nstd106 (Alsmadi et al. 2014)
- Organism:
- Human
- Study Type:
- Control Set
- Submitter:
- Prashantha Hebbar
- Description:
- Comprehensive analysis of two personal genomes of Saudi arabian ancestry from Kuwait. See Variant Summary counts for nstd106 in dbVar Variant Summary.
- Project:
- PRJNA245931
- Publication(s):
- Alsmadi et al. 2014
Detailed Information: Download 39678 Variant Regions, Download 44188 Variant Calls, Download Both, FTP
Variant Summary
Assembly used for analysis:
Remapped: GRCh38.p12 (hg38)
Submitted: GRCh37 (hg19)
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.11 | Chr1 | 2,966 | 3,292 | Remapped | NC_000001.11 |
| NC_000002.12 | Chr2 | 3,021 | 3,363 | Remapped | NC_000002.12 |
| NC_000003.12 | Chr3 | 2,027 | 2,281 | Remapped | NC_000003.12 |
| NC_000004.12 | Chr4 | 2,619 | 2,972 | Remapped | NC_000004.12 |
| NC_000005.10 | Chr5 | 2,116 | 2,359 | Remapped | NC_000005.10 |
| NC_000006.12 | Chr6 | 1,996 | 2,270 | Remapped | NC_000006.12 |
| NC_000007.14 | Chr7 | 2,636 | 2,922 | Remapped | NC_000007.14 |
| NC_000008.11 | Chr8 | 1,802 | 2,015 | Remapped | NC_000008.11 |
| NC_000009.12 | Chr9 | 2,101 | 2,296 | Remapped | NC_000009.12 |
| NC_000010.11 | Chr10 | 2,064 | 2,275 | Remapped | NC_000010.11 |
| NC_000011.10 | Chr11 | 1,745 | 1,944 | Remapped | NC_000011.10 |
| NC_000012.12 | Chr12 | 1,665 | 1,841 | Remapped | NC_000012.12 |
| NC_000013.11 | Chr13 | 1,281 | 1,459 | Remapped | NC_000013.11 |
| NC_000014.9 | Chr14 | 1,144 | 1,267 | Remapped | NC_000014.9 |
| NC_000015.10 | Chr15 | 1,225 | 1,341 | Remapped | NC_000015.10 |
| NC_000016.10 | Chr16 | 1,529 | 1,659 | Remapped | NC_000016.10 |
| NC_000017.11 | Chr17 | 1,421 | 1,556 | Remapped | NC_000017.11 |
| NC_000018.10 | Chr18 | 1,041 | 1,147 | Remapped | NC_000018.10 |
| NC_000019.10 | Chr19 | 1,534 | 1,659 | Remapped | NC_000019.10 |
| NC_000020.11 | Chr20 | 1,114 | 1,225 | Remapped | NC_000020.11 |
| NC_000021.9 | Chr21 | 1,217 | 1,343 | Remapped | NC_000021.9 |
| NC_000022.11 | Chr22 | 812 | 875 | Remapped | NC_000022.11 |
| NC_000023.11 | ChrX | 1,176 | 1,265 | Remapped | NC_000023.11 |
| NC_000024.10 | ChrY | 537 | 573 | Remapped | NC_000024.10 |
| NT_187513.1 | Unplaced|NT_187513.1 | 5 | 5 | Remapped | NT_187513.1 |
| NT_187361.1 | Chr1|NT_187361.1 | 15 | 15 | Remapped | NT_187361.1 |
| NT_187515.1 | Chr1|NT_187515.1 | 21 | 22 | Remapped | NT_187515.1 |
| NT_187516.1 | Chr1|NT_187516.1 | 4 | 4 | Remapped | NT_187516.1 |
| NT_187517.1 | Chr1|NT_187517.1 | 3 | 3 | Remapped | NT_187517.1 |
| NT_187518.1 | Chr1|NT_187518.1 | 7 | 8 | Remapped | NT_187518.1 |
| NT_187519.1 | Chr1|NT_187519.1 | 12 | 13 | Remapped | NT_187519.1 |
| NT_187520.1 | Chr1|NT_187520.1 | 12 | 12 | Remapped | NT_187520.1 |
| NT_187521.1 | Chr1|NT_187521.1 | 1 | 1 | Remapped | NT_187521.1 |
| NT_187646.1 | Chr1|NT_187646.1 | 7 | 8 | Remapped | NT_187646.1 |
| NW_003315905.1 | Chr1|NW_003315905.1 | 3 | 3 | Remapped | NW_003315905.1 |
| NW_003315907.2 | Chr1|NW_003315907.2 | 2 | 2 | Remapped | NW_003315907.2 |
| NW_009646194.1 | Chr1|NW_009646194.1 | 3 | 3 | Remapped | NW_009646194.1 |
| NW_009646195.1 | Chr1|NW_009646195.1 | 2 | 2 | Remapped | NW_009646195.1 |
| NW_009646196.1 | Chr1|NW_009646196.1 | 1 | 1 | Remapped | NW_009646196.1 |
| NW_011332687.1 | Chr1|NW_011332687.1 | 5 | 5 | Remapped | NW_011332687.1 |
| NW_011332688.1 | Chr1|NW_011332688.1 | 11 | 12 | Remapped | NW_011332688.1 |
| NW_012132914.1 | Chr1|NW_012132914.1 | 14 | 14 | Remapped | NW_012132914.1 |
| NW_014040926.1 | Chr1|NW_014040926.1 | 5 | 5 | Remapped | NW_014040926.1 |
