | Remapped | NT_187691.1 |
| NT_187532.1 | Chr3|NT_187532.1 | 5 | 5 | Remapped | NT_187532.1 |
| NT_187533.1 | Chr3|NT_187533.1 | 1 | 1 | Remapped | NT_187533.1 |
| NT_187536.1 | Chr3|NT_187536.1 | 1 | 1 | Remapped | NT_187536.1 |
| NT_187539.1 | Chr3|NT_187539.1 | 1 | 1 | Remapped | NT_187539.1 |
| NT_187649.1 | Chr3|NT_187649.1 | 3 | 3 | Remapped | NT_187649.1 |
| NW_011332691.1 | Chr3|NW_011332691.1 | 1 | 1 | Remapped | NW_011332691.1 |
| NW_012132916.1 | Chr3|NW_012132916.1 | 1 | 1 | Remapped | NW_012132916.1 |
| NW_017363813.1 | Chr3|NW_017363813.1 | 1 | 1 | Remapped | NW_017363813.1 |
| NW_019805490.1 | Chr3|NW_019805490.1 | 1 | 1 | Remapped | NW_019805490.1 |
| NW_019805491.1 | Chr3|NW_019805491.1 | 1 | 1 | Remapped | NW_019805491.1 |
| NT_187679.1 | Chr4|NT_187679.1 | 13 | 13 | Remapped | NT_187679.1 |
| NT_113793.3 | Chr4|NT_113793.3 | 1 | 1 | Remapped | NT_113793.3 |
| NT_187540.1 | Chr4|NT_187540.1 | 1 | 1 | Remapped | NT_187540.1 |
| NT_187541.1 | Chr4|NT_187541.1 | 1 | 1 | Remapped | NT_187541.1 |
| NT_187542.1 | Chr4|NT_187542.1 | 2 | 2 | Remapped | NT_187542.1 |
| NT_187543.1 | Chr4|NT_187543.1 | 9 | 9 | Remapped | NT_187543.1 |
| NT_187545.1 | Chr4|NT_187545.1 | 5 | 5 | Remapped | NT_187545.1 |
| NT_187650.1 | Chr4|NT_187650.1 | 10 | 10 | Remapped | NT_187650.1 |
| NW_017363814.1 | Chr4|NW_017363814.1 | 2 | 2 | Remapped | NW_017363814.1 |
| NT_187547.1 | Chr5|NT_187547.1 | 1 | 1 | Remapped | NT_187547.1 |
| NT_187548.1 | Chr5|NT_187548.1 | 3 | 3 | Remapped | NT_187548.1 |
| NT_187549.1 | Chr5|NT_187549.1 | 1 | 1 | Remapped | NT_187549.1 |
| NT_187550.1 | Chr5|NT_187550.1 | 3 | 3 | Remapped | NT_187550.1 |
| NT_187651.1 | Chr5|NT_187651.1 | 1 | 1 | Remapped | NT_187651.1 |
| NT_187652.1 | Chr5|NT_187652.1 | 4 | 4 | Remapped | NT_187652.1 |
| NW_003315917.2 | Chr5|NW_003315917.2 | 2 | 2 | Remapped | NW_003315917.2 |
| NW_003315919.1 | Chr5|NW_003315919.1 | 1 | 1 | Remapped | NW_003315919.1 |
| NW_009646199.1 | Chr5|NW_009646199.1 | 1 | 1 | Remapped | NW_009646199.1 |
| NT_187552.1 | Chr6|NT_187552.1 | 1 | 1 | Remapped | NT_187552.1 |
| NT_187553.1 | Chr6|NT_187553.1 | 1 | 1 | Remapped | NT_187553.1 |
| NW_004166862.2 | Chr6|NW_004166862.2 | 10 | 10 | Remapped | NW_004166862.2 |
| NW_009646200.1 | Chr6|NW_009646200.1 | 2 | 2 | Remapped | NW_009646200.1 |
| NW_012132918.1 | Chr6|NW_012132918.1 | 2 | 2 | Remapped | NW_012132918.1 |
| NW_013171803.1 | Chr6|NW_013171803.1 | 1 | 1 | Remapped | NW_013171803.1 |
| NW_017363815.1 | Chr6|NW_017363815.1 | 1 | 1 | Remapped | NW_017363815.1 |
| NT_187558.1 | Chr7|NT_187558.1 | 1 | 1 | Remapped | NT_187558.1 |
| NT_187559.1 | Chr7|NT_187559.1 | 1 | 1 | Remapped | NT_187559.1 |
| NT_187560.1 | Chr7|NT_187560.1 | 10 | 10 | Remapped | NT_187560.1 |
| NT_187562.1 | Chr7|NT_187562.1 | 3 | 3 | Remapped | NT_187562.1 |
| NT_187563.1 | Chr7|NT_187563.1 | 2 | 2 | Remapped | NT_187563.1 |
| NT_187653.1 | Chr7|NT_187653.1 | 1 | 1 | Remapped | NT_187653.1 |
| NW_012132919.1 | Chr7|NW_012132919.1 | 1 | 1 | Remapped | NW_012132919.1 |
| NW_017852929.1 | Chr7|NW_017852929.1 | 1 | 1 | Remapped | NW_017852929.1 |
| NW_018654714.1 | Chr7|NW_018654714.1 | 1 | 1 | Remapped | NW_018654714.1 |
| NW_018654715.1 | Chr7|NW_018654715.1 | 1 | 1 | Remapped | NW_018654715.1 |
| NT_187680.1 | Chr8|NT_187680.1 | 3 | 3 | Remapped | NT_187680.1 |
| NT_187565.1 | Chr8|NT_187565.1 | 6 | 6 | Remapped | NT_187565.1 |
| NT_187567.1 | Chr8|NT_187567.1 | 1 | 1 | Remapped | NT_187567.1 |
| NT_187568.1 | Chr8|NT_187568.1 | 2 | 2 | Remapped | NT_187568.1 |
| NT_187570.1 | Chr8|NT_187570.1 | 1 | 1 | Remapped | NT_187570.1 |
| NT_187571.1 | Chr8|NT_187571.1 | 3 | 3 | Remapped | NT_187571.1 |
| NT_187573.1 | Chr8|NT_187573.1 | 1 | 1 | Remapped | NT_187573.1 |
| NT_187574.1 | Chr8|NT_187574.1 | 1 | 1 | Remapped | NT_187574.1 |
