estd229 (Fakhro et al. 2015)
- Organism:
- Human
- Study Type:
- Case-Control
- Submitter:
- Juan Rodriguez-Flores
- Description:
- CNVs were detected in 97 Qatari individuals, iuncluding 47 with type 2 diabetes, using a combination of sequencing and array technologies. See Variant Summary counts for estd229 in dbVar Variant Summary.
- Publication(s):
- Fakhro et al. 2015
Detailed Information: Download 16676 Variant Regions, Download 152729 Variant Calls, Download Both, FTP
Variant Summary
Assembly used for analysis:
Remapped: GRCh38.p12 (hg38)
Submitted: GRCh37 (hg19)
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.11 | Chr1 | 1,305 | 14,039 | Remapped | NC_000001.11 |
| NC_000002.12 | Chr2 | 1,211 | 11,176 | Remapped | NC_000002.12 |
| NC_000003.12 | Chr3 | 753 | 5,647 | Remapped | NC_000003.12 |
| NC_000004.12 | Chr4 | 1,005 | 12,029 | Remapped | NC_000004.12 |
| NC_000005.10 | Chr5 | 942 | 5,994 | Remapped | NC_000005.10 |
| NC_000006.12 | Chr6 | 903 | 7,616 | Remapped | NC_000006.12 |
| NC_000007.14 | Chr7 | 1,247 | 9,880 | Remapped | NC_000007.14 |
| NC_000008.11 | Chr8 | 829 | 6,337 | Remapped | NC_000008.11 |
| NC_000009.12 | Chr9 | 1,178 | 9,900 | Remapped | NC_000009.12 |
| NC_000010.11 | Chr10 | 824 | 7,057 | Remapped | NC_000010.11 |
| NC_000011.10 | Chr11 | 815 | 5,147 | Remapped | NC_000011.10 |
| NC_000012.12 | Chr12 | 695 | 4,005 | Remapped | NC_000012.12 |
| NC_000013.11 | Chr13 | 414 | 2,482 | Remapped | NC_000013.11 |
| NC_000014.9 | Chr14 | 459 | 4,247 | Remapped | NC_000014.9 |
| NC_000015.10 | Chr15 | 609 | 5,454 | Remapped | NC_000015.10 |
| NC_000016.10 | Chr16 | 715 | 7,800 | Remapped | NC_000016.10 |
| NC_000017.11 | Chr17 | 535 | 4,281 | Remapped | NC_000017.11 |
| NC_000018.10 | Chr18 | 330 | 2,443 | Remapped | NC_000018.10 |
| NC_000019.10 | Chr19 | 571 | 4,172 | Remapped | NC_000019.10 |
| NC_000020.11 | Chr20 | 341 | 4,129 | Remapped | NC_000020.11 |
| NC_000021.9 | Chr21 | 300 | 7,765 | Remapped | NC_000021.9 |
| NC_000022.11 | Chr22 | 393 | 4,247 | Remapped | NC_000022.11 |
| NT_187513.1 | Unplaced|NT_187513.1 | 43 | 1,418 | Remapped | NT_187513.1 |
| NT_187361.1 | Chr1|NT_187361.1 | 9 | 857 | Remapped | NT_187361.1 |
| NT_187364.1 | Chr1|NT_187364.1 | 6 | 57 | Remapped | NT_187364.1 |
| NT_187367.1 | Chr1|NT_187367.1 | 3 | 0 | Remapped | NT_187367.1 |
| NT_187515.1 | Chr1|NT_187515.1 | 14 | 164 | Remapped | NT_187515.1 |
| NT_187516.1 | Chr1|NT_187516.1 | 2 | 2 | Remapped | NT_187516.1 |
| NT_187517.1 | Chr1|NT_187517.1 | 11 | 64 | Remapped | NT_187517.1 |
| NT_187518.1 | Chr1|NT_187518.1 | 12 | 34 | Remapped | NT_187518.1 |
| NT_187519.1 | Chr1|NT_187519.1 | 3 | 12 | Remapped | NT_187519.1 |
| NT_187520.1 | Chr1|NT_187520.1 | 5 | 249 | Remapped | NT_187520.1 |
| NT_187646.1 | Chr1|NT_187646.1 | 12 | 34 | Remapped | NT_187646.1 |
| NW_009646195.1 | Chr1|NW_009646195.1 | 3 | 6 | Remapped | NW_009646195.1 |
| NW_011332687.1 | Chr1|NW_011332687.1 | 4 | 21 | Remapped | NW_011332687.1 |
| NW_011332688.1 | Chr1|NW_011332688.1 | 3 | 11 | Remapped | NW_011332688.1 |
| NW_012132914.1 | Chr1|NW_012132914.1 | 14 | 47 | Remapped | NW_012132914.1 |
| NW_015495298.1 | Chr1|NW_015495298.1 | 11 | 32 | Remapped | NW_015495298.1 |
| NW_017852928.1 | Chr1|NW_017852928.1 | 11 | 32 | Remapped | NW_017852928.1 |
| NW_018654706.1 | Chr1|NW_018654706.1 | 3 | 14 | Remapped | NW_018654706.1 |
| NW_018654707.1 | Chr1|NW_018654707.1 | 9 | 144 | Remapped | NW_018654707.1 |