| NW_014040927.1 | Chr1|NW_014040927.1 | 1 | 1 | Remapped | NW_014040927.1 |
| NW_015495298.1 | Chr1|NW_015495298.1 | 4 | 4 | Remapped | NW_015495298.1 |
| NW_017852928.1 | Chr1|NW_017852928.1 | 10 | 10 | Remapped | NW_017852928.1 |
| NW_018654707.1 | Chr1|NW_018654707.1 | 2 | 2 | Remapped | NW_018654707.1 |
| NW_018654708.1 | Chr1|NW_018654708.1 | 3 | 3 | Remapped | NW_018654708.1 |
| NW_019805487.1 | Chr1|NW_019805487.1 | 1 | 1 | Remapped | NW_019805487.1 |
| NT_187522.1 | Chr2|NT_187522.1 | 3 | 3 | Remapped | NT_187522.1 |
| NT_187523.1 | Chr2|NT_187523.1 | 3 | 4 | Remapped | NT_187523.1 |
| NT_187524.1 | Chr2|NT_187524.1 | 3 | 3 | Remapped | NT_187524.1 |
| NT_187525.1 | Chr2|NT_187525.1 | 4 | 4 | Remapped | NT_187525.1 |
| NT_187526.1 | Chr2|NT_187526.1 | 8 | 8 | Remapped | NT_187526.1 |
| NT_187527.1 | Chr2|NT_187527.1 | 16 | 17 | Remapped | NT_187527.1 |
| NT_187528.1 | Chr2|NT_187528.1 | 9 | 9 | Remapped | NT_187528.1 |
| NT_187529.1 | Chr2|NT_187529.1 | 20 | 21 | Remapped | NT_187529.1 |
| NT_187647.1 | Chr2|NT_187647.1 | 3 | 4 | Remapped | NT_187647.1 |
| NT_187648.1 | Chr2|NT_187648.1 | 8 | 9 | Remapped | NT_187648.1 |
| NW_003315908.1 | Chr2|NW_003315908.1 | 1 | 1 | Remapped | NW_003315908.1 |
| NW_003315909.1 | Chr2|NW_003315909.1 | 1 | 1 | Remapped | NW_003315909.1 |
| NW_011332689.1 | Chr2|NW_011332689.1 | 10 | 11 | Remapped | NW_011332689.1 |
| NW_011332690.1 | Chr2|NW_011332690.1 | 4 | 5 | Remapped | NW_011332690.1 |
| NW_012132915.1 | Chr2|NW_012132915.1 | 17 | 19 | Remapped | NW_012132915.1 |
| NW_015495299.1 | Chr2|NW_015495299.1 | 5 | 5 | Remapped | NW_015495299.1 |
| NW_018654710.1 | Chr2|NW_018654710.1 | 3 | 3 | Remapped | NW_018654710.1 |
| NT_187678.1 | Chr3|NT_187678.1 | 39 | 43 | Remapped | NT_187678.1 |
| NT_187688.1 | Chr3|NT_187688.1 | 41 | 45 | Remapped | NT_187688.1 |
| NT_187689.1 | Chr3|NT_187689.1 | 45 | 49 | Remapped | NT_187689.1 |
| NT_187690.1 | Chr3|NT_187690.1 | 41 | 45 | Remapped | NT_187690.1 |
| NT_187691.1 | Chr3|NT_187691.1 | 42 | 46 | Remapped | NT_187691.1 |
| NT_187532.1 | Chr3|NT_187532.1 | 33 | 37 | Remapped | NT_187532.1 |
| NT_187533.1 | Chr3|NT_187533.1 | 3 | 3 | Remapped | NT_187533.1 |
| NT_187534.1 | Chr3|NT_187534.1 | 1 | 1 | Remapped | NT_187534.1 |
| NT_187535.1 | Chr3|NT_187535.1 | 1 | 1 | Remapped | NT_187535.1 |
| NT_187537.1 | Chr3|NT_187537.1 | 4 | 5 | Remapped | NT_187537.1 |
| NT_187538.1 | Chr3|NT_187538.1 | 2 | 2 | Remapped | NT_187538.1 |
| NT_187539.1 | Chr3|NT_187539.1 | 16 | 16 | Remapped | NT_187539.1 |
| NT_187649.1 | Chr3|NT_187649.1 | 41 | 45 | Remapped | NT_187649.1 |
| NW_003315913.1 | Chr3|NW_003315913.1 | 1 | 1 | Remapped | NW_003315913.1 |
| NW_003871060.2 | Chr3|NW_003871060.2 | 5 | 5 | Remapped | NW_003871060.2 |
| NW_009646197.1 | Chr3|NW_009646197.1 | 6 | 6 | Remapped | NW_009646197.1 |
| NW_009646198.1 | Chr3|NW_009646198.1 | 2 | 2 | Remapped | NW_009646198.1 |
| NW_011332691.1 | Chr3|NW_011332691.1 | 8 | 9 | Remapped | NW_011332691.1 |
| NW_012132916.1 | Chr3|NW_012132916.1 | 6 | 7 | Remapped | NW_012132916.1 |
| NW_017363813.1 | Chr3|NW_017363813.1 | 4 | 5 | Remapped | NW_017363813.1 |
| NW_018654711.1 | Chr3|NW_018654711.1 | 3 | 3 | Remapped | NW_018654711.1 |
| NW_019805488.1 | Chr3|NW_019805488.1 | 4 | 4 | Remapped | NW_019805488.1 |
| NW_019805489.1 | Chr3|NW_019805489.1 | 2 | 3 | Remapped | NW_019805489.1 |
| NW_019805490.1 | Chr3|NW_019805490.1 | 2 | 2 | Remapped | NW_019805490.1 |
| NW_019805491.1 | Chr3|NW_019805491.1 | 1 | 1 | Remapped | NW_019805491.1 |
| NW_019805492.1 | Chr3|NW_019805492.1 | 2 | 2 | Remapped | NW_019805492.1 |
