estd224 (Suktitipat et al. 2014)
- Organism:
- Human
- Study Type:
- Control Set
- Submitter:
- Chaiwat Naktang
- Submitter URL:
- http://thaicnv.icbs.mahidol.ac.th/thaicnv
- Description:
- Thai population control set (3,017 individuals from 7 GWAS studies) using the Illumina SNP array. See Variant Summary counts for estd224 in dbVar Variant Summary.
- Publication(s):
- Suktitipat et al. 2014
Detailed Information: Download 3576 Variant Regions, Download 23458 Variant Calls, Download Both, FTP
Variant Summary
Assembly used for analysis:
Remapped: GRCh38.p12 (hg38)
Remapped: GRCh37.p13 (hg19)
Submitted: NCBI36 (hg18)
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.11 | Chr1 | 169 | 748 | Remapped | NC_000001.11 |
| NC_000002.12 | Chr2 | 263 | 1,132 | Remapped | NC_000002.12 |
| NC_000003.12 | Chr3 | 247 | 3,354 | Remapped | NC_000003.12 |
| NC_000004.12 | Chr4 | 218 | 2,733 | Remapped | NC_000004.12 |
| NC_000005.10 | Chr5 | 226 | 687 | Remapped | NC_000005.10 |
| NC_000006.12 | Chr6 | 200 | 1,354 | Remapped | NC_000006.12 |
| NC_000007.14 | Chr7 | 220 | 665 | Remapped | NC_000007.14 |
| NC_000008.11 | Chr8 | 225 | 1,650 | Remapped | NC_000008.11 |
| NC_000009.12 | Chr9 | 210 | 683 | Remapped | NC_000009.12 |
| NC_000010.11 | Chr10 | 149 | 605 | Remapped | NC_000010.11 |
| NC_000011.10 | Chr11 | 194 | 1,498 | Remapped | NC_000011.10 |
| NC_000012.12 | Chr12 | 151 | 496 | Remapped | NC_000012.12 |
| NC_000013.11 | Chr13 | 145 | 667 | Remapped | NC_000013.11 |
| NC_000014.9 | Chr14 | 129 | 1,568 | Remapped | NC_000014.9 |
| NC_000015.10 | Chr15 | 143 | 887 | Remapped | NC_000015.10 |
| NC_000016.10 | Chr16 | 171 | 973 | Remapped | NC_000016.10 |
| NC_000017.11 | Chr17 | 99 | 1,197 | Remapped | NC_000017.11 |
| NC_000018.10 | Chr18 | 90 | 959 | Remapped | NC_000018.10 |
| NC_000019.10 | Chr19 | 94 | 743 | Remapped | NC_000019.10 |
| NC_000020.11 | Chr20 | 90 | 203 | Remapped | NC_000020.11 |
| NC_000021.9 | Chr21 | 54 | 184 | Remapped | NC_000021.9 |
| NC_000022.11 | Chr22 | 68 | 333 | Remapped | NC_000022.11 |
| NT_187516.1 | Chr1|NT_187516.1 | 2 | 4 | Remapped | NT_187516.1 |
| NT_187517.1 | Chr1|NT_187517.1 | 1 | 2 | Remapped | NT_187517.1 |
| NT_187519.1 | Chr1|NT_187519.1 | 1 | 1 | Remapped | NT_187519.1 |
| NW_009646195.1 | Chr1|NW_009646195.1 | 1 | 2 | Remapped | NW_009646195.1 |
| NW_011332688.1 | Chr1|NW_011332688.1 | 1 | 6 | Remapped | NW_011332688.1 |