| NW_018654708.1 | Chr1|NW_018654708.1 | 0 | 17 | Remapped | NW_018654708.1 |
| NW_019805487.1 | Chr1|NW_019805487.1 | 1 | 2 | Remapped | NW_019805487.1 |
| NT_187523.1 | Chr2|NT_187523.1 | 3 | 14 | Remapped | NT_187523.1 |
| NT_187524.1 | Chr2|NT_187524.1 | 10 | 285 | Remapped | NT_187524.1 |
| NT_187525.1 | Chr2|NT_187525.1 | 1 | 1 | Remapped | NT_187525.1 |
| NT_187526.1 | Chr2|NT_187526.1 | 0 | 5 | Remapped | NT_187526.1 |
| NT_187527.1 | Chr2|NT_187527.1 | 8 | 25 | Remapped | NT_187527.1 |
| NT_187528.1 | Chr2|NT_187528.1 | 7 | 41 | Remapped | NT_187528.1 |
| NT_187529.1 | Chr2|NT_187529.1 | 17 | 117 | Remapped | NT_187529.1 |
| NT_187647.1 | Chr2|NT_187647.1 | 3 | 14 | Remapped | NT_187647.1 |
| NT_187648.1 | Chr2|NT_187648.1 | 13 | 237 | Remapped | NT_187648.1 |
| NW_012132915.1 | Chr2|NW_012132915.1 | 19 | 368 | Remapped | NW_012132915.1 |
| NW_015495299.1 | Chr2|NW_015495299.1 | 1 | 2 | Remapped | NW_015495299.1 |
| NW_018654710.1 | Chr2|NW_018654710.1 | 3 | 8 | Remapped | NW_018654710.1 |
| NT_187678.1 | Chr3|NT_187678.1 | 22 | 241 | Remapped | NT_187678.1 |
| NT_187688.1 | Chr3|NT_187688.1 | 22 | 241 | Remapped | NT_187688.1 |
| NT_187689.1 | Chr3|NT_187689.1 | 22 | 241 | Remapped | NT_187689.1 |
| NT_187690.1 | Chr3|NT_187690.1 | 22 | 241 | Remapped | NT_187690.1 |
| NT_187691.1 | Chr3|NT_187691.1 | 22 | 241 | Remapped | NT_187691.1 |
| NT_187532.1 | Chr3|NT_187532.1 | 16 | 192 | Remapped | NT_187532.1 |
| NT_187534.1 | Chr3|NT_187534.1 | 2 | 2 | Remapped | NT_187534.1 |
| NT_187535.1 | Chr3|NT_187535.1 | 1 | 1 | Remapped | NT_187535.1 |
| NT_187537.1 | Chr3|NT_187537.1 | 3 | 4 | Remapped | NT_187537.1 |
| NT_187539.1 | Chr3|NT_187539.1 | 10 | 96 | Remapped | NT_187539.1 |
| NT_187649.1 | Chr3|NT_187649.1 | 22 | 241 | Remapped | NT_187649.1 |
| NW_003871060.2 | Chr3|NW_003871060.2 | 5 | 9 | Remapped | NW_003871060.2 |
| NW_009646198.1 | Chr3|NW_009646198.1 | 3 | 0 | Remapped | NW_009646198.1 |
| NW_011332691.1 | Chr3|NW_011332691.1 | 1 | 4 | Remapped | NW_011332691.1 |
| NW_019805488.1 | Chr3|NW_019805488.1 | 2 | 2 | Remapped | NW_019805488.1 |
| NW_019805489.1 | Chr3|NW_019805489.1 | 3 | 12 | Remapped | NW_019805489.1 |
| NT_187679.1 | Chr4|NT_187679.1 | 14 | 387 | Remapped | NT_187679.1 |
| NT_113793.3 | Chr4|NT_113793.3 | 18 | 1,176 | Remapped | NT_113793.3 |
| NT_187542.1 | Chr4|NT_187542.1 | 2 | 6 | Remapped | NT_187542.1 |
| NT_187543.1 | Chr4|NT_187543.1 | 9 | 301 | Remapped | NT_187543.1 |
| NT_187545.1 | Chr4|NT_187545.1 | 5 | 28 | Remapped | NT_187545.1 |
| NT_187650.1 | Chr4|NT_187650.1 | 26 | 605 | Remapped | NT_187650.1 |
| NW_003315915.1 | Chr4|NW_003315915.1 | 4 | 39 | Remapped | NW_003315915.1 |
| NT_187546.1 | Chr5|NT_187546.1 | 9 | 88 | Remapped | NT_187546.1 |
| NT_187547.1 | Chr5|NT_187547.1 | 3 | 20 | Remapped | NT_187547.1 |
| NT_187548.1 | Chr5|NT_187548.1 | 26 | 178 | Remapped | NT_187548.1 |
| NT_187550.1 | Chr5|NT_187550.1 | 8 | 78 | Remapped | NT_187550.1 |
| NT_187651.1 | Chr5|NT_187651.1 | 49 | 127 | Remapped | NT_187651.1 |
| NT_187652.1 | Chr5|NT_187652.1 | 6 | 25 | Remapped | NT_187652.1 |
| NW_003315917.2 | Chr5|NW_003315917.2 | 58 | 162 | Remapped | NW_003315917.2 |
| NW_003315919.1 | Chr5|NW_003315919.1 | 2 | 4 | Remapped | NW_003315919.1 |
| NW_003315920.1 | Chr5|NW_003315920.1 | 1 | 1 | Remapped | NW_003315920.1 |
| NW_009646199.1 | Chr5|NW_009646199.1 | 3 | 86 | Remapped | NW_009646199.1 |
| NW_016107297.1 | Chr5|NW_016107297.1 | 7 | 37 | Remapped | NW_016107297.1 |