| NT_187679.1 | Chr4|NT_187679.1 | 34 | 39 | Remapped | NT_187679.1 |
| NT_113793.3 | Chr4|NT_113793.3 | 33 | 36 | Remapped | NT_113793.3 |
| NT_187540.1 | Chr4|NT_187540.1 | 6 | 9 | Remapped | NT_187540.1 |
| NT_187541.1 | Chr4|NT_187541.1 | 1 | 1 | Remapped | NT_187541.1 |
| NT_187542.1 | Chr4|NT_187542.1 | 3 | 5 | Remapped | NT_187542.1 |
| NT_187543.1 | Chr4|NT_187543.1 | 30 | 36 | Remapped | NT_187543.1 |
| NT_187544.1 | Chr4|NT_187544.1 | 3 | 4 | Remapped | NT_187544.1 |
| NT_187545.1 | Chr4|NT_187545.1 | 14 | 17 | Remapped | NT_187545.1 |
| NT_187650.1 | Chr4|NT_187650.1 | 33 | 39 | Remapped | NT_187650.1 |
| NW_003315914.1 | Chr4|NW_003315914.1 | 1 | 2 | Remapped | NW_003315914.1 |
| NW_003315915.1 | Chr4|NW_003315915.1 | 1 | 1 | Remapped | NW_003315915.1 |
| NW_013171799.1 | Chr4|NW_013171799.1 | 3 | 3 | Remapped | NW_013171799.1 |
| NW_013171801.1 | Chr4|NW_013171801.1 | 2 | 2 | Remapped | NW_013171801.1 |
| NW_017363814.1 | Chr4|NW_017363814.1 | 2 | 3 | Remapped | NW_017363814.1 |
| NT_187546.1 | Chr5|NT_187546.1 | 9 | 9 | Remapped | NT_187546.1 |
| NT_187547.1 | Chr5|NT_187547.1 | 11 | 12 | Remapped | NT_187547.1 |
| NT_187548.1 | Chr5|NT_187548.1 | 20 | 21 | Remapped | NT_187548.1 |
| NT_187549.1 | Chr5|NT_187549.1 | 2 | 3 | Remapped | NT_187549.1 |
| NT_187550.1 | Chr5|NT_187550.1 | 11 | 13 | Remapped | NT_187550.1 |
| NT_187651.1 | Chr5|NT_187651.1 | 30 | 30 | Remapped | NT_187651.1 |
| NT_187652.1 | Chr5|NT_187652.1 | 8 | 8 | Remapped | NT_187652.1 |
| NW_003315917.2 | Chr5|NW_003315917.2 | 30 | 30 | Remapped | NW_003315917.2 |
| NW_003315920.1 | Chr5|NW_003315920.1 | 1 | 1 | Remapped | NW_003315920.1 |
| NW_003571036.1 | Chr5|NW_003571036.1 | 1 | 1 | Remapped | NW_003571036.1 |
| NW_009646199.1 | Chr5|NW_009646199.1 | 4 | 4 | Remapped | NW_009646199.1 |
| NW_016107297.1 | Chr5|NW_016107297.1 | 16 | 18 | Remapped | NW_016107297.1 |
| NW_016107298.1 | Chr5|NW_016107298.1 | 21 | 22 | Remapped | NW_016107298.1 |
| NW_018654712.1 | Chr5|NW_018654712.1 | 1 | 1 | Remapped | NW_018654712.1 |
| NT_187552.1 | Chr6|NT_187552.1 | 10 | 10 | Remapped | NT_187552.1 |
| NT_187553.1 | Chr6|NT_187553.1 | 15 | 16 | Remapped | NT_187553.1 |
| NT_187555.1 | Chr6|NT_187555.1 | 2 | 2 | Remapped | NT_187555.1 |
| NT_187556.1 | Chr6|NT_187556.1 | 1 | 1 | Remapped | NT_187556.1 |
| NT_187557.1 | Chr6|NT_187557.1 | 4 | 6 | Remapped | NT_187557.1 |
| NW_003315921.1 | Chr6|NW_003315921.1 | 3 | 3 | Remapped | NW_003315921.1 |
| NW_004166862.2 | Chr6|NW_004166862.2 | 12 | 14 | Remapped | NW_004166862.2 |
| NW_009646200.1 | Chr6|NW_009646200.1 | 5 | 5 | Remapped | NW_009646200.1 |
| NW_012132918.1 | Chr6|NW_012132918.1 | 1 | 2 | Remapped | NW_012132918.1 |
| NW_013171802.1 | Chr6|NW_013171802.1 | 2 | 2 | Remapped | NW_013171802.1 |
| NW_017363815.1 | Chr6|NW_017363815.1 | 1 | 1 | Remapped | NW_017363815.1 |
| NW_018654713.1 | Chr6|NW_018654713.1 | 4 | 6 | Remapped | NW_018654713.1 |
| NT_187558.1 | Chr7|NT_187558.1 | 7 | 8 | Remapped | NT_187558.1 |
| NT_187559.1 | Chr7|NT_187559.1 | 2 | 3 | Remapped | NT_187559.1 |
| NT_187560.1 | Chr7|NT_187560.1 | 30 | 35 | Remapped | NT_187560.1 |
| NT_187561.1 | Chr7|NT_187561.1 | 3 | 3 | Remapped | NT_187561.1 |
| NT_187562.1 | Chr7|NT_187562.1 | 26 | 26 | Remapped | NT_187562.1 |
| NT_187563.1 | Chr7|NT_187563.1 | 6 | 6 | Remapped | NT_187563.1 |
| NT_187564.1 | Chr7|NT_187564.1 | 2 | 2 | Remapped | NT_187564.1 |
| NT_187653.1 | Chr7|NT_187653.1 | 9 | 10 | Remapped | NT_187653.1 |
| NW_012132919.1 | Chr7|NW_012132919.1 | 4 | 5 | Remapped | NW_012132919.1 |
| NW_017852929.1 | Chr7|NW_017852929.1 | 1 | 1 | Remapped | NW_017852929.1 |