| NT_187575.1 | Chr8|NT_187575.1 | 1 | 1 | Remapped | NT_187575.1 |
| NT_187576.1 | Chr8|NT_187576.1 | 15 | 15 | Remapped | NT_187576.1 |
| NT_187577.1 | Chr8|NT_187577.1 | 1 | 1 | Remapped | NT_187577.1 |
| NT_187654.1 | Chr8|NT_187654.1 | 2 | 2 | Remapped | NT_187654.1 |
| NW_017852932.1 | Chr8|NW_017852932.1 | 1 | 1 | Remapped | NW_017852932.1 |
| NW_018654716.1 | Chr8|NW_018654716.1 | 3 | 3 | Remapped | NW_018654716.1 |
| NW_018654717.1 | Chr8|NW_018654717.1 | 6 | 6 | Remapped | NW_018654717.1 |
| NW_009646201.1 | Chr9|NW_009646201.1 | 6 | 6 | Remapped | NW_009646201.1 |
| NT_187579.1 | Chr10|NT_187579.1 | 2 | 2 | Remapped | NT_187579.1 |
| NW_003315934.1 | Chr10|NW_003315934.1 | 1 | 1 | Remapped | NW_003315934.1 |
| NW_009646202.1 | Chr10|NW_009646202.1 | 1 | 1 | Remapped | NW_009646202.1 |
| NT_187681.1 | Chr11|NT_187681.1 | 5 | 5 | Remapped | NT_187681.1 |
| NT_187656.1 | Chr11|NT_187656.1 | 1 | 1 | Remapped | NT_187656.1 |
| NT_187657.1 | Chr11|NT_187657.1 | 4 | 4 | Remapped | NT_187657.1 |
| NT_187581.1 | Chr11|NT_187581.1 | 1 | 1 | Remapped | NT_187581.1 |
| NT_187582.1 | Chr11|NT_187582.1 | 2 | 2 | Remapped | NT_187582.1 |
| NT_187584.1 | Chr11|NT_187584.1 | 7 | 7 | Remapped | NT_187584.1 |
| NT_187586.1 | Chr11|NT_187586.1 | 3 | 3 | Remapped | NT_187586.1 |
| NW_013171808.1 | Chr11|NW_013171808.1 | 1 | 1 | Remapped | NW_013171808.1 |
| NW_015148966.1 | Chr11|NW_015148966.1 | 6 | 6 | Remapped | NW_015148966.1 |
| NW_019805495.1 | Chr11|NW_019805495.1 | 2 | 2 | Remapped | NW_019805495.1 |
| NW_019805496.1 | Chr11|NW_019805496.1 | 2 | 2 | Remapped | NW_019805496.1 |
| NW_019805497.1 | Chr11|NW_019805497.1 | 2 | 2 | Remapped | NW_019805497.1 |
| NT_187658.1 | Chr12|NT_187658.1 | 2 | 2 | Remapped | NT_187658.1 |
| NT_187587.1 | Chr12|NT_187587.1 | 1 | 1 | Remapped | NT_187587.1 |
| NT_187589.1 | Chr12|NT_187589.1 | 1 | 1 | Remapped | NT_187589.1 |
| NW_003315939.2 | Chr12|NW_003315939.2 | 2 | 2 | Remapped | NW_003315939.2 |
| NW_003571049.1 | Chr12|NW_003571049.1 | 1 | 1 | Remapped | NW_003571049.1 |
| NW_003571050.1 | Chr12|NW_003571050.1 | 3 | 3 | Remapped | NW_003571050.1 |
| NW_013171809.1 | Chr12|NW_013171809.1 | 10 | 10 | Remapped | NW_013171809.1 |
| NW_015148967.1 | Chr12|NW_015148967.1 | 1 | 1 | Remapped | NW_015148967.1 |
| NW_018654718.1 | Chr12|NW_018654718.1 | 4 | 4 | Remapped | NW_018654718.1 |
| NW_019805499.1 | Chr12|NW_019805499.1 | 1 | 1 | Remapped | NW_019805499.1 |
| NT_187592.1 | Chr13|NT_187592.1 | 3 | 3 | Remapped | NT_187592.1 |
| NT_187595.1 | Chr13|NT_187595.1 | 1 | 1 | Remapped | NT_187595.1 |
| NT_187596.1 | Chr13|NT_187596.1 | 1 | 1 | Remapped | NT_187596.1 |
| NT_187597.1 | Chr13|NT_187597.1 | 1 | 1 | Remapped | NT_187597.1 |
| NW_011332698.1 | Chr13|NW_011332698.1 | 6 | 6 | Remapped | NW_011332698.1 |
| NW_011332699.1 | Chr13|NW_011332699.1 | 1 | 1 | Remapped | NW_011332699.1 |
| NW_011332700.1 | Chr13|NW_011332700.1 | 1 | 1 | Remapped | NW_011332700.1 |
| NW_013171811.1 | Chr13|NW_013171811.1 | 2 | 2 | Remapped | NW_013171811.1 |
| NT_113796.3 | Chr14|NT_113796.3 | 2 | 2 | Remapped | NT_113796.3 |
| NT_187600.1 | Chr14|NT_187600.1 | 16 | 16 | Remapped | NT_187600.1 |
| NT_187601.1 | Chr14|NT_187601.1 | 4 | 4 | Remapped | NT_187601.1 |
| NW_018654721.1 | Chr14|NW_018654721.1 | 1 | 1 | Remapped | NW_018654721.1 |
| NW_018654722.1 | Chr14|NW_018654722.1 | 4 | 4 | Remapped | NW_018654722.1 |
| NT_187659.1 | Chr15|NT_187659.1 | 1 | 1 | Remapped | NT_187659.1 |
| NT_187660.1 | Chr15|NT_187660.1 | 6 | 6 | Remapped | NT_187660.1 |
| NT_187602.1 | Chr15|NT_187602.1 | 1 | 1 | Remapped | NT_187602.1 |
| NT_187604.1 | Chr15|NT_187604.1 | 1 | 1 | Remapped | NT_187604.1 |
| NW_003315943.1 | Chr15|NW_003315943.1 | 1 | 1 | Remapped | NW_003315943.1 |
| NW_003315944.2 | Chr15|NW_003315944.2 | 2 | 2 | Remapped | NW_003315944.2 |
| NW_011332701.1 | Chr15|NW_011332701.1 | 6 | 6 | Remapped | NW_011332701.1 |