| NW_016107298.1 | Chr5|NW_016107298.1 | 3 | 61 | Remapped | NW_016107298.1 |
| NT_187552.1 | Chr6|NT_187552.1 | 1 | 1 | Remapped | NT_187552.1 |
| NT_187553.1 | Chr6|NT_187553.1 | 11 | 91 | Remapped | NT_187553.1 |
| NW_004166862.2 | Chr6|NW_004166862.2 | 3 | 10 | Remapped | NW_004166862.2 |
| NW_018654713.1 | Chr6|NW_018654713.1 | 2 | 3 | Remapped | NW_018654713.1 |
| NT_187558.1 | Chr7|NT_187558.1 | 8 | 24 | Remapped | NT_187558.1 |
| NT_187559.1 | Chr7|NT_187559.1 | 6 | 19 | Remapped | NT_187559.1 |
| NT_187560.1 | Chr7|NT_187560.1 | 13 | 109 | Remapped | NT_187560.1 |
| NT_187561.1 | Chr7|NT_187561.1 | 13 | 46 | Remapped | NT_187561.1 |
| NT_187562.1 | Chr7|NT_187562.1 | 18 | 151 | Remapped | NT_187562.1 |
| NT_187563.1 | Chr7|NT_187563.1 | 5 | 22 | Remapped | NT_187563.1 |
| NT_187564.1 | Chr7|NT_187564.1 | 3 | 3 | Remapped | NT_187564.1 |
| NT_187653.1 | Chr7|NT_187653.1 | 8 | 25 | Remapped | NT_187653.1 |
| NW_018654714.1 | Chr7|NW_018654714.1 | 17 | 26 | Remapped | NW_018654714.1 |
| NW_018654715.1 | Chr7|NW_018654715.1 | 0 | 22 | Remapped | NW_018654715.1 |
| NT_187680.1 | Chr8|NT_187680.1 | 3 | 7 | Remapped | NT_187680.1 |
| NT_187565.1 | Chr8|NT_187565.1 | 6 | 12 | Remapped | NT_187565.1 |
| NT_187566.1 | Chr8|NT_187566.1 | 2 | 39 | Remapped | NT_187566.1 |
| NT_187567.1 | Chr8|NT_187567.1 | 5 | 45 | Remapped | NT_187567.1 |
| NT_187568.1 | Chr8|NT_187568.1 | 14 | 130 | Remapped | NT_187568.1 |
| NT_187569.1 | Chr8|NT_187569.1 | 1 | 1 | Remapped | NT_187569.1 |
| NT_187570.1 | Chr8|NT_187570.1 | 18 | 243 | Remapped | NT_187570.1 |
| NT_187571.1 | Chr8|NT_187571.1 | 7 | 109 | Remapped | NT_187571.1 |
| NT_187573.1 | Chr8|NT_187573.1 | 5 | 23 | Remapped | NT_187573.1 |
| NT_187574.1 | Chr8|NT_187574.1 | 5 | 11 | Remapped | NT_187574.1 |
| NT_187576.1 | Chr8|NT_187576.1 | 29 | 423 | Remapped | NT_187576.1 |
| NT_187577.1 | Chr8|NT_187577.1 | 1 | 1 | Remapped | NT_187577.1 |
| NT_187654.1 | Chr8|NT_187654.1 | 12 | 27 | Remapped | NT_187654.1 |
| NW_017852931.1 | Chr8|NW_017852931.1 | 1 | 2 | Remapped | NW_017852931.1 |
| NW_018654716.1 | Chr8|NW_018654716.1 | 2 | 32 | Remapped | NW_018654716.1 |
| NW_018654717.1 | Chr8|NW_018654717.1 | 88 | 974 | Remapped | NW_018654717.1 |
| NT_187578.1 | Chr9|NT_187578.1 | 1 | 1 | Remapped | NT_187578.1 |
| NW_009646201.1 | Chr9|NW_009646201.1 | 5 | 5 | Remapped | NW_009646201.1 |
| NT_187579.1 | Chr10|NT_187579.1 | 22 | 494 | Remapped | NT_187579.1 |
| NW_003315934.1 | Chr10|NW_003315934.1 | 4 | 13 | Remapped | NW_003315934.1 |
| NW_003315935.1 | Chr10|NW_003315935.1 | 2 | 2 | Remapped | NW_003315935.1 |
| NW_009646202.1 | Chr10|NW_009646202.1 | 1 | 1 | Remapped | NW_009646202.1 |
| NW_013171806.1 | Chr10|NW_013171806.1 | 3 | 30 | Remapped | NW_013171806.1 |
| NT_187681.1 | Chr11|NT_187681.1 | 2 | 6 | Remapped | NT_187681.1 |
| NT_187657.1 | Chr11|NT_187657.1 | 6 | 33 | Remapped | NT_187657.1 |
| NT_187581.1 | Chr11|NT_187581.1 | 3 | 8 | Remapped | NT_187581.1 |
| NT_187583.1 | Chr11|NT_187583.1 | 3 | 9 | Remapped | NT_187583.1 |
| NT_187584.1 | Chr11|NT_187584.1 | 9 | 39 | Remapped | NT_187584.1 |
| NT_187585.1 | Chr11|NT_187585.1 | 5 | 69 | Remapped | NT_187585.1 |
| NT_187586.1 | Chr11|NT_187586.1 | 5 | 187 | Remapped | NT_187586.1 |
| NW_003871074.1 | Chr11|NW_003871074.1 | 0 | 1 | Remapped | NW_003871074.1 |
| NW_011332695.1 | Chr11|NW_011332695.1 | 3 | 9 | Remapped | NW_011332695.1 |
| NW_015148966.1 | Chr11|NW_015148966.1 | 4 | 12 | Remapped | NW_015148966.1 |