| NW_017852930.1 | Chr7|NW_017852930.1 | 1 | 1 | Remapped | NW_017852930.1 |
| NW_018654714.1 | Chr7|NW_018654714.1 | 11 | 11 | Remapped | NW_018654714.1 |
| NW_018654715.1 | Chr7|NW_018654715.1 | 9 | 9 | Remapped | NW_018654715.1 |
| NW_019805493.1 | Chr7|NW_019805493.1 | 1 | 1 | Remapped | NW_019805493.1 |
| NT_187680.1 | Chr8|NT_187680.1 | 7 | 7 | Remapped | NT_187680.1 |
| NT_187565.1 | Chr8|NT_187565.1 | 16 | 17 | Remapped | NT_187565.1 |
| NT_187566.1 | Chr8|NT_187566.1 | 6 | 7 | Remapped | NT_187566.1 |
| NT_187567.1 | Chr8|NT_187567.1 | 8 | 10 | Remapped | NT_187567.1 |
| NT_187568.1 | Chr8|NT_187568.1 | 18 | 18 | Remapped | NT_187568.1 |
| NT_187569.1 | Chr8|NT_187569.1 | 6 | 7 | Remapped | NT_187569.1 |
| NT_187570.1 | Chr8|NT_187570.1 | 23 | 24 | Remapped | NT_187570.1 |
| NT_187571.1 | Chr8|NT_187571.1 | 12 | 13 | Remapped | NT_187571.1 |
| NT_187572.1 | Chr8|NT_187572.1 | 4 | 4 | Remapped | NT_187572.1 |
| NT_187573.1 | Chr8|NT_187573.1 | 4 | 5 | Remapped | NT_187573.1 |
| NT_187574.1 | Chr8|NT_187574.1 | 4 | 5 | Remapped | NT_187574.1 |
| NT_187576.1 | Chr8|NT_187576.1 | 76 | 80 | Remapped | NT_187576.1 |
| NT_187577.1 | Chr8|NT_187577.1 | 2 | 2 | Remapped | NT_187577.1 |
| NT_187654.1 | Chr8|NT_187654.1 | 12 | 12 | Remapped | NT_187654.1 |
| NT_187655.1 | Chr8|NT_187655.1 | 14 | 15 | Remapped | NT_187655.1 |
| NW_017852931.1 | Chr8|NW_017852931.1 | 3 | 3 | Remapped | NW_017852931.1 |
| NW_017852932.1 | Chr8|NW_017852932.1 | 1 | 1 | Remapped | NW_017852932.1 |
| NW_018654716.1 | Chr8|NW_018654716.1 | 9 | 9 | Remapped | NW_018654716.1 |
| NW_018654717.1 | Chr8|NW_018654717.1 | 143 | 151 | Remapped | NW_018654717.1 |
| NW_003315930.1 | Chr9|NW_003315930.1 | 2 | 2 | Remapped | NW_003315930.1 |
| NW_003315931.1 | Chr9|NW_003315931.1 | 2 | 2 | Remapped | NW_003315931.1 |
| NW_009646201.1 | Chr9|NW_009646201.1 | 9 | 10 | Remapped | NW_009646201.1 |
| NW_013171805.1 | Chr9|NW_013171805.1 | 1 | 1 | Remapped | NW_013171805.1 |
| NT_187579.1 | Chr10|NT_187579.1 | 55 | 59 | Remapped | NT_187579.1 |
| NT_187580.1 | Chr10|NT_187580.1 | 2 | 2 | Remapped | NT_187580.1 |
| NW_003315934.1 | Chr10|NW_003315934.1 | 2 | 3 | Remapped | NW_003315934.1 |
| NW_009646202.1 | Chr10|NW_009646202.1 | 2 | 2 | Remapped | NW_009646202.1 |
| NW_013171806.1 | Chr10|NW_013171806.1 | 4 | 4 | Remapped | NW_013171806.1 |
| NW_013171807.1 | Chr10|NW_013171807.1 | 3 | 4 | Remapped | NW_013171807.1 |
| NT_187681.1 | Chr11|NT_187681.1 | 19 | 20 | Remapped | NT_187681.1 |
| NT_187656.1 | Chr11|NT_187656.1 | 5 | 5 | Remapped | NT_187656.1 |
| NT_187657.1 | Chr11|NT_187657.1 | 11 | 12 | Remapped | NT_187657.1 |
| NT_187581.1 | Chr11|NT_187581.1 | 6 | 7 | Remapped | NT_187581.1 |
| NT_187582.1 | Chr11|NT_187582.1 | 6 | 7 | Remapped | NT_187582.1 |
| NT_187583.1 | Chr11|NT_187583.1 | 2 | 4 | Remapped | NT_187583.1 |
| NT_187584.1 | Chr11|NT_187584.1 | 11 | 11 | Remapped | NT_187584.1 |
| NT_187585.1 | Chr11|NT_187585.1 | 8 | 9 | Remapped | NT_187585.1 |
| NT_187586.1 | Chr11|NT_187586.1 | 9 | 9 | Remapped | NT_187586.1 |
| NW_003315936.1 | Chr11|NW_003315936.1 | 3 | 3 | Remapped | NW_003315936.1 |
| NW_003871074.1 | Chr11|NW_003871074.1 | 2 | 2 | Remapped | NW_003871074.1 |
| NW_009646203.1 | Chr11|NW_009646203.1 | 2 | 2 | Remapped | NW_009646203.1 |
| NW_011332695.1 | Chr11|NW_011332695.1 | 2 | 4 | Remapped | NW_011332695.1 |
| NW_015148966.1 | Chr11|NW_015148966.1 | 26 | 27 | Remapped | NW_015148966.1 |
| NW_019805495.1 | Chr11|NW_019805495.1 | 1 | 1 | Remapped | NW_019805495.1 |