| NW_012132920.1 | Chr15|NW_012132920.1 | 1 | 1 | Remapped | NW_012132920.1 |
| NT_187607.1 | Chr16|NT_187607.1 | 3 | 3 | Remapped | NT_187607.1 |
| NT_187609.1 | Chr16|NT_187609.1 | 2 | 2 | Remapped | NT_187609.1 |
| NT_187610.1 | Chr16|NT_187610.1 | 1 | 1 | Remapped | NT_187610.1 |
| NW_013171812.1 | Chr16|NW_013171812.1 | 1 | 1 | Remapped | NW_013171812.1 |
| NW_013171813.1 | Chr16|NW_013171813.1 | 1 | 1 | Remapped | NW_013171813.1 |
| NW_017852933.1 | Chr16|NW_017852933.1 | 1 | 1 | Remapped | NW_017852933.1 |
| NW_019805500.1 | Chr16|NW_019805500.1 | 1 | 1 | Remapped | NW_019805500.1 |
| NT_187661.1 | Chr17|NT_187661.1 | 2 | 2 | Remapped | NT_187661.1 |
| NT_187662.1 | Chr17|NT_187662.1 | 2 | 2 | Remapped | NT_187662.1 |
| NT_187663.1 | Chr17|NT_187663.1 | 1 | 1 | Remapped | NT_187663.1 |
| NT_187664.1 | Chr17|NT_187664.1 | 1 | 1 | Remapped | NT_187664.1 |
| NW_003871093.1 | Chr17|NW_003871093.1 | 1 | 1 | Remapped | NW_003871093.1 |
| NT_187611.1 | Chr17|NT_187611.1 | 2 | 2 | Remapped | NT_187611.1 |
| NT_187613.1 | Chr17|NT_187613.1 | 3 | 3 | Remapped | NT_187613.1 |
| NT_187614.1 | Chr17|NT_187614.1 | 5 | 5 | Remapped | NT_187614.1 |
| NT_187615.1 | Chr17|NT_187615.1 | 2 | 2 | Remapped | NT_187615.1 |
| NW_003315952.3 | Chr17|NW_003315952.3 | 2 | 2 | Remapped | NW_003315952.3 |
| NW_003315954.1 | Chr17|NW_003315954.1 | 1 | 1 | Remapped | NW_003315954.1 |
| NW_003315955.1 | Chr17|NW_003315955.1 | 1 | 1 | Remapped | NW_003315955.1 |
| NW_003871091.1 | Chr17|NW_003871091.1 | 1 | 1 | Remapped | NW_003871091.1 |
| NW_017363817.1 | Chr17|NW_017363817.1 | 6 | 6 | Remapped | NW_017363817.1 |
| NW_017363818.1 | Chr17|NW_017363818.1 | 1 | 1 | Remapped | NW_017363818.1 |
| NT_187665.1 | Chr18|NT_187665.1 | 6 | 6 | Remapped | NT_187665.1 |
| NT_187666.1 | Chr18|NT_187666.1 | 1 | 1 | Remapped | NT_187666.1 |
| NT_187617.1 | Chr18|NT_187617.1 | 2 | 2 | Remapped | NT_187617.1 |
| NW_003315958.1 | Chr18|NW_003315958.1 | 6 | 6 | Remapped | NW_003315958.1 |
| NW_003315961.1 | Chr18|NW_003315961.1 | 1 | 1 | Remapped | NW_003315961.1 |
| NW_013171814.1 | Chr18|NW_013171814.1 | 1 | 1 | Remapped | NW_013171814.1 |
| NW_014040928.1 | Chr18|NW_014040928.1 | 1 | 1 | Remapped | NW_014040928.1 |
| NW_018654724.1 | Chr18|NW_018654724.1 | 1 | 1 | Remapped | NW_018654724.1 |
| NW_019805503.1 | Chr18|NW_019805503.1 | 1 | 1 | Remapped | NW_019805503.1 |
| NT_187693.1 | Chr19|NT_187693.1 | 3 | 3 | Remapped | NT_187693.1 |
| NW_003571061.2 | Chr19|NW_003571061.2 | 2 | 2 | Remapped | NW_003571061.2 |
| NW_003571057.2 | Chr19|NW_003571057.2 | 1 | 1 | Remapped | NW_003571057.2 |
| NW_003571058.2 | Chr19|NW_003571058.2 | 1 | 1 | Remapped | NW_003571058.2 |
| NW_003571059.2 | Chr19|NW_003571059.2 | 1 | 1 | Remapped | NW_003571059.2 |
| NW_003571060.1 | Chr19|NW_003571060.1 | 1 | 1 | Remapped | NW_003571060.1 |
| NW_003571056.2 | Chr19|NW_003571056.2 | 1 | 1 | Remapped | NW_003571056.2 |
| NW_003571055.2 | Chr19|NW_003571055.2 | 2 | 2 | Remapped | NW_003571055.2 |
| NT_187620.1 | Chr19|NT_187620.1 | 1 | 1 | Remapped | NT_187620.1 |
| NT_187622.1 | Chr19|NT_187622.1 | 1 | 1 | Remapped | NT_187622.1 |
| NW_003315962.1 | Chr19|NW_003315962.1 | 1 | 1 | Remapped | NW_003315962.1 |
| NW_003315963.1 | Chr19|NW_003315963.1 | 1 | 1 | Remapped | NW_003315963.1 |
| NW_003315964.2 | Chr19|NW_003315964.2 | 1 | 1 | Remapped | NW_003315964.2 |
| NW_003315965.1 | Chr19|NW_003315965.1 | 1 | 1 | Remapped | NW_003315965.1 |
| NW_003571054.1 | Chr19|NW_003571054.1 | 2 | 2 | Remapped | NW_003571054.1 |
| NW_009646206.1 | Chr19|NW_009646206.1 | 1 | 1 | Remapped | NW_009646206.1 |
| NT_187623.1 | Chr20|NT_187623.1 | 7 | 7 | Remapped | NT_187623.1 |
| NT_187624.1 | Chr20|NT_187624.1 | 1 | 1 | Remapped | NT_187624.1 |
| NW_003315966.2 | Chr20|NW_003315966.2 | 1 | 1 | Remapped | NW_003315966.2 |