| NW_019805495.1 | Chr11|NW_019805495.1 | 3 | 4 | Remapped | NW_019805495.1 |
| NT_187658.1 | Chr12|NT_187658.1 | 9 | 24 | Remapped | NT_187658.1 |
| NT_187587.1 | Chr12|NT_187587.1 | 6 | 11 | Remapped | NT_187587.1 |
| NW_003315940.1 | Chr12|NW_003315940.1 | 3 | 64 | Remapped | NW_003315940.1 |
| NW_003571049.1 | Chr12|NW_003571049.1 | 16 | 322 | Remapped | NW_003571049.1 |
| NW_003571050.1 | Chr12|NW_003571050.1 | 3 | 4 | Remapped | NW_003571050.1 |
| NW_011332696.1 | Chr12|NW_011332696.1 | 3 | 11 | Remapped | NW_011332696.1 |
| NW_013171809.1 | Chr12|NW_013171809.1 | 6 | 24 | Remapped | NW_013171809.1 |
| NW_018654718.1 | Chr12|NW_018654718.1 | 3 | 3 | Remapped | NW_018654718.1 |
| NW_019805499.1 | Chr12|NW_019805499.1 | 1 | 2 | Remapped | NW_019805499.1 |
| NT_187592.1 | Chr13|NT_187592.1 | 11 | 72 | Remapped | NT_187592.1 |
| NT_187594.1 | Chr13|NT_187594.1 | 13 | 190 | Remapped | NT_187594.1 |
| NT_187596.1 | Chr13|NT_187596.1 | 1 | 3 | Remapped | NT_187596.1 |
| NW_009646205.1 | Chr13|NW_009646205.1 | 3 | 5 | Remapped | NW_009646205.1 |
| NW_011332698.1 | Chr13|NW_011332698.1 | 5 | 59 | Remapped | NW_011332698.1 |
| NW_011332699.1 | Chr13|NW_011332699.1 | 4 | 151 | Remapped | NW_011332699.1 |
| NT_113796.3 | Chr14|NT_113796.3 | 17 | 875 | Remapped | NT_113796.3 |
| NT_187379.1 | Chr14|NT_187379.1 | 1 | 1 | Remapped | NT_187379.1 |
| NT_187599.1 | Chr14|NT_187599.1 | 4 | 30 | Remapped | NT_187599.1 |
| NT_187600.1 | Chr14|NT_187600.1 | 40 | 203 | Remapped | NT_187600.1 |
| NT_187601.1 | Chr14|NT_187601.1 | 3 | 7 | Remapped | NT_187601.1 |
| NW_018654722.1 | Chr14|NW_018654722.1 | 2 | 4 | Remapped | NW_018654722.1 |
| NT_187659.1 | Chr15|NT_187659.1 | 17 | 228 | Remapped | NT_187659.1 |
| NT_187660.1 | Chr15|NT_187660.1 | 35 | 147 | Remapped | NT_187660.1 |
| NT_187382.1 | Chr15|NT_187382.1 | 1 | 89 | Remapped | NT_187382.1 |
| NT_187602.1 | Chr15|NT_187602.1 | 1 | 169 | Remapped | NT_187602.1 |
| NT_187603.1 | Chr15|NT_187603.1 | 18 | 224 | Remapped | NT_187603.1 |
| NT_187604.1 | Chr15|NT_187604.1 | 13 | 105 | Remapped | NT_187604.1 |
| NT_187605.1 | Chr15|NT_187605.1 | 7 | 22 | Remapped | NT_187605.1 |
| NT_187606.1 | Chr15|NT_187606.1 | 21 | 66 | Remapped | NT_187606.1 |
| NW_003315943.1 | Chr15|NW_003315943.1 | 11 | 93 | Remapped | NW_003315943.1 |
| NW_011332701.1 | Chr15|NW_011332701.1 | 36 | 155 | Remapped | NW_011332701.1 |
| NT_187383.1 | Chr16|NT_187383.1 | 1 | 1 | Remapped | NT_187383.1 |
| NT_187607.1 | Chr16|NT_187607.1 | 55 | 285 | Remapped | NT_187607.1 |
| NT_187608.1 | Chr16|NT_187608.1 | 2 | 5 | Remapped | NT_187608.1 |
| NT_187610.1 | Chr16|NT_187610.1 | 1 | 19 | Remapped | NT_187610.1 |
| NW_012132921.1 | Chr16|NW_012132921.1 | 1 | 1 | Remapped | NW_012132921.1 |
| NW_017852933.1 | Chr16|NW_017852933.1 | 4 | 12 | Remapped | NW_017852933.1 |
| NT_187661.1 | Chr17|NT_187661.1 | 10 | 147 | Remapped | NT_187661.1 |
| NT_187662.1 | Chr17|NT_187662.1 | 7 | 54 | Remapped | NT_187662.1 |
| NT_187663.1 | Chr17|NT_187663.1 | 34 | 337 | Remapped | NT_187663.1 |
| NT_187664.1 | Chr17|NT_187664.1 | 6 | 32 | Remapped | NT_187664.1 |
| NW_003871093.1 | Chr17|NW_003871093.1 | 5 | 52 | Remapped | NW_003871093.1 |
| NT_167251.2 | Chr17|NT_167251.2 | 1 | 10 | Remapped | NT_167251.2 |
| NT_187611.1 | Chr17|NT_187611.1 | 5 | 15 | Remapped | NT_187611.1 |
| NT_187612.1 | Chr17|NT_187612.1 | 8 | 73 | Remapped | NT_187612.1 |
| NT_187613.1 | Chr17|NT_187613.1 | 12 | 53 | Remapped | NT_187613.1 |