| NW_012132914.1 | Chr1|NW_012132914.1 | 2 | 38 | Remapped | NW_012132914.1 |
| NW_015495298.1 | Chr1|NW_015495298.1 | 1 | 4 | Remapped | NW_015495298.1 |
| NW_017852928.1 | Chr1|NW_017852928.1 | 1 | 4 | Remapped | NW_017852928.1 |
| NT_187523.1 | Chr2|NT_187523.1 | 4 | 7 | Remapped | NT_187523.1 |
| NT_187527.1 | Chr2|NT_187527.1 | 1 | 1 | Remapped | NT_187527.1 |
| NT_187647.1 | Chr2|NT_187647.1 | 4 | 7 | Remapped | NT_187647.1 |
| NW_015495299.1 | Chr2|NW_015495299.1 | 3 | 6 | Remapped | NW_015495299.1 |
| NT_187678.1 | Chr3|NT_187678.1 | 0 | 1 | Remapped | NT_187678.1 |
| NT_187689.1 | Chr3|NT_187689.1 | 1 | 2 | Remapped | NT_187689.1 |
| NT_187532.1 | Chr3|NT_187532.1 | 1 | 2 | Remapped | NT_187532.1 |
| NT_187534.1 | Chr3|NT_187534.1 | 2 | 5 | Remapped | NT_187534.1 |
| NT_187538.1 | Chr3|NT_187538.1 | 1 | 1 | Remapped | NT_187538.1 |
| NT_187539.1 | Chr3|NT_187539.1 | 1 | 1 | Remapped | NT_187539.1 |
| NW_012132916.1 | Chr3|NW_012132916.1 | 1 | 3 | Remapped | NW_012132916.1 |
| NW_019805489.1 | Chr3|NW_019805489.1 | 2 | 3 | Remapped | NW_019805489.1 |
| NT_167250.2 | Chr4|NT_167250.2 | 1 | 1 | Remapped | NT_167250.2 |
| NW_003315915.1 | Chr4|NW_003315915.1 | 1 | 7 | Remapped | NW_003315915.1 |
| NT_187548.1 | Chr5|NT_187548.1 | 2 | 2 | Remapped | NT_187548.1 |
| NT_187550.1 | Chr5|NT_187550.1 | 1 | 2 | Remapped | NT_187550.1 |
| NT_187551.1 | Chr5|NT_187551.1 | 1 | 1 | Remapped | NT_187551.1 |
| NT_187651.1 | Chr5|NT_187651.1 | 6 | 66 | Remapped | NT_187651.1 |
| NW_016107298.1 | Chr5|NW_016107298.1 | 3 | 5 | Remapped | NW_016107298.1 |
| NW_018654712.1 | Chr5|NW_018654712.1 | 1 | 1 | Remapped | NW_018654712.1 |
| NT_167246.2 | Chr6|NT_167246.2 | 13 | 272 | Remapped | NT_167246.2 |
| NT_167247.2 | Chr6|NT_167247.2 | 5 | 82 | Remapped | NT_167247.2 |
| NT_167249.2 | Chr6|NT_167249.2 | 12 | 319 | Remapped | NT_167249.2 |
| NT_167245.2 | Chr6|NT_167245.2 | 8 | 71 | Remapped | NT_167245.2 |
| NT_167244.2 | Chr6|NT_167244.2 | 2 | 6 | Remapped | NT_167244.2 |
| NT_187553.1 | Chr6|NT_187553.1 | 1 | 9 | Remapped | NT_187553.1 |
| NT_187555.1 | Chr6|NT_187555.1 | 1 | 4 | Remapped | NT_187555.1 |
| NW_009646200.1 | Chr6|NW_009646200.1 | 1 | 1 | Remapped | NW_009646200.1 |
| NW_018654713.1 | Chr6|NW_018654713.1 | 2 | 2 | Remapped | NW_018654713.1 |
| NT_187558.1 | Chr7|NT_187558.1 | 4 | 17 | Remapped | NT_187558.1 |
| NT_187560.1 | Chr7|NT_187560.1 | 1 | 1 | Remapped | NT_187560.1 |