| NT_187626.1 | Chr21|NT_187626.1 | 3 | 3 | Remapped | NT_187626.1 |
| NT_187628.1 | Chr21|NT_187628.1 | 1 | 1 | Remapped | NT_187628.1 |
| NW_003315967.2 | Chr21|NW_003315967.2 | 1 | 1 | Remapped | NW_003315967.2 |
| NW_003315968.2 | Chr21|NW_003315968.2 | 2 | 2 | Remapped | NW_003315968.2 |
| NW_003315969.2 | Chr21|NW_003315969.2 | 1 | 1 | Remapped | NW_003315969.2 |
| NW_015148969.1 | Chr22|NW_015148969.1 | 1 | 1 | Remapped | NW_015148969.1 |
| NT_187629.1 | Chr22|NT_187629.1 | 2 | 2 | Remapped | NT_187629.1 |
| NT_187630.1 | Chr22|NT_187630.1 | 1 | 1 | Remapped | NT_187630.1 |
| NT_187631.1 | Chr22|NT_187631.1 | 1 | 1 | Remapped | NT_187631.1 |
| NT_187633.1 | Chr22|NT_187633.1 | 2 | 2 | Remapped | NT_187633.1 |
| NT_187667.1 | ChrX|NT_187667.1 | 15 | 15 | Remapped | NT_187667.1 |
| NW_017363820.1 | ChrX|NW_017363820.1 | 1 | 1 | Remapped | NW_017363820.1 |
| NT_187634.1 | ChrX|NT_187634.1 | 15 | 15 | Remapped | NT_187634.1 |
| NW_009646209.1 | ChrY|NW_009646209.1 | 3 | 3 | Remapped | NW_009646209.1 |
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.10 | Chr1 | 540 | 540 | Submitted | NC_000001.10 |
| NC_000002.11 | Chr2 | 576 | 576 | Submitted | NC_000002.11 |
| NC_000003.11 | Chr3 | 409 | 409 | Submitted | NC_000003.11 |
| NC_000004.11 | Chr4 | 479 | 479 | Submitted | NC_000004.11 |
| NC_000005.9 | Chr5 | 404 | 404 | Submitted | NC_000005.9 |
| NC_000006.11 | Chr6 | 451 | 451 | Submitted | NC_000006.11 |
| NC_000007.13 | Chr7 | 494 | 494 | Submitted | NC_000007.13 |
| NC_000008.10 | Chr8 | 365 | 365 | Submitted | NC_000008.10 |
| NC_000009.11 | Chr9 | 353 | 353 | Submitted | NC_000009.11 |
| NC_000010.10 | Chr10 | 388 | 388 | Submitted | NC_000010.10 |
| NC_000011.9 | Chr11 | 361 | 361 | Submitted | NC_000011.9 |
| NC_000012.11 | Chr12 | 333 | 333 | Submitted | NC_000012.11 |
| NC_000013.10 | Chr13 | 287 | 287 | Submitted | NC_000013.10 |
| NC_000014.8 | Chr14 | 205 | 205 | Submitted | NC_000014.8 |
| NC_000015.9 | Chr15 | 199 | 199 | Submitted | NC_000015.9 |
| NC_000016.9 | Chr16 | 250 | 250 | Submitted | NC_000016.9 |
| NC_000017.10 | Chr17 | 218 | 218 | Submitted | NC_000017.10 |
| NC_000018.9 | Chr18 | 227 | 227 | Submitted | NC_000018.9 |
| NC_000019.9 | Chr19 | 205 | 205 | Submitted | NC_000019.9 |
| NC_000020.10 | Chr20 | 200 | 200 | Submitted | NC_000020.10 |
| NC_000021.8 | Chr21 | 161 | 161 | Submitted | NC_000021.8 |
| NC_000022.10 | Chr22 | 149 | 149 | Submitted | NC_000022.10 |
| NC_000023.10 | ChrX | 285 | 285 | Submitted | NC_000023.10 |
| NC_000024.9 | ChrY | 12 | 12 | Submitted | NC_000024.9 |
| NC_000001.10 | Chr1 | 1,006 | 1,006 | Remapped | NC_000001.10 |
| NC_000002.11 | Chr2 | 1,072 | 1,072 | Remapped | NC_000002.11 |
| NC_000003.11 | Chr3 | 697 | 697 | Remapped | NC_000003.11 |
| NC_000004.11 | Chr4 | 841 | 841 | Remapped | NC_000004.11 |
| NC_000005.9 | Chr5 | 751 | 751 | Remapped | NC_000005.9 |
| NC_000006.11 | Chr6 | 831 | 831 | Remapped | NC_000006.11 |
| NC_000007.13 | Chr7 | 949 | 949 | Remapped | NC_000007.13 |
| NC_000008.10 | Chr8 | 614 | 614 | Remapped | NC_000008.10 |
| NC_000009.11 | Chr9 | 757 | 757 | Remapped | NC_000009.11 |
| NC_000010.10 | Chr10 | 718 | 718 | Remapped | NC_000010.10 |
| NC_000011.9 | Chr11 | 598 | 598 | Remapped | NC_000011.9 |
| NC_000012.11 | Chr12 | 636 | 636 | Remapped | NC_000012.11 |
| NC_000013.10 | Chr13 | 574 | 574 | Remapped | NC_000013.10 |
| NC_000014.8 | Chr14 | 333 | 333 | Remapped | NC_000014.8 |
| NC_000015.9 | Chr15 | 368 | 368 | Remapped | NC_000015.9 |
| NC_000016.9 | Chr16 | 505 | 505 | Remapped | NC_000016.9 |
| NC_000017.10 | Chr17 | 446 | 446 | Remapped | NC_000017.10 |
| NC_000018.9 | Chr18 | 441 | 441 | Remapped | NC_000018.9 |
| NC_000019.9 | Chr19 | 439 | 439 | Remapped | NC_000019.9 |
| NC_000020.10 | Chr20 | 380 | 380 | Remapped | NC_000020.10 |