| NT_187614.1 | Chr17|NT_187614.1 | 32 | 585 | Remapped | NT_187614.1 |
| NT_187615.1 | Chr17|NT_187615.1 | 2 | 8 | Remapped | NT_187615.1 |
| NW_003315952.3 | Chr17|NW_003315952.3 | 14 | 102 | Remapped | NW_003315952.3 |
| NW_003315953.2 | Chr17|NW_003315953.2 | 1 | 1 | Remapped | NW_003315953.2 |
| NW_003315954.1 | Chr17|NW_003315954.1 | 3 | 84 | Remapped | NW_003315954.1 |
| NW_003315955.1 | Chr17|NW_003315955.1 | 3 | 6 | Remapped | NW_003315955.1 |
| NW_003871091.1 | Chr17|NW_003871091.1 | 3 | 4 | Remapped | NW_003871091.1 |
| NW_003871092.1 | Chr17|NW_003871092.1 | 2 | 12 | Remapped | NW_003871092.1 |
| NW_017363817.1 | Chr17|NW_017363817.1 | 1 | 2 | Remapped | NW_017363817.1 |
| NW_017363819.1 | Chr17|NW_017363819.1 | 13 | 97 | Remapped | NW_017363819.1 |
| NT_187665.1 | Chr18|NT_187665.1 | 2 | 3 | Remapped | NT_187665.1 |
| NT_187666.1 | Chr18|NT_187666.1 | 12 | 150 | Remapped | NT_187666.1 |
| NT_187617.1 | Chr18|NT_187617.1 | 16 | 100 | Remapped | NT_187617.1 |
| NW_003315956.1 | Chr18|NW_003315956.1 | 3 | 11 | Remapped | NW_003315956.1 |
| NW_003315957.1 | Chr18|NW_003315957.1 | 3 | 21 | Remapped | NW_003315957.1 |
| NW_003315958.1 | Chr18|NW_003315958.1 | 2 | 3 | Remapped | NW_003315958.1 |
| NW_003315959.1 | Chr18|NW_003315959.1 | 3 | 13 | Remapped | NW_003315959.1 |
| NW_003315961.1 | Chr18|NW_003315961.1 | 12 | 150 | Remapped | NW_003315961.1 |
| NT_187693.1 | Chr19|NT_187693.1 | 37 | 277 | Remapped | NT_187693.1 |
| NW_003571061.2 | Chr19|NW_003571061.2 | 12 | 59 | Remapped | NW_003571061.2 |
| NW_003571057.2 | Chr19|NW_003571057.2 | 6 | 35 | Remapped | NW_003571057.2 |
| NW_003571058.2 | Chr19|NW_003571058.2 | 6 | 35 | Remapped | NW_003571058.2 |
| NW_003571059.2 | Chr19|NW_003571059.2 | 6 | 35 | Remapped | NW_003571059.2 |
| NW_003571060.1 | Chr19|NW_003571060.1 | 16 | 86 | Remapped | NW_003571060.1 |
| NW_003571056.2 | Chr19|NW_003571056.2 | 6 | 35 | Remapped | NW_003571056.2 |
| NW_003571055.2 | Chr19|NW_003571055.2 | 11 | 57 | Remapped | NW_003571055.2 |
| NT_187621.1 | Chr19|NT_187621.1 | 2 | 3 | Remapped | NT_187621.1 |
| NT_187622.1 | Chr19|NT_187622.1 | 3 | 39 | Remapped | NT_187622.1 |
| NW_003315962.1 | Chr19|NW_003315962.1 | 9 | 44 | Remapped | NW_003315962.1 |
| NW_003315963.1 | Chr19|NW_003315963.1 | 2 | 6 | Remapped | NW_003315963.1 |
| NW_003315964.2 | Chr19|NW_003315964.2 | 5 | 73 | Remapped | NW_003315964.2 |
| NW_003315965.1 | Chr19|NW_003315965.1 | 3 | 3 | Remapped | NW_003315965.1 |
| NW_003571054.1 | Chr19|NW_003571054.1 | 17 | 102 | Remapped | NW_003571054.1 |
| NW_009646206.1 | Chr19|NW_009646206.1 | 14 | 68 | Remapped | NW_009646206.1 |
| NT_187623.1 | Chr20|NT_187623.1 | 2 | 30 | Remapped | NT_187623.1 |
| NT_187624.1 | Chr20|NT_187624.1 | 3 | 9 | Remapped | NT_187624.1 |
| NT_187626.1 | Chr21|NT_187626.1 | 2 | 2 | Remapped | NT_187626.1 |
| NT_187628.1 | Chr21|NT_187628.1 | 6 | 19 | Remapped | NT_187628.1 |
| NW_003315968.2 | Chr21|NW_003315968.2 | 3 | 11 | Remapped | NW_003315968.2 |
| NT_187682.1 | Chr22|NT_187682.1 | 6 | 15 | Remapped | NT_187682.1 |
| NW_015148969.1 | Chr22|NW_015148969.1 | 3 | 5 | Remapped | NW_015148969.1 |
| NT_187386.1 | Chr22|NT_187386.1 | 1 | 1 | Remapped | NT_187386.1 |
| NT_187629.1 | Chr22|NT_187629.1 | 4 | 6 | Remapped | NT_187629.1 |
| NT_187630.1 | Chr22|NT_187630.1 | 3 | 76 | Remapped | NT_187630.1 |
| NT_187632.1 | Chr22|NT_187632.1 | 6 | 48 | Remapped | NT_187632.1 |
| NT_187633.1 | Chr22|NT_187633.1 | 20 | 232 | Remapped | NT_187633.1 |