| NT_187562.1 | Chr7|NT_187562.1 | 5 | 141 | Remapped | NT_187562.1 |
| NT_187653.1 | Chr7|NT_187653.1 | 4 | 17 | Remapped | NT_187653.1 |
| NW_018654714.1 | Chr7|NW_018654714.1 | 6 | 18 | Remapped | NW_018654714.1 |
| NW_018654715.1 | Chr7|NW_018654715.1 | 1 | 1 | Remapped | NW_018654715.1 |
| NT_187567.1 | Chr8|NT_187567.1 | 1 | 1 | Remapped | NT_187567.1 |
| NT_187570.1 | Chr8|NT_187570.1 | 1 | 1 | Remapped | NT_187570.1 |
| NT_187576.1 | Chr8|NT_187576.1 | 20 | 43 | Remapped | NT_187576.1 |
| NT_187655.1 | Chr8|NT_187655.1 | 1 | 1 | Remapped | NT_187655.1 |
| NW_017852931.1 | Chr8|NW_017852931.1 | 2 | 3 | Remapped | NW_017852931.1 |
| NW_018654717.1 | Chr8|NW_018654717.1 | 17 | 36 | Remapped | NW_018654717.1 |
| NW_013171806.1 | Chr10|NW_013171806.1 | 1 | 1 | Remapped | NW_013171806.1 |
| NT_187583.1 | Chr11|NT_187583.1 | 1 | 1 | Remapped | NT_187583.1 |
| NW_011332695.1 | Chr11|NW_011332695.1 | 1 | 1 | Remapped | NW_011332695.1 |
| NW_017363816.1 | Chr11|NW_017363816.1 | 1 | 1 | Remapped | NW_017363816.1 |
| NW_019805495.1 | Chr11|NW_019805495.1 | 1 | 1 | Remapped | NW_019805495.1 |
| NT_187658.1 | Chr12|NT_187658.1 | 3 | 50 | Remapped | NT_187658.1 |
| NT_187587.1 | Chr12|NT_187587.1 | 2 | 3 | Remapped | NT_187587.1 |
| NW_003315940.1 | Chr12|NW_003315940.1 | 1 | 1 | Remapped | NW_003315940.1 |
| NW_009646204.1 | Chr12|NW_009646204.1 | 1 | 1 | Remapped | NW_009646204.1 |
| NW_018654718.1 | Chr12|NW_018654718.1 | 1 | 4 | Remapped | NW_018654718.1 |
| NT_187594.1 | Chr13|NT_187594.1 | 0 | 3 | Remapped | NT_187594.1 |
| NW_011332698.1 | Chr13|NW_011332698.1 | 1 | 1 | Remapped | NW_011332698.1 |
| NT_187600.1 | Chr14|NT_187600.1 | 7 | 307 | Remapped | NT_187600.1 |
| NT_187601.1 | Chr14|NT_187601.1 | 3 | 3 | Remapped | NT_187601.1 |
| NW_018654721.1 | Chr14|NW_018654721.1 | 1 | 1 | Remapped | NW_018654721.1 |
| NW_018654722.1 | Chr14|NW_018654722.1 | 3 | 4 | Remapped | NW_018654722.1 |
| NT_187659.1 | Chr15|NT_187659.1 | 2 | 4 | Remapped | NT_187659.1 |
| NT_187660.1 | Chr15|NT_187660.1 | 9 | 24 | Remapped | NT_187660.1 |
| NT_187382.1 | Chr15|NT_187382.1 | 0 | 1 | Remapped | NT_187382.1 |
| NT_187602.1 | Chr15|NT_187602.1 | 1 | 2 | Remapped | NT_187602.1 |
| NT_187603.1 | Chr15|NT_187603.1 | 3 | 20 | Remapped | NT_187603.1 |
| NW_011332701.1 | Chr15|NW_011332701.1 | 9 | 25 | Remapped | NW_011332701.1 |
| NT_187383.1 | Chr16|NT_187383.1 | 0 | 3 | Remapped | NT_187383.1 |