| NW_019805496.1 | Chr11|NW_019805496.1 | 2 | 2 | Remapped | NW_019805496.1 |
| NW_019805497.1 | Chr11|NW_019805497.1 | 9 | 10 | Remapped | NW_019805497.1 |
| NW_019805498.1 | Chr11|NW_019805498.1 | 1 | 1 | Remapped | NW_019805498.1 |
| NT_187658.1 | Chr12|NT_187658.1 | 12 | 15 | Remapped | NT_187658.1 |
| NT_187587.1 | Chr12|NT_187587.1 | 6 | 6 | Remapped | NT_187587.1 |
| NT_187589.1 | Chr12|NT_187589.1 | 3 | 3 | Remapped | NT_187589.1 |
| NT_187590.1 | Chr12|NT_187590.1 | 3 | 3 | Remapped | NT_187590.1 |
| NW_003315939.2 | Chr12|NW_003315939.2 | 1 | 1 | Remapped | NW_003315939.2 |
| NW_003315940.1 | Chr12|NW_003315940.1 | 2 | 3 | Remapped | NW_003315940.1 |
| NW_003315942.2 | Chr12|NW_003315942.2 | 1 | 1 | Remapped | NW_003315942.2 |
| NW_003571049.1 | Chr12|NW_003571049.1 | 11 | 12 | Remapped | NW_003571049.1 |
| NW_003571050.1 | Chr12|NW_003571050.1 | 12 | 16 | Remapped | NW_003571050.1 |
| NW_011332696.1 | Chr12|NW_011332696.1 | 9 | 9 | Remapped | NW_011332696.1 |
| NW_011332697.1 | Chr12|NW_011332697.1 | 3 | 3 | Remapped | NW_011332697.1 |
| NW_013171809.1 | Chr12|NW_013171809.1 | 6 | 7 | Remapped | NW_013171809.1 |
| NW_015148967.1 | Chr12|NW_015148967.1 | 3 | 4 | Remapped | NW_015148967.1 |
| NW_018654718.1 | Chr12|NW_018654718.1 | 18 | 20 | Remapped | NW_018654718.1 |
| NW_018654719.1 | Chr12|NW_018654719.1 | 3 | 4 | Remapped | NW_018654719.1 |
| NW_018654720.1 | Chr12|NW_018654720.1 | 2 | 3 | Remapped | NW_018654720.1 |
| NW_019805499.1 | Chr12|NW_019805499.1 | 6 | 7 | Remapped | NW_019805499.1 |
| NT_187592.1 | Chr13|NT_187592.1 | 10 | 10 | Remapped | NT_187592.1 |
| NT_187593.1 | Chr13|NT_187593.1 | 2 | 2 | Remapped | NT_187593.1 |
| NT_187594.1 | Chr13|NT_187594.1 | 6 | 6 | Remapped | NT_187594.1 |
| NT_187595.1 | Chr13|NT_187595.1 | 2 | 2 | Remapped | NT_187595.1 |
| NT_187596.1 | Chr13|NT_187596.1 | 3 | 3 | Remapped | NT_187596.1 |
| NW_009646205.1 | Chr13|NW_009646205.1 | 3 | 4 | Remapped | NW_009646205.1 |
| NW_011332698.1 | Chr13|NW_011332698.1 | 20 | 23 | Remapped | NW_011332698.1 |
| NW_011332699.1 | Chr13|NW_011332699.1 | 74 | 80 | Remapped | NW_011332699.1 |
| NW_011332700.1 | Chr13|NW_011332700.1 | 4 | 4 | Remapped | NW_011332700.1 |
| NW_013171810.1 | Chr13|NW_013171810.1 | 1 | 1 | Remapped | NW_013171810.1 |
| NW_013171811.1 | Chr13|NW_013171811.1 | 3 | 4 | Remapped | NW_013171811.1 |
| NT_113796.3 | Chr14|NT_113796.3 | 10 | 10 | Remapped | NT_113796.3 |
| NT_187598.1 | Chr14|NT_187598.1 | 1 | 1 | Remapped | NT_187598.1 |
| NT_187599.1 | Chr14|NT_187599.1 | 3 | 3 | Remapped | NT_187599.1 |
| NT_187600.1 | Chr14|NT_187600.1 | 78 | 83 | Remapped | NT_187600.1 |
| NT_187601.1 | Chr14|NT_187601.1 | 22 | 24 | Remapped | NT_187601.1 |
| NW_018654721.1 | Chr14|NW_018654721.1 | 7 | 8 | Remapped | NW_018654721.1 |
| NW_018654722.1 | Chr14|NW_018654722.1 | 14 | 18 | Remapped | NW_018654722.1 |
| NT_187659.1 | Chr15|NT_187659.1 | 8 | 8 | Remapped | NT_187659.1 |
| NT_187660.1 | Chr15|NT_187660.1 | 41 | 44 | Remapped | NT_187660.1 |
| NT_187382.1 | Chr15|NT_187382.1 | 2 | 2 | Remapped | NT_187382.1 |
| NT_187602.1 | Chr15|NT_187602.1 | 4 | 4 | Remapped | NT_187602.1 |
| NT_187603.1 | Chr15|NT_187603.1 | 10 | 11 | Remapped | NT_187603.1 |
| NT_187604.1 | Chr15|NT_187604.1 | 11 | 11 | Remapped | NT_187604.1 |
| NT_187605.1 | Chr15|NT_187605.1 | 4 | 4 | Remapped | NT_187605.1 |
| NT_187606.1 | Chr15|NT_187606.1 | 14 | 14 | Remapped | NT_187606.1 |
| NW_003315943.1 | Chr15|NW_003315943.1 | 11 | 11 | Remapped | NW_003315943.1 |
| NW_003315944.2 | Chr15|NW_003315944.2 | 3 | 4 | Remapped | NW_003315944.2 |