| NC_000021.8 | Chr21 | 320 | 320 | Remapped | NC_000021.8 |
| NC_000022.10 | Chr22 | 281 | 281 | Remapped | NC_000022.10 |
| NC_000023.10 | ChrX | 582 | 582 | Remapped | NC_000023.10 |
| NC_000024.9 | ChrY | 52 | 52 | Remapped | NC_000024.9 |
| NT_113923.1 | Unplaced|NT_113923.1 | 2 | 2 | Remapped | NT_113923.1 |
| NT_167214.1 | Unplaced|NT_167214.1 | 25 | 25 | Remapped | NT_167214.1 |
| NT_167213.1 | Unplaced|NT_167213.1 | 1 | 1 | Remapped | NT_167213.1 |
| NT_167225.1 | Unplaced|NT_167225.1 | 2 | 2 | Remapped | NT_167225.1 |
| NT_167226.1 | Unplaced|NT_167226.1 | 2 | 2 | Remapped | NT_167226.1 |
| NT_167230.1 | Unplaced|NT_167230.1 | 3 | 3 | Remapped | NT_167230.1 |
| NT_167211.1 | Unplaced|NT_167211.1 | 4 | 4 | Remapped | NT_167211.1 |
| NT_167223.1 | Unplaced|NT_167223.1 | 1 | 1 | Remapped | NT_167223.1 |
| NT_167224.1 | Unplaced|NT_167224.1 | 1 | 1 | Remapped | NT_167224.1 |
| NT_167228.1 | Unplaced|NT_167228.1 | 2 | 2 | Remapped | NT_167228.1 |
| NT_167231.1 | Unplaced|NT_167231.1 | 2 | 2 | Remapped | NT_167231.1 |
| NT_167233.1 | Unplaced|NT_167233.1 | 2 | 2 | Remapped | NT_167233.1 |
| NT_167237.1 | Unplaced|NT_167237.1 | 1 | 1 | Remapped | NT_167237.1 |
| NT_167207.1 | Chr1|NT_167207.1 | 3 | 3 | Remapped | NT_167207.1 |
| NW_003315903.1 | Chr1|NW_003315903.1 | 1 | 1 | Remapped | NW_003315903.1 |
| NW_003315904.1 | Chr1|NW_003315904.1 | 2 | 2 | Remapped | NW_003315904.1 |
| NW_003571030.1 | Chr1|NW_003571030.1 | 4 | 4 | Remapped | NW_003571030.1 |
| NW_003871055.3 | Chr1|NW_003871055.3 | 64 | 64 | Remapped | NW_003871055.3 |
| NW_003871056.3 | Chr1|NW_003871056.3 | 15 | 15 | Remapped | NW_003871056.3 |
| NW_003871057.1 | Chr1|NW_003871057.1 | 3 | 3 | Remapped | NW_003871057.1 |
| NW_004070863.1 | Chr1|NW_004070863.1 | 1 | 1 | Remapped | NW_004070863.1 |
| NW_004070864.2 | Chr1|NW_004070864.2 | 1 | 1 | Remapped | NW_004070864.2 |
| NW_003571031.1 | Chr2|NW_003571031.1 | 2 | 2 | Remapped | NW_003571031.1 |
| NW_004504299.1 | Chr2|NW_004504299.1 | 5 | 5 | Remapped | NW_004504299.1 |
| NW_003315912.1 | Chr3|NW_003315912.1 | 1 | 1 | Remapped | NW_003315912.1 |
| NW_003871058.1 | Chr3|NW_003871058.1 | 2 | 2 | Remapped | NW_003871058.1 |
| NW_004775426.1 | Chr3|NW_004775426.1 | 2 | 2 | Remapped | NW_004775426.1 |
| NT_113885.1 | Chr4|NT_113885.1 | 7 | 7 | Remapped | NT_113885.1 |
| NW_003571034.1 | Chr4|NW_003571034.1 | 6 | 6 | Remapped | NW_003571034.1 |
| NW_003571035.1 | Chr4|NW_003571035.1 | 1 | 1 | Remapped | NW_003571035.1 |
| NW_004775427.1 | Chr4|NW_004775427.1 | 3 | 3 | Remapped | NW_004775427.1 |
| NW_003871062.1 | Chr6|NW_003871062.1 | 2 | 2 | Remapped | NW_003871062.1 |
| NW_004070866.1 | Chr6|NW_004070866.1 | 1 | 1 | Remapped | NW_004070866.1 |
| NW_004504300.1 | Chr6|NW_004504300.1 | 2 | 2 | Remapped | NW_004504300.1 |
| NW_004775429.1 | Chr6|NW_004775429.1 | 3 | 3 | Remapped | NW_004775429.1 |
| NT_113901.1 | Chr7|NT_113901.1 | 10 | 10 | Remapped | NT_113901.1 |
| NW_003571037.1 | Chr7|NW_003571037.1 | 5 | 5 | Remapped | NW_003571037.1 |
| NW_003571038.1 | Chr7|NW_003571038.1 | 7 | 7 | Remapped | NW_003571038.1 |
| NW_003571039.1 | Chr7|NW_003571039.1 | 4 | 4 | Remapped | NW_003571039.1 |
| NW_003871064.1 | Chr7|NW_003871064.1 | 41 | 41 | Remapped | NW_003871064.1 |
| NW_003871065.1 | Chr7|NW_003871065.1 | 1 | 1 | Remapped | NW_003871065.1 |
| NW_004775430.1 | Chr7|NW_004775430.1 | 4 | 4 | Remapped | NW_004775430.1 |
| NW_003315923.1 | Chr8|NW_003315923.1 | 12 | 12 | Remapped | NW_003315923.1 |
| NW_003315924.1 | Chr8|NW_003315924.1 | 12 | 12 | Remapped | NW_003315924.1 |
| NW_003571042.1 | Chr8|NW_003571042.1 | 4 | 4 | Remapped | NW_003571042.1 |
| NW_003871066.2 | Chr8|NW_003871066.2 | 1 | 1 | Remapped | NW_003871066.2 |
| NT_113914.1 | Chr9|NT_113914.1 | 2 | 2 | Remapped | NT_113914.1 |
| NT_113916.2 | Chr9|NT_113916.2 | 18 | 18 | Remapped | NT_113916.2 |
