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nstd129 (Guo et al. 2016)

Organism:
Human
Study Type:
Control Set
Submitter:
Dongchuan Guo
Description:
We used the Illumina HumanExome array to genotype 753 patients of European descent presenting specifically sporadic thoracic aortic dissection (STAD) and compared them to the genotypes of 2259 controls. SNPs in FBN1, LRP1, and ULK4 were identified to be significantly associated with STAD, and these results were replicated in two independent cohorts. Case-control association study of genomic copy number variation (CNV) on these loci were further performed to test the allele frequency of CNV in patients with that of controls from the dbGaP database. CNV analysis independently confirmed that ULK4 deletions were significantly associated with development of thoracic aortic disease. These results indicate that genetic variations in LRP1 and ULK4 contribute to risk for presenting with an acute aortic dissection. The variant reported here was observed in a control individual. See Variant Summary counts for nstd129 in dbVar Variant Summary.
Publication(s):
Guo et al. 2016
dbGaP:
Subjects in this study are not consented to be included in a public DNA archive. To gain access to subject level data, see dbGaP.
dbGaP Release Date:
2012-07-28

Detailed Information: Download 1 Variant Region, Download 1 Variant Call, Download Both, FTP

Variant Summary

Assembly used for analysis:
Remapped: GRCh38.p12 (hg38)
Submitted: GRCh37 (hg19)

Sequence IDChrNumber of Variant RegionsNumber of Variant CallsPlacement typeLink to graphical display
NC_000003.12Chr311RemappedNC_000003.12
Sequence IDChrNumber of Variant RegionsNumber of Variant CallsPlacement typeLink to graphical display
NC_000003.11Chr311SubmittedNC_000003.11

Variant Region remap statusVariant Call remap status
Sequence IDChrVariant Regions on sourcePerfectGoodPassFailMultVariant Calls on sourcePerfectGoodPassFailMult
NC_000003.11Chr3101000101000

Samplesets

Number of Samplesets: 1

Name:
Control
Sampleset Type:
Control
Description:
Control sample
Size:
1
Organisms:
Homo sapiens
Sampleset Phenotype(s):
None reported
  • Download Samples as CSV file
  • Samples for sampleset 1
    Sample IDSubject ID EthnicitySubject Phenotype
    11European descentNot reported

    Experimental Details

    Experiment IDTypeMethodAnalysisPlatformsDataNumber of Variant Calls
    1DiscoverySNP arraySNP genotyping analysisGenomic copy number analysisdbGaP1

    Validations

    No validation data were submitted for this study.

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