| NW_003315972.2 | Chr22|NW_003315972.2 | 6 | 97 | Remapped | NW_003315972.2 |
| NW_009646209.1 | ChrY|NW_009646209.1 | 9 | 388 | Remapped | NW_009646209.1 |
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.10 | Chr1 | 1,439 | 18,490 | Submitted | NC_000001.10 |
| NC_000002.11 | Chr2 | 1,241 | 11,804 | Submitted | NC_000002.11 |
| NC_000003.11 | Chr3 | 751 | 5,649 | Submitted | NC_000003.11 |
| NC_000004.11 | Chr4 | 1,005 | 12,029 | Submitted | NC_000004.11 |
| NC_000005.9 | Chr5 | 942 | 5,994 | Submitted | NC_000005.9 |
| NC_000006.11 | Chr6 | 905 | 7,620 | Submitted | NC_000006.11 |
| NC_000007.13 | Chr7 | 1,269 | 10,118 | Submitted | NC_000007.13 |
| NC_000008.10 | Chr8 | 840 | 6,661 | Submitted | NC_000008.10 |
| NC_000009.11 | Chr9 | 1,184 | 10,096 | Submitted | NC_000009.11 |
| NC_000010.10 | Chr10 | 826 | 7,077 | Submitted | NC_000010.10 |
| NC_000011.9 | Chr11 | 816 | 5,148 | Submitted | NC_000011.9 |
| NC_000012.11 | Chr12 | 707 | 4,036 | Submitted | NC_000012.11 |
| NC_000013.10 | Chr13 | 417 | 2,487 | Submitted | NC_000013.10 |
| NC_000014.8 | Chr14 | 464 | 4,307 | Submitted | NC_000014.8 |
| NC_000015.9 | Chr15 | 620 | 5,572 | Submitted | NC_000015.9 |
| NC_000016.9 | Chr16 | 721 | 7,912 | Submitted | NC_000016.9 |
| NC_000017.10 | Chr17 | 549 | 4,797 | Submitted | NC_000017.10 |
| NC_000018.9 | Chr18 | 334 | 2,473 | Submitted | NC_000018.9 |
| NC_000019.9 | Chr19 | 599 | 4,403 | Submitted | NC_000019.9 |
| NC_000020.10 | Chr20 | 342 | 4,132 | Submitted | NC_000020.10 |
| NC_000021.8 | Chr21 | 297 | 7,686 | Submitted | NC_000021.8 |
| NC_000022.10 | Chr22 | 408 | 4,238 | Submitted | NC_000022.10 |
| Variant Region remap status | Variant Call remap status | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
| NC_000001.10 | Chr1 | 1,439 | 1,090 | 212 | 40 | 20 | 77 | 18,490 | 13,789 | 3,545 | 231 | 181 | 744 |
| NC_000002.11 | Chr2 | 1,241 | 1,083 | 52 | 17 | 6 | 83 | 11,804 | 9,376 | 805 | 349 | 48 | 1,226 |
| NC_000003.11 | Chr3 | 751 | 680 | 16 | 5 | 1 | 49 | 5,649 | 5,083 | 116 | 77 | 2 | 371 |
| NC_000004.11 | Chr4 | 1,005 | 930 | 25 | 4 | 0 | 46 | 12,029 | 10,860 | 294 | 11 | 0 | 864 |
| NC_000005.9 | Chr5 | 942 | 785 | 16 | 1 | 0 | 140 | 5,994 | 5,222 | 75 | 1 | 0 | 696 |
| NC_000006.11 | Chr6 | 905 | 857 | 20 | 8 | 0 | 20 | 7,620 | 6,941 | 443 | 127 | 4 | 105 |
| NC_000007.13 | Chr7 | 1,269 | 1,066 | 81 | 31 | 14 | 77 | 10,118 | 8,644 | 633 | 401 | 126 | 314 |
| NC_000008.10 | Chr8 | 840 | 635 | 26 | 8 | 1 | 170 | 6,661 | 4,726 | 283 | 102 | 1 | 1,549 |
| NC_000009.11 | Chr9 | 1,184 | 1,005 | 118 | 41 | 11 | 9 | 10,096 | 8,940 | 871 | 218 | 26 | 41 |
| NC_000010.10 | Chr10 | 826 | 692 | 84 | 17 | 1 | 32 | 7,077 | 5,977 | 440 | 101 | 19 | 540 |
| NC_000011.9 | Chr11 | 816 | 759 | 23 | 1 | 1 | 32 | 5,148 | 4,700 | 117 | 1 | 1 | 329 |
| NC_000012.11 | Chr12 | 707 | 640 | 3 | 8 | 6 | 50 | 4,036 | 3,464 | 10 | 25 | 22 | 515 |
| NC_000013.10 | Chr13 | 417 | 387 | 3 | 0 | 0 | 27 | 2,487 | 2,257 | 3 | 0 | 0 | 227 |
| NC_000014.8 | Chr14 | 464 | 361 | 33 | 16 | 5 | 49 | 4,307 | 3,568 | 337 | 98 | 60 | 244 |
| NC_000015.9 | Chr15 | 620 | 485 | 32 | 12 | 0 | 91 | 5,572 | 4,550 | 258 | 34 | 0 | 730 |
| NC_000016.9 | Chr16 | 721 | 642 | 9 | 1 | 6 | 63 | 7,912 | 7,445 | 25 | 8 | 112 | 322 |
| NC_000017.10 | Chr17 | 549 | 382 | 19 | 9 | 1 | 138 | 4,797 | 3,352 | 183 | 113 | 53 | 1,096 |
| NC_000018.9 | Chr18 | 334 | 281 | 6 | 1 | 4 | 42 | 2,473 | 2,026 | 20 | 2 | 30 | 395 |