| NW_011332701.1 | Chr15|NW_011332701.1 | 48 | 51 | Remapped | NW_011332701.1 |
| NT_187607.1 | Chr16|NT_187607.1 | 38 | 41 | Remapped | NT_187607.1 |
| NT_187608.1 | Chr16|NT_187608.1 | 1 | 1 | Remapped | NT_187608.1 |
| NT_187610.1 | Chr16|NT_187610.1 | 12 | 13 | Remapped | NT_187610.1 |
| NW_003315946.1 | Chr16|NW_003315946.1 | 1 | 1 | Remapped | NW_003315946.1 |
| NW_013171812.1 | Chr16|NW_013171812.1 | 1 | 1 | Remapped | NW_013171812.1 |
| NW_017852933.1 | Chr16|NW_017852933.1 | 16 | 17 | Remapped | NW_017852933.1 |
| NW_018654723.1 | Chr16|NW_018654723.1 | 2 | 2 | Remapped | NW_018654723.1 |
| NW_019805500.1 | Chr16|NW_019805500.1 | 5 | 6 | Remapped | NW_019805500.1 |
| NT_187661.1 | Chr17|NT_187661.1 | 9 | 9 | Remapped | NT_187661.1 |
| NT_187662.1 | Chr17|NT_187662.1 | 15 | 17 | Remapped | NT_187662.1 |
| NT_187663.1 | Chr17|NT_187663.1 | 23 | 23 | Remapped | NT_187663.1 |
| NT_187664.1 | Chr17|NT_187664.1 | 12 | 12 | Remapped | NT_187664.1 |
| NW_003871093.1 | Chr17|NW_003871093.1 | 2 | 2 | Remapped | NW_003871093.1 |
| NT_167251.2 | Chr17|NT_167251.2 | 2 | 2 | Remapped | NT_167251.2 |
| NT_187611.1 | Chr17|NT_187611.1 | 3 | 3 | Remapped | NT_187611.1 |
| NT_187612.1 | Chr17|NT_187612.1 | 12 | 13 | Remapped | NT_187612.1 |
| NT_187613.1 | Chr17|NT_187613.1 | 18 | 18 | Remapped | NT_187613.1 |
| NT_187614.1 | Chr17|NT_187614.1 | 57 | 61 | Remapped | NT_187614.1 |
| NT_187615.1 | Chr17|NT_187615.1 | 4 | 4 | Remapped | NT_187615.1 |
| NW_003315952.3 | Chr17|NW_003315952.3 | 27 | 28 | Remapped | NW_003315952.3 |
| NW_003315954.1 | Chr17|NW_003315954.1 | 2 | 3 | Remapped | NW_003315954.1 |
| NW_003315955.1 | Chr17|NW_003315955.1 | 4 | 4 | Remapped | NW_003315955.1 |
| NW_003871091.1 | Chr17|NW_003871091.1 | 10 | 10 | Remapped | NW_003871091.1 |
| NW_016107299.1 | Chr17|NW_016107299.1 | 3 | 3 | Remapped | NW_016107299.1 |
| NW_017363817.1 | Chr17|NW_017363817.1 | 15 | 17 | Remapped | NW_017363817.1 |
| NW_017363818.1 | Chr17|NW_017363818.1 | 3 | 3 | Remapped | NW_017363818.1 |
| NW_017363819.1 | Chr17|NW_017363819.1 | 12 | 12 | Remapped | NW_017363819.1 |
| NT_187665.1 | Chr18|NT_187665.1 | 9 | 10 | Remapped | NT_187665.1 |
| NT_187666.1 | Chr18|NT_187666.1 | 8 | 8 | Remapped | NT_187666.1 |
| NT_187617.1 | Chr18|NT_187617.1 | 10 | 10 | Remapped | NT_187617.1 |
| NT_187618.1 | Chr18|NT_187618.1 | 1 | 1 | Remapped | NT_187618.1 |
| NW_003315956.1 | Chr18|NW_003315956.1 | 3 | 3 | Remapped | NW_003315956.1 |
| NW_003315957.1 | Chr18|NW_003315957.1 | 1 | 1 | Remapped | NW_003315957.1 |
| NW_003315958.1 | Chr18|NW_003315958.1 | 7 | 8 | Remapped | NW_003315958.1 |
| NW_003315959.1 | Chr18|NW_003315959.1 | 1 | 1 | Remapped | NW_003315959.1 |
| NW_003315961.1 | Chr18|NW_003315961.1 | 8 | 8 | Remapped | NW_003315961.1 |
| NW_013171814.1 | Chr18|NW_013171814.1 | 4 | 5 | Remapped | NW_013171814.1 |
| NW_018654724.1 | Chr18|NW_018654724.1 | 1 | 1 | Remapped | NW_018654724.1 |
| NT_187693.1 | Chr19|NT_187693.1 | 43 | 44 | Remapped | NT_187693.1 |
| NW_003571061.2 | Chr19|NW_003571061.2 | 19 | 20 | Remapped | NW_003571061.2 |
| NW_003571057.2 | Chr19|NW_003571057.2 | 16 | 17 | Remapped | NW_003571057.2 |
| NW_003571058.2 | Chr19|NW_003571058.2 | 16 | 17 | Remapped | NW_003571058.2 |
| NW_003571059.2 | Chr19|NW_003571059.2 | 16 | 17 | Remapped | NW_003571059.2 |
| NW_003571060.1 | Chr19|NW_003571060.1 | 30 | 31 | Remapped | NW_003571060.1 |
| NW_003571056.2 | Chr19|NW_003571056.2 | 16 | 17 | Remapped | NW_003571056.2 |
| NW_003571055.2 | Chr19|NW_003571055.2 | 18 | 19 | Remapped | NW_003571055.2 |
| NT_187619.1 | Chr19|NT_187619.1 | 1 | 1 | Remapped | NT_187619.1 |