| NW_003315925.1 | Chr9|NW_003315925.1 | 7 | 7 | Remapped | NW_003315925.1 |
| NW_003315926.1 | Chr9|NW_003315926.1 | 1 | 1 | Remapped | NW_003315926.1 |
| NW_003315927.1 | Chr9|NW_003315927.1 | 1 | 1 | Remapped | NW_003315927.1 |
| NW_003871067.1 | Chr9|NW_003871067.1 | 9 | 9 | Remapped | NW_003871067.1 |
| NW_004070868.1 | Chr9|NW_004070868.1 | 4 | 4 | Remapped | NW_004070868.1 |
| NW_004070869.1 | Chr9|NW_004070869.1 | 2 | 2 | Remapped | NW_004070869.1 |
| NW_004504301.1 | Chr9|NW_004504301.1 | 3 | 3 | Remapped | NW_004504301.1 |
| NW_003315933.1 | Chr10|NW_003315933.1 | 3 | 3 | Remapped | NW_003315933.1 |
| NW_003571043.1 | Chr10|NW_003571043.1 | 1 | 1 | Remapped | NW_003571043.1 |
| NW_003871068.1 | Chr10|NW_003871068.1 | 26 | 26 | Remapped | NW_003871068.1 |
| NW_003871071.1 | Chr10|NW_003871071.1 | 3 | 3 | Remapped | NW_003871071.1 |
| NW_004504302.1 | Chr10|NW_004504302.1 | 3 | 3 | Remapped | NW_004504302.1 |
| NW_003571045.1 | Chr11|NW_003571045.1 | 2 | 2 | Remapped | NW_003571045.1 |
| NW_003571046.1 | Chr11|NW_003571046.1 | 2 | 2 | Remapped | NW_003571046.1 |
| NW_003871072.2 | Chr11|NW_003871072.2 | 4 | 4 | Remapped | NW_003871072.2 |
| NW_003871075.1 | Chr11|NW_003871075.1 | 2 | 2 | Remapped | NW_003871075.1 |
| NW_003871077.1 | Chr11|NW_003871077.1 | 2 | 2 | Remapped | NW_003871077.1 |
| NW_003871079.1 | Chr11|NW_003871079.1 | 1 | 1 | Remapped | NW_003871079.1 |
| NW_003871081.1 | Chr11|NW_003871081.1 | 2 | 2 | Remapped | NW_003871081.1 |
| NW_004070871.1 | Chr11|NW_004070871.1 | 5 | 5 | Remapped | NW_004070871.1 |
| NW_003315937.1 | Chr12|NW_003315937.1 | 19 | 19 | Remapped | NW_003315937.1 |
| NW_003571048.1 | Chr12|NW_003571048.1 | 3 | 3 | Remapped | NW_003571048.1 |
| NW_003871083.2 | Chr12|NW_003871083.2 | 2 | 2 | Remapped | NW_003871083.2 |
| NW_004166863.1 | Chr14|NW_004166863.1 | 21 | 21 | Remapped | NW_004166863.1 |
| NW_003871084.1 | Chr15|NW_003871084.1 | 2 | 2 | Remapped | NW_003871084.1 |
| NW_003315948.2 | Chr17|NW_003315948.2 | 1 | 1 | Remapped | NW_003315948.2 |
| NW_003315950.2 | Chr17|NW_003315950.2 | 8 | 8 | Remapped | NW_003315950.2 |
| NW_003571052.1 | Chr17|NW_003571052.1 | 1 | 1 | Remapped | NW_003571052.1 |
| NW_003871087.1 | Chr17|NW_003871087.1 | 8 | 8 | Remapped | NW_003871087.1 |
| NW_003871088.1 | Chr17|NW_003871088.1 | 3 | 3 | Remapped | NW_003871088.1 |
| NW_003871089.1 | Chr17|NW_003871089.1 | 10 | 10 | Remapped | NW_003871089.1 |
| NW_003871090.1 | Chr17|NW_003871090.1 | 1 | 1 | Remapped | NW_003871090.1 |
| NW_004070872.2 | Chr17|NW_004070872.2 | 15 | 15 | Remapped | NW_004070872.2 |
| NW_004775433.1 | Chr17|NW_004775433.1 | 9 | 9 | Remapped | NW_004775433.1 |
| NW_003571053.2 | Chr19|NW_003571053.2 | 2 | 2 | Remapped | NW_003571053.2 |
| NW_003871094.1 | Chr19|NW_003871094.1 | 5 | 5 | Remapped | NW_003871094.1 |
| NW_004166865.1 | Chr19|NW_004166865.1 | 5 | 5 | Remapped | NW_004166865.1 |
| NW_004775434.1 | Chr19|NW_004775434.1 | 1 | 1 | Remapped | NW_004775434.1 |
| NW_003571063.2 | Chr20|NW_003571063.2 | 3 | 3 | Remapped | NW_003571063.2 |
| NW_003871095.1 | Chr20|NW_003871095.1 | 1 | 1 | Remapped | NW_003871095.1 |
| NW_004504304.1 | Chr20|NW_004504304.1 | 5 | 5 | Remapped | NW_004504304.1 |
| NW_004775435.1 | Chr21|NW_004775435.1 | 3 | 3 | Remapped | NW_004775435.1 |
| NT_113961.1 | Chr22|NT_113961.1 | 1 | 1 | Remapped | NT_113961.1 |
| NW_004070873.1 | Chr22|NW_004070873.1 | 1 | 1 | Remapped | NW_004070873.1 |
| NW_004070874.1 | Chr22|NW_004070874.1 | 2 | 2 | Remapped | NW_004070874.1 |
| NW_004070875.1 | Chr22|NW_004070875.1 | 8 | 8 | Remapped | NW_004070875.1 |
| NT_167212.1 | Chr22|NT_167212.1 | 2 | 2 | Remapped | NT_167212.1 |
| NT_167235.1 | Chr22|NT_167235.1 | 3 | 3 | Remapped | NT_167235.1 |
| NT_167238.1 | Chr22|NT_167238.1 | 1 | 1 | Remapped | NT_167238.1 |