| NC_000019.9 | Chr19 | 599 | 504 | 37 | 8 | 0 | 50 | 4,403 | 3,807 | 257 | 38 | 0 | 301 |
| NC_000020.10 | Chr20 | 342 | 328 | 8 | 0 | 1 | 5 | 4,132 | 4,080 | 10 | 0 | 3 | 39 |
| NC_000021.8 | Chr21 | 297 | 269 | 14 | 0 | 0 | 14 | 7,686 | 7,298 | 207 | 0 | 0 | 181 |
| NC_000022.10 | Chr22 | 408 | 331 | 29 | 5 | 9 | 34 | 4,238 | 3,339 | 368 | 19 | 126 | 386 |
Samplesets
Number of Samplesets: 2
- Sampleset ID:
- 1
- Sampleset Type:
- Control
- Size:
- 50
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- None reported
| Sample ID | Subject ID | Ethnicity | Subject Phenotype |
|---|---|---|---|
| DGMQ-31129 | DGMQ-31129 | Qatari | Not reported |
| DGMQ-32371 | DGMQ-32371 | Qatari | Not reported |
| DGMQ-31274 | DGMQ-31274 | Qatari | Not reported |
| DGMQ-32180 | DGMQ-32180 | Qatari | Not reported |
| DGMQ-31131 | DGMQ-31131 | Qatari | Not reported |
| DGMQ-31872 | DGMQ-31872 | Qatari | Not reported |
| DGMQ-31125 | DGMQ-31125 | Qatari | Not reported |
| DGMQ-32220 | DGMQ-32220 | Qatari | Not reported |
| DGMQ-32287 | DGMQ-32287 | Qatari | Not reported |
| DGMQ-32059 | DGMQ-32059 | Qatari | Not reported |
| DGMQ-31269 | DGMQ-31269 | Qatari | Not reported |
| DGMQ-32309 | DGMQ-32309 | Qatari | Not reported |
| DGMQ-32064 | DGMQ-32064 | Qatari | Not reported |
| DGMQ-32145 | DGMQ-32145 | Qatari | Not reported |
| DGMQ-31226 | DGMQ-31226 | Qatari | Not reported |
| DGMQ-31244 | DGMQ-31244 | Qatari | Not reported |
| DGMQ-32056 | DGMQ-32056 | Qatari | Not reported |
| DGMQ-31609 | DGMQ-31609 | Qatari | Not reported |
| DGMQ-32182 | DGMQ-32182 | Qatari | Not reported |
| DGMQ-32293 | DGMQ-32293 | Qatari | Not reported |
| DGMQ-31614 | DGMQ-31614 | Qatari | Not reported |
| DGMQ-31611 | DGMQ-31611 | Qatari | Not reported |
| DGMQ-32044 | DGMQ-32044 | Qatari | Not reported |
| DGMQ-32219 | DGMQ-32219 | Qatari | Not reported |
| DGMQ-32167 | DGMQ-32167 | Qatari | Not reported |
| DGMQ-32308 | DGMQ-32308 | Qatari | Not reported |
| DGMQ-31254 | DGMQ-31254 | Qatari | Not reported |
| DGMQ-31245 | DGMQ-31245 | Qatari | Not reported |
| DGMQ-31425 | DGMQ-31425 | Qatari | Not reported |
| DGMQ-31230 | DGMQ-31230 | Qatari | Not reported |
| DGMQ-32325 | DGMQ-32325 | Qatari | Not reported |
| DGMQ-32368 | DGMQ-32368 | Qatari | Not reported |
| DGMQ-32215 | DGMQ-32215 | Qatari | Not reported |
| DGMQ-32118 | DGMQ-32118 | Qatari | Not reported |
| DGMQ-32977 | DGMQ-32977 | Qatari | Not reported |
| DGMQ-32061 | DGMQ-32061 | Qatari | Not reported |
| DGMQ-31123 | DGMQ-31123 | Qatari | Not reported |
| DGMQ-32285 | DGMQ-32285 | Qatari | Not reported |
| DGMQ-31568 | DGMQ-31568 | Qatari | Not reported |
| DGMQ-31574 | DGMQ-31574 | Qatari | Not reported |
| DGMQ-32121 | DGMQ-32121 | Qatari | Not reported |
| DGMQ-32302 | DGMQ-32302 | Qatari | Not reported |
| DGMQ-31606 | DGMQ-31606 | Qatari | Not reported |
| DGMQ-31607 | DGMQ-31607 | Qatari | Not reported |
| DGMQ-31617 | DGMQ-31617 | Qatari | Not reported |
| DGMQ-32060 | DGMQ-32060 | Qatari | Not reported |
| DGMQ-32273 | DGMQ-32273 | Qatari | Not reported |
| DGMQ-32200 | DGMQ-32200 | Qatari | Not reported |
| DGMQ-32148 | DGMQ-32148 | Qatari | Not reported |
| DGMQ-32251 | DGMQ-32251 | Qatari | Not reported |
- Sampleset ID:
- 2
- Sampleset Type:
- Case
- Size:
- 47
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- Diabetes Mellitus, Type 2
| Sample ID | Subject ID | Ethnicity | Subject Phenotype |
|---|---|---|---|
| DGMQ-32224 | DGMQ-32224 | Qatari | Diabetes Mellitus, Type 2 |