| NT_187620.1 | Chr19|NT_187620.1 | 1 | 1 | Remapped | NT_187620.1 |
| NT_187621.1 | Chr19|NT_187621.1 | 4 | 4 | Remapped | NT_187621.1 |
| NT_187622.1 | Chr19|NT_187622.1 | 12 | 12 | Remapped | NT_187622.1 |
| NW_003315962.1 | Chr19|NW_003315962.1 | 17 | 17 | Remapped | NW_003315962.1 |
| NW_003315963.1 | Chr19|NW_003315963.1 | 5 | 5 | Remapped | NW_003315963.1 |
| NW_003315964.2 | Chr19|NW_003315964.2 | 6 | 7 | Remapped | NW_003315964.2 |
| NW_003315965.1 | Chr19|NW_003315965.1 | 2 | 2 | Remapped | NW_003315965.1 |
| NW_003571054.1 | Chr19|NW_003571054.1 | 27 | 28 | Remapped | NW_003571054.1 |
| NW_009646206.1 | Chr19|NW_009646206.1 | 6 | 6 | Remapped | NW_009646206.1 |
| NW_014040929.1 | Chr19|NW_014040929.1 | 15 | 17 | Remapped | NW_014040929.1 |
| NT_187623.1 | Chr20|NT_187623.1 | 14 | 17 | Remapped | NT_187623.1 |
| NT_187624.1 | Chr20|NT_187624.1 | 21 | 22 | Remapped | NT_187624.1 |
| NT_187625.1 | Chr20|NT_187625.1 | 2 | 2 | Remapped | NT_187625.1 |
| NT_187626.1 | Chr21|NT_187626.1 | 3 | 3 | Remapped | NT_187626.1 |
| NT_187627.1 | Chr21|NT_187627.1 | 4 | 4 | Remapped | NT_187627.1 |
| NT_187628.1 | Chr21|NT_187628.1 | 8 | 9 | Remapped | NT_187628.1 |
| NW_003315967.2 | Chr21|NW_003315967.2 | 1 | 2 | Remapped | NW_003315967.2 |
| NW_003315968.2 | Chr21|NW_003315968.2 | 2 | 2 | Remapped | NW_003315968.2 |
| NW_003315969.2 | Chr21|NW_003315969.2 | 2 | 2 | Remapped | NW_003315969.2 |
| NW_003315970.2 | Chr21|NW_003315970.2 | 3 | 3 | Remapped | NW_003315970.2 |
| NT_187682.1 | Chr22|NT_187682.1 | 2 | 2 | Remapped | NT_187682.1 |
| NW_015148969.1 | Chr22|NW_015148969.1 | 7 | 7 | Remapped | NW_015148969.1 |
| NT_187629.1 | Chr22|NT_187629.1 | 7 | 9 | Remapped | NT_187629.1 |
| NT_187631.1 | Chr22|NT_187631.1 | 1 | 1 | Remapped | NT_187631.1 |
| NT_187632.1 | Chr22|NT_187632.1 | 13 | 15 | Remapped | NT_187632.1 |
| NT_187633.1 | Chr22|NT_187633.1 | 9 | 11 | Remapped | NT_187633.1 |
| NW_003315972.2 | Chr22|NW_003315972.2 | 7 | 9 | Remapped | NW_003315972.2 |
| NT_187667.1 | ChrX|NT_187667.1 | 11 | 11 | Remapped | NT_187667.1 |
| NW_017363820.1 | ChrX|NW_017363820.1 | 3 | 5 | Remapped | NW_017363820.1 |
| NT_187634.1 | ChrX|NT_187634.1 | 10 | 10 | Remapped | NT_187634.1 |
| NW_009646209.1 | ChrY|NW_009646209.1 | 62 | 67 | Remapped | NW_009646209.1 |
| NW_018654725.1 | ChrY|NW_018654725.1 | 1 | 2 | Remapped | NW_018654725.1 |
| NW_018654726.1 | ChrY|NW_018654726.1 | 1 | 2 | Remapped | NW_018654726.1 |
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.10 | Chr1 | 3,104 | 3,444 | Submitted | NC_000001.10 |
| NC_000002.11 | Chr2 | 3,053 | 3,406 | Submitted | NC_000002.11 |
| NC_000003.11 | Chr3 | 2,028 | 2,283 | Submitted | NC_000003.11 |
| NC_000004.11 | Chr4 | 2,628 | 2,986 | Submitted | NC_000004.11 |
| NC_000005.9 | Chr5 | 2,121 | 2,365 | Submitted | NC_000005.9 |
| NC_000006.11 | Chr6 | 2,012 | 2,292 | Submitted | NC_000006.11 |
| NC_000007.13 | Chr7 | 2,671 | 2,962 | Submitted | NC_000007.13 |
| NC_000008.10 | Chr8 | 1,826 | 2,042 | Submitted | NC_000008.10 |
| NC_000009.11 | Chr9 | 2,166 | 2,365 | Submitted | NC_000009.11 |
| NC_000010.10 | Chr10 | 2,088 | 2,305 | Submitted | NC_000010.10 |
| NC_000011.9 | Chr11 | 1,760 | 1,963 | Submitted | NC_000011.9 |
| NC_000012.11 | Chr12 | 1,674 | 1,855 | Submitted | NC_000012.11 |
| NC_000013.10 | Chr13 | 1,288 | 1,471 | Submitted | NC_000013.10 |
| NC_000014.8 | Chr14 | 1,154 | 1,279 | Submitted | NC_000014.8 |
| NC_000015.9 | Chr15 | 1,244 | 1,363 | Submitted | NC_000015.9 |
| NC_000016.9 | Chr16 | 1,544 | 1,676 | Submitted | NC_000016.9 |