| NT_187607.1 | Chr16|NT_187607.1 | 5 | 13 | Remapped | NT_187607.1 |
| NW_012132921.1 | Chr16|NW_012132921.1 | 3 | 7 | Remapped | NW_012132921.1 |
| NW_017852933.1 | Chr16|NW_017852933.1 | 4 | 13 | Remapped | NW_017852933.1 |
| NT_187661.1 | Chr17|NT_187661.1 | 5 | 61 | Remapped | NT_187661.1 |
| NT_187662.1 | Chr17|NT_187662.1 | 1 | 2 | Remapped | NT_187662.1 |
| NT_187663.1 | Chr17|NT_187663.1 | 2 | 146 | Remapped | NT_187663.1 |
| NT_167251.2 | Chr17|NT_167251.2 | 1 | 1 | Remapped | NT_167251.2 |
| NT_187612.1 | Chr17|NT_187612.1 | 2 | 4 | Remapped | NT_187612.1 |
| NT_187613.1 | Chr17|NT_187613.1 | 1 | 1 | Remapped | NT_187613.1 |
| NT_187614.1 | Chr17|NT_187614.1 | 7 | 63 | Remapped | NT_187614.1 |
| NT_187616.1 | Chr17|NT_187616.1 | 1 | 1 | Remapped | NT_187616.1 |
| NW_003315952.3 | Chr17|NW_003315952.3 | 2 | 5 | Remapped | NW_003315952.3 |
| NW_017363817.1 | Chr17|NW_017363817.1 | 0 | 1 | Remapped | NW_017363817.1 |
| NW_017363818.1 | Chr17|NW_017363818.1 | 1 | 1 | Remapped | NW_017363818.1 |
| NW_019805501.1 | Chr17|NW_019805501.1 | 1 | 1 | Remapped | NW_019805501.1 |
| NW_003315957.1 | Chr18|NW_003315957.1 | 1 | 1 | Remapped | NW_003315957.1 |
| NW_019805503.1 | Chr18|NW_019805503.1 | 1 | 1 | Remapped | NW_019805503.1 |
| NT_187693.1 | Chr19|NT_187693.1 | 4 | 13 | Remapped | NT_187693.1 |
| NW_003571061.2 | Chr19|NW_003571061.2 | 2 | 2 | Remapped | NW_003571061.2 |
| NW_003571057.2 | Chr19|NW_003571057.2 | 2 | 2 | Remapped | NW_003571057.2 |
| NW_003571058.2 | Chr19|NW_003571058.2 | 2 | 2 | Remapped | NW_003571058.2 |
| NW_003571059.2 | Chr19|NW_003571059.2 | 2 | 2 | Remapped | NW_003571059.2 |
| NW_003571060.1 | Chr19|NW_003571060.1 | 3 | 5 | Remapped | NW_003571060.1 |
| NW_003571056.2 | Chr19|NW_003571056.2 | 2 | 2 | Remapped | NW_003571056.2 |
| NW_003571055.2 | Chr19|NW_003571055.2 | 2 | 2 | Remapped | NW_003571055.2 |
| NW_003315962.1 | Chr19|NW_003315962.1 | 1 | 1 | Remapped | NW_003315962.1 |
| NW_003315965.1 | Chr19|NW_003315965.1 | 2 | 2 | Remapped | NW_003315965.1 |
| NW_003571054.1 | Chr19|NW_003571054.1 | 3 | 5 | Remapped | NW_003571054.1 |
| NT_187628.1 | Chr21|NT_187628.1 | 1 | 1 | Remapped | NT_187628.1 |
| NW_003315968.2 | Chr21|NW_003315968.2 | 1 | 1 | Remapped | NW_003315968.2 |
| NW_003315970.2 | Chr21|NW_003315970.2 | 1 | 1 | Remapped | NW_003315970.2 |
| NT_187629.1 | Chr22|NT_187629.1 | 3 | 5 | Remapped | NT_187629.1 |