| DGMQ-31556 | DGMQ-31556 | Qatari | Diabetes Mellitus, Type 2 |
| DGMQ-31641 | DGMQ-31641 | Qatari | Diabetes Mellitus, Type 2 |
| DGMQ-31623 | DGMQ-31623 | Qatari | Diabetes Mellitus, Type 2 |
| DGMQ-31583 | DGMQ-31583 | Qatari | Diabetes Mellitus, Type 2 |
| DGMQ-31036 | DGMQ-31036 | Qatari | Diabetes Mellitus, Type 2 |
| DGMQ-31444 | DGMQ-31444 | Qatari | Diabetes Mellitus, Type 2 |
| DGMQ-31717 | DGMQ-31717 | Qatari | Diabetes Mellitus, Type 2 |
| DGMQ-31513 | DGMQ-31513 | Qatari | Diabetes Mellitus, Type 2 |
| DGMQ-31455 | DGMQ-31455 | Qatari | Diabetes Mellitus, Type 2 |
| DGMQ-31029 | DGMQ-31029 | Qatari | Diabetes Mellitus, Type 2 |
| DGMQ-31625 | DGMQ-31625 | Qatari | Diabetes Mellitus, Type 2 |
| DGMQ-31470 | DGMQ-31470 | Qatari | Diabetes Mellitus, Type 2 |
| DGMQ-31497 | DGMQ-31497 | Qatari | Diabetes Mellitus, Type 2 |
| DGMQ-31508 | DGMQ-31508 | Qatari | Diabetes Mellitus, Type 2 |
| DGMQ-32291 | DGMQ-32291 | Qatari | Diabetes Mellitus, Type 2 |
| DGMQ-31433 | DGMQ-31433 | Qatari | Diabetes Mellitus, Type 2 |
| DGMQ-31711 | DGMQ-31711 | Qatari | Diabetes Mellitus, Type 2 |
| DGMQ-31529 | DGMQ-31529 | Qatari | Diabetes Mellitus, Type 2 |
| DGMQ-31582 | DGMQ-31582 | Qatari | Diabetes Mellitus, Type 2 |
| DGMQ-31058 | DGMQ-31058 | Qatari | Diabetes Mellitus, Type 2 |
| DGMQ-31177 | DGMQ-31177 | Qatari | Diabetes Mellitus, Type 2 |
| DGMQ-32250 | DGMQ-32250 | Qatari | Diabetes Mellitus, Type 2 |
| DGMQ-31724 | DGMQ-31724 | Qatari | Diabetes Mellitus, Type 2 |
| DGMQ-31489 | DGMQ-31489 | Qatari | Diabetes Mellitus, Type 2 |
| DGMQ-31714 | DGMQ-31714 | Qatari | Diabetes Mellitus, Type 2 |
| DGMQ-31237 | DGMQ-31237 | Qatari | Diabetes Mellitus, Type 2 |
| DGMQ-32311 | DGMQ-32311 | Qatari | Diabetes Mellitus, Type 2 |
| DGMQ-31552 | DGMQ-31552 | Qatari | Diabetes Mellitus, Type 2 |
| DGMQ-31452 | DGMQ-31452 | Qatari | Diabetes Mellitus, Type 2 |
| DGMQ-31416 | DGMQ-31416 | Qatari | Diabetes Mellitus, Type 2 |
| DGMQ-31639 | DGMQ-31639 | Qatari | Diabetes Mellitus, Type 2 |
| DGMQ-31406 | DGMQ-31406 | Qatari | Diabetes Mellitus, Type 2 |
| DGMQ-31449 | DGMQ-31449 | Qatari | Diabetes Mellitus, Type 2 |
| DGMQ-31725 | DGMQ-31725 | Qatari | Diabetes Mellitus, Type 2 |
| DGMQ-31644 | DGMQ-31644 | Qatari | Diabetes Mellitus, Type 2 |
| DGMQ-31601 | DGMQ-31601 | Qatari | Diabetes Mellitus, Type 2 |
| DGMQ-31030 | DGMQ-31030 | Qatari | Diabetes Mellitus, Type 2 |
| DGMQ-31108 | DGMQ-31108 | Qatari | Diabetes Mellitus, Type 2 |
| DGMQ-32160 | DGMQ-32160 | Qatari | Diabetes Mellitus, Type 2 |
| DGMQ-31705 | DGMQ-31705 | Qatari | Diabetes Mellitus, Type 2 |
| DGMQ-31105 | DGMQ-31105 | Qatari | Diabetes Mellitus, Type 2 |
| DGMQ-31514 | DGMQ-31514 | Qatari | Diabetes Mellitus, Type 2 |
| DGMQ-31643 | DGMQ-31643 | Qatari | Diabetes Mellitus, Type 2 |
| DGMQ-31516 | DGMQ-31516 | Qatari | Diabetes Mellitus, Type 2 |
| DGMQ-31537 | DGMQ-31537 | Qatari | Diabetes Mellitus, Type 2 |
| DGMQ-31005 | DGMQ-31005 | Qatari | Diabetes Mellitus, Type 2 |
Experimental Details
| Experiment ID | Type | Method | Analysis | Platforms | Number of Variant Calls |
|---|---|---|---|---|---|
| 1 | Discovery | Sequencing | Other | HiSeq 2000 | 0 |
| 2 | Discovery | Sequencing | Read depth | HiSeq 2000 | 0 |
| 3 | Discovery | SNP array | Probe signal intensity | Omni2.5M | 0 |
| 4 | Discovery | SNP array | Other | Omni2.5M | 0 |
| 5 | Discovery | Merging of experiments 1,2,3,4 | Merging of experiments 1,2,3,4 | See merged experiments | 152,729 |