| NW_003571064.2 | ChrX|NW_003571064.2 | 33 | 33 | Remapped | NW_003571064.2 |
| NW_003871099.1 | ChrX|NW_003871099.1 | 2 | 2 | Remapped | NW_003871099.1 |
| NW_003871100.1 | ChrX|NW_003871100.1 | 2 | 2 | Remapped | NW_003871100.1 |
| NW_003871101.3 | ChrX|NW_003871101.3 | 1 | 1 | Remapped | NW_003871101.3 |
| NW_003871103.3 | ChrX|NW_003871103.3 | 14 | 14 | Remapped | NW_003871103.3 |
| NW_004070877.1 | ChrX|NW_004070877.1 | 7 | 7 | Remapped | NW_004070877.1 |
| NW_004070878.1 | ChrX|NW_004070878.1 | 2 | 2 | Remapped | NW_004070878.1 |
| NW_004070879.1 | ChrX|NW_004070879.1 | 2 | 2 | Remapped | NW_004070879.1 |
| NW_004070880.2 | ChrX|NW_004070880.2 | 5 | 5 | Remapped | NW_004070880.2 |
| NW_004070883.1 | ChrX|NW_004070883.1 | 2 | 2 | Remapped | NW_004070883.1 |
| NW_004070884.1 | ChrX|NW_004070884.1 | 1 | 1 | Remapped | NW_004070884.1 |
| NW_004070885.1 | ChrX|NW_004070885.1 | 1 | 1 | Remapped | NW_004070885.1 |
| NW_004070886.1 | ChrX|NW_004070886.1 | 3 | 3 | Remapped | NW_004070886.1 |
| NW_004070887.1 | ChrX|NW_004070887.1 | 8 | 8 | Remapped | NW_004070887.1 |
| NW_004070888.1 | ChrX|NW_004070888.1 | 10 | 10 | Remapped | NW_004070888.1 |
| NW_004070889.1 | ChrX|NW_004070889.1 | 6 | 6 | Remapped | NW_004070889.1 |
| NW_004070890.2 | ChrX|NW_004070890.2 | 36 | 36 | Remapped | NW_004070890.2 |
| NW_004070891.1 | ChrX|NW_004070891.1 | 13 | 13 | Remapped | NW_004070891.1 |
| NW_004070892.1 | ChrX|NW_004070892.1 | 1 | 1 | Remapped | NW_004070892.1 |
| NW_004166866.1 | ChrX|NW_004166866.1 | 2 | 2 | Remapped | NW_004166866.1 |
| CM000673.1 | Chr11 | 1 | 1 | Remapped | CM000673.1 |
| CM000678.1 | Chr16 | 3 | 3 | Remapped | CM000678.1 |
| CM000684.1 | Chr22 | 1 | 1 | Remapped | CM000684.1 |
| GL582966.2 | Chr2|GL582966.2 | 1 | 1 | Remapped | GL582966.2 |
| GL383541.1 | Chr9|GL383541.1 | 1 | 1 | Remapped | GL383541.1 |
| JH159148.1 | Chr17|JH159148.1 | 1 | 1 | Remapped | JH159148.1 |
| GL383570.1 | Chr18|GL383570.1 | 1 | 1 | Remapped | GL383570.1 |
| Variant Region remap status | Variant Call remap status | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
| NC_000001.10 | Chr1 | 540 | 520 | 1 | 2 | 2 | 15 | 540 | 520 | 1 | 2 | 2 | 15 |
| NC_000002.11 | Chr2 | 576 | 546 | 3 | 2 | 1 | 24 | 576 | 546 | 3 | 2 | 1 | 24 |
| NC_000003.11 | Chr3 | 409 | 395 | 0 | 0 | 1 | 13 | 409 | 395 | 0 | 0 | 1 | 13 |
| NC_000004.11 | Chr4 | 479 | 453 | 0 | 0 | 0 | 26 | 479 | 453 | 0 | 0 | 0 | 26 |
| NC_000005.9 | Chr5 | 404 | 389 | 0 | 0 | 0 | 15 | 404 | 389 | 0 | 0 | 0 | 15 |
| NC_000006.11 | Chr6 | 451 | 433 | 0 | 0 | 0 | 18 | 451 | 433 | 0 | 0 | 0 | 18 |
| NC_000007.13 | Chr7 | 494 | 467 | 3 | 0 | 4 | 20 | 494 | 467 | 3 | 0 | 4 | 20 |
| NC_000008.10 | Chr8 | 365 | 326 | 0 | 0 | 0 | 39 | 365 | 326 | 0 | 0 | 0 | 39 |
| NC_000009.11 | Chr9 | 353 | 343 | 2 | 0 | 1 | 7 | 353 | 343 | 2 | 0 | 1 | 7 |
| NC_000010.10 | Chr10 | 388 | 383 | 0 | 0 | 1 | 4 | 388 | 383 | 0 | 0 | 1 | 4 |
| NC_000011.9 | Chr11 | 361 | 334 | 0 | 0 | 1 | 26 | 361 | 334 | 0 | 0 | 1 | 26 |
| NC_000012.11 | Chr12 | 333 | 308 | 0 | 0 | 1 | 24 | 333 | 308 | 0 | 0 | 1 | 24 |
| NC_000013.10 | Chr13 | 287 | 272 | 0 | 0 | 0 | 15 | 287 | 272 | 0 | 0 | 0 | 15 |
| NC_000014.8 | Chr14 | 205 | 175 | 0 | 1 | 6 | 23 | 205 | 175 | 0 | 1 | 6 | 23 |
| NC_000015.9 | Chr15 | 199 | 188 | 0 | 0 | 0 | 11 | 199 | 188 | 0 | 0 | 0 | 11 |
| NC_000016.9 | Chr16 | 250 | 230 | 6 | 1 | 2 | 11 | 250 | 230 | 6 | 1 | 2 | 11 |
| NC_000017.10 | Chr17 | 218 | 193 | 0 | 0 | 1 | 24 | 218 | 193 | 0 | 0 | 1 | 24 |
| NC_000018.9 | Chr18 | 227 | 214 | 0 | 0 | 0 | 13 | 227 | 214 | 0 | 0 | 0 | 13 |
| NC_000019.9 | Chr19 | 205 | 193 | 1 | 0 | 1 | 10 | 205 | 193 | 1 | 0 | 1 | 10 |
| NC_000020.10 | Chr20 | 200 | 191 | 0 | 0 | 0 | 9 | 200 | 191 | 0 | 0 | 0 | 9 |
| NC_000021.8 | Chr21 | 161 | 150 | 0 | 1 | 1 | 9 | 161 | 150 | 0 | 1 | 1 | 9 |
| NC_000022.10 | Chr22 | 149 | 139 | 0 | 0 | 3 | 7 | 149 | 139 | 0 | 0 | 3 | 7 |