| NC_000017.10 | Chr17 | 1,445 | 1,584 | Submitted | NC_000017.10 |
| NC_000018.9 | Chr18 | 1,047 | 1,155 | Submitted | NC_000018.9 |
| NC_000019.9 | Chr19 | 1,556 | 1,683 | Submitted | NC_000019.9 |
| NC_000020.10 | Chr20 | 1,122 | 1,234 | Submitted | NC_000020.10 |
| NC_000021.8 | Chr21 | 1,228 | 1,357 | Submitted | NC_000021.8 |
| NC_000022.10 | Chr22 | 826 | 891 | Submitted | NC_000022.10 |
| NC_000023.10 | ChrX | 1,216 | 1,315 | Submitted | NC_000023.10 |
| NC_000024.9 | ChrY | 550 | 591 | Submitted | NC_000024.9 |
| Variant Region remap status | Variant Call remap status | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
| NC_000001.10 | Chr1 | 3,104 | 2,423 | 147 | 47 | 65 | 914 | 3,444 | 2,739 | 153 | 47 | 77 | 926 |
| NC_000002.11 | Chr2 | 3,053 | 2,592 | 22 | 21 | 26 | 776 | 3,406 | 2,921 | 24 | 22 | 35 | 789 |
| NC_000003.11 | Chr3 | 2,028 | 1,667 | 10 | 5 | 3 | 709 | 2,283 | 1,909 | 11 | 7 | 4 | 721 |
| NC_000004.11 | Chr4 | 2,628 | 2,243 | 11 | 7 | 9 | 848 | 2,986 | 2,575 | 12 | 8 | 14 | 873 |
| NC_000005.9 | Chr5 | 2,121 | 1,754 | 5 | 2 | 5 | 682 | 2,365 | 1,984 | 6 | 3 | 6 | 700 |
| NC_000006.11 | Chr6 | 2,012 | 1,748 | 17 | 10 | 14 | 499 | 2,292 | 2,012 | 18 | 10 | 20 | 511 |
| NC_000007.13 | Chr7 | 2,671 | 2,140 | 49 | 19 | 25 | 950 | 2,962 | 2,413 | 50 | 19 | 30 | 971 |
| NC_000008.10 | Chr8 | 1,826 | 1,337 | 3 | 13 | 5 | 725 | 2,042 | 1,529 | 4 | 14 | 6 | 747 |
| NC_000009.11 | Chr9 | 2,166 | 1,801 | 78 | 35 | 64 | 421 | 2,365 | 1,991 | 79 | 36 | 69 | 423 |
| NC_000010.10 | Chr10 | 2,088 | 1,677 | 36 | 17 | 24 | 850 | 2,305 | 1,879 | 37 | 18 | 30 | 866 |
| NC_000011.9 | Chr11 | 1,760 | 1,484 | 5 | 7 | 14 | 548 | 1,963 | 1,669 | 7 | 8 | 18 | 568 |
| NC_000012.11 | Chr12 | 1,674 | 1,392 | 7 | 4 | 9 | 542 | 1,855 | 1,554 | 7 | 5 | 14 | 555 |
| NC_000013.10 | Chr13 | 1,288 | 1,118 | 0 | 0 | 4 | 348 | 1,471 | 1,291 | 0 | 0 | 8 | 360 |
| NC_000014.8 | Chr14 | 1,154 | 892 | 14 | 7 | 8 | 429 | 1,279 | 999 | 17 | 7 | 10 | 446 |
| NC_000015.9 | Chr15 | 1,244 | 990 | 12 | 7 | 11 | 405 | 1,363 | 1,101 | 12 | 7 | 14 | 410 |
| NC_000016.9 | Chr16 | 1,544 | 1,189 | 11 | 10 | 15 | 681 | 1,676 | 1,308 | 12 | 10 | 17 | 697 |
| NC_000017.10 | Chr17 | 1,445 | 1,093 | 10 | 15 | 8 | 552 | 1,584 | 1,215 | 11 | 18 | 11 | 563 |
| NC_000018.9 | Chr18 | 1,047 | 877 | 2 | 1 | 6 | 357 | 1,155 | 979 | 2 | 2 | 8 | 361 |
| NC_000019.9 | Chr19 | 1,556 | 1,299 | 9 | 8 | 6 | 486 | 1,683 | 1,417 | 9 | 11 | 8 | 490 |
| NC_000020.10 | Chr20 | 1,122 | 887 | 5 | 5 | 8 | 472 | 1,234 | 992 | 5 | 6 | 9 | 478 |
| NC_000021.8 | Chr21 | 1,228 | 961 | 8 | 3 | 11 | 529 | 1,357 | 1,075 | 10 | 3 | 14 | 544 |
| NC_000022.10 | Chr22 | 826 | 686 | 15 | 7 | 10 | 220 | 891 | 742 | 15 | 7 | 12 | 227 |
| NC_000023.10 | ChrX | 1,216 | 1,000 | 52 | 22 | 40 | 237 | 1,315 | 1,082 | 54 | 25 | 50 | 239 |
| NC_000024.9 | ChrY | 550 | 404 | 3 | 5 | 13 | 219 | 591 | 436 | 3 | 5 | 18 | 223 |
Samplesets
Number of Samplesets: 1
- Name:
- KWS1 and KWS2
- Size:
- 2
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- None reported
- Sex:
- Male
| Sample ID | Cell Type | Subject ID | Sex | Ethnicity | Subject Age | Subject Phenotype |
|---|---|---|---|---|---|---|
| KWS2 | Whole blood | KWS2 | Male | Kuwaiti Sadui Arabian Ancestry | 68 years | Not reported |
| KWS1 | Whole blood | KWS1 | Male | Kuwaiti Sadui Arabian Ancestry | 39 years | Not reported |
Experimental Details
| Experiment ID | Type | Method | Analysis | Platforms | Number of Variant Calls |
|---|---|---|---|---|---|
| 1 | Discovery | Sequencing | Read depth and paired-end mapping | Illumina HiSeq 2000 | 44,188 |