| NC_000023.10 | ChrX | 285 | 258 | 2 | 1 | 8 | 16 | 285 | 258 | 2 | 1 | 8 | 16 |
| NC_000024.9 | ChrY | 12 | 9 | 0 | 0 | 0 | 3 | 12 | 9 | 0 | 0 | 0 | 3 |
| Variant Region remap status | Variant Call remap status | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
| GL383541.1 | Chr9|GL383541.1 | 1 | 1 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 |
| GL383563.3 | Chr17|GL383563.3 | 1 | 0 | 0 | 0 | 1 | 0 | 1 | 0 | 0 | 0 | 1 | 0 |
| GL383570.1 | Chr18|GL383570.1 | 1 | 1 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 |
| GL582966.2 | Chr2|GL582966.2 | 1 | 1 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 |
| JH159148.1 | Chr17|JH159148.1 | 1 | 1 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 |
| KI270731.1 | Chr22|KI270731.1 | 1 | 1 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 |
| KI270826.1 | Chr11|KI270826.1 | 1 | 1 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 |
| KI270853.1 | Chr16|KI270853.1 | 1 | 1 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 |
| KI270854.1 | Chr16|KI270854.1 | 2 | 2 | 0 | 0 | 0 | 0 | 2 | 2 | 0 | 0 | 0 | 0 |
| KI270905.1 | Chr15|KI270905.1 | 1 | 0 | 0 | 0 | 1 | 0 | 1 | 0 | 0 | 0 | 1 | 0 |
| KI270926.1 | Chr8|KI270926.1 | 1 | 0 | 0 | 0 | 1 | 0 | 1 | 0 | 0 | 0 | 1 | 0 |
| NC_000001.11 | Chr1 | 1,083 | 1,009 | 3 | 2 | 28 | 41 | 1,083 | 1,009 | 3 | 2 | 28 | 41 |
| NC_000002.12 | Chr2 | 1,102 | 1,055 | 1 | 4 | 35 | 7 | 1,102 | 1,055 | 1 | 4 | 35 | 7 |
| NC_000003.12 | Chr3 | 727 | 693 | 1 | 0 | 29 | 4 | 727 | 693 | 1 | 0 | 29 | 4 |
| NC_000004.12 | Chr4 | 846 | 835 | 0 | 0 | 5 | 6 | 846 | 835 | 0 | 0 | 5 | 6 |
| NC_000005.10 | Chr5 | 781 | 751 | 0 | 0 | 30 | 0 | 781 | 751 | 0 | 0 | 30 | 0 |
| NC_000006.12 | Chr6 | 856 | 817 | 7 | 1 | 25 | 6 | 856 | 817 | 7 | 1 | 25 | 6 |
| NC_000007.14 | Chr7 | 971 | 913 | 2 | 1 | 6 | 49 | 971 | 913 | 2 | 1 | 6 | 49 |
| NC_000008.11 | Chr8 | 645 | 618 | 1 | 0 | 14 | 12 | 645 | 618 | 1 | 0 | 14 | 12 |
| NC_000009.12 | Chr9 | 786 | 749 | 3 | 2 | 10 | 22 | 786 | 749 | 3 | 2 | 10 | 22 |
| NC_000010.11 | Chr10 | 790 | 705 | 4 | 3 | 52 | 26 | 790 | 705 | 4 | 3 | 52 | 26 |
| NC_000011.10 | Chr11 | 611 | 582 | 0 | 0 | 11 | 18 | 611 | 582 | 0 | 0 | 11 | 18 |
| NC_000012.12 | Chr12 | 680 | 634 | 0 | 0 | 33 | 13 | 680 | 634 | 0 | 0 | 33 | 13 |
| NC_000013.11 | Chr13 | 589 | 574 | 0 | 2 | 13 | 0 | 589 | 574 | 0 | 2 | 13 | 0 |
| NC_000014.9 | Chr14 | 349 | 328 | 2 | 3 | 5 | 11 | 349 | 328 | 2 | 3 | 5 | 11 |
| NC_000015.10 | Chr15 | 395 | 363 | 1 | 2 | 27 | 2 | 395 | 363 | 1 | 2 | 27 | 2 |
| NC_000016.10 | Chr16 | 506 | 493 | 0 | 1 | 12 | 0 | 506 | 493 | 0 | 1 | 12 | 0 |
| NC_000017.11 | Chr17 | 494 | 465 | 4 | 0 | 9 | 16 | 494 | 465 | 4 | 0 | 9 | 16 |
| NC_000018.10 | Chr18 | 480 | 440 | 1 | 0 | 39 | 0 | 480 | 440 | 1 | 0 | 39 | 0 |
| NC_000019.10 | Chr19 | 449 | 439 | 1 | 0 | 3 | 6 | 449 | 439 | 1 | 0 | 3 | 6 |
| NC_000020.11 | Chr20 | 479 | 390 | 2 | 2 | 79 | 6 | 479 | 390 | 2 | 2 | 79 | 6 |
| NC_000021.9 | Chr21 | 428 | 361 | 1 | 2 | 61 | 3 | 428 | 361 | 1 | 2 | 61 | 3 |
| NC_000022.11 | Chr22 | 354 | 300 | 8 | 8 | 37 | 1 | 354 | 300 | 8 | 8 | 37 | 1 |
| NC_000023.11 | ChrX | 629 | 495 | 0 | 0 | 15 | 119 | 629 | 495 | 0 | 0 | 15 | 119 |
| NC_000024.10 | ChrY | 51 | 50 | 1 | 0 | 0 | 0 | 51 | 50 | 1 | 0 | 0 | 0 |
Samplesets
Number of Samplesets: 1
- Size:
- 2
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- None reported
| Sample ID | Subject ID | Sex | Ethnicity | Subject Phenotype |
|---|---|---|---|---|
| CHM1 | CHM1 | Not reported | ||
| NA12878 | GM12878 | Female | CEU | Not reported |
Experimental Details
| Experiment ID | Type | Method | Analysis | Number of Variant Calls |
|---|---|---|---|---|
| 1 | Discovery | Sequencing | Local sequence assembly | 7,551 |
| 2 | Discovery | Sequencing | Local sequence assembly | 15,093 |