| NT_187630.1 | Chr22|NT_187630.1 | 1 | 4 | Remapped | NT_187630.1 |
| NT_187633.1 | Chr22|NT_187633.1 | 4 | 15 | Remapped | NT_187633.1 |
| NW_003315972.2 | Chr22|NW_003315972.2 | 1 | 1 | Remapped | NW_003315972.2 |
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.10 | Chr1 | 172 | 754 | Remapped | NC_000001.10 |
| NC_000002.11 | Chr2 | 263 | 1,132 | Remapped | NC_000002.11 |
| NC_000003.11 | Chr3 | 247 | 3,354 | Remapped | NC_000003.11 |
| NC_000004.11 | Chr4 | 218 | 2,733 | Remapped | NC_000004.11 |
| NC_000005.9 | Chr5 | 226 | 687 | Remapped | NC_000005.9 |
| NC_000006.11 | Chr6 | 201 | 1,355 | Remapped | NC_000006.11 |
| NC_000007.13 | Chr7 | 221 | 706 | Remapped | NC_000007.13 |
| NC_000008.10 | Chr8 | 226 | 1,651 | Remapped | NC_000008.10 |
| NC_000009.11 | Chr9 | 211 | 685 | Remapped | NC_000009.11 |
| NC_000010.10 | Chr10 | 152 | 608 | Remapped | NC_000010.10 |
| NC_000011.9 | Chr11 | 195 | 1,500 | Remapped | NC_000011.9 |
| NC_000012.11 | Chr12 | 151 | 496 | Remapped | NC_000012.11 |
| NC_000013.10 | Chr13 | 145 | 667 | Remapped | NC_000013.10 |
| NC_000014.8 | Chr14 | 129 | 1,568 | Remapped | NC_000014.8 |
| NC_000015.9 | Chr15 | 141 | 884 | Remapped | NC_000015.9 |
| NC_000016.9 | Chr16 | 170 | 977 | Remapped | NC_000016.9 |
| NC_000017.10 | Chr17 | 96 | 1,243 | Remapped | NC_000017.10 |
| NC_000018.9 | Chr18 | 91 | 960 | Remapped | NC_000018.9 |
| NC_000019.9 | Chr19 | 92 | 741 | Remapped | NC_000019.9 |
| NC_000020.10 | Chr20 | 89 | 202 | Remapped | NC_000020.10 |
| NC_000021.8 | Chr21 | 54 | 184 | Remapped | NC_000021.8 |
| NC_000022.10 | Chr22 | 71 | 337 | Remapped | NC_000022.10 |
| NW_003871055.3 | Chr1|NW_003871055.3 | 7 | 82 | Remapped | NW_003871055.3 |
| NW_003871056.3 | Chr1|NW_003871056.3 | 2 | 8 | Remapped | NW_003871056.3 |
| NW_004504299.1 | Chr2|NW_004504299.1 | 2 | 2 | Remapped | NW_004504299.1 |
| NW_003871058.1 | Chr3|NW_003871058.1 | 2 | 4 | Remapped | NW_003871058.1 |
| NT_167250.1 | Chr4|NT_167250.1 | 1 | 1 | Remapped | NT_167250.1 |
| NW_003315915.1 | Chr4|NW_003315915.1 | 1 | 7 | Remapped | NW_003315915.1 |
| NW_003571034.1 | Chr4|NW_003571034.1 | 1 | 2 | Remapped | NW_003571034.1 |
| NW_004775427.1 | Chr4|NW_004775427.1 | 4 | 7 | Remapped | NW_004775427.1 |
| NW_004775428.1 | Chr5|NW_004775428.1 | 1 | 4 | Remapped | NW_004775428.1 |
| NT_167244.1 | Chr6|NT_167244.1 | 2 | 6 | Remapped | NT_167244.1 |
| NT_167245.1 | Chr6|NT_167245.1 | 8 | 71 | Remapped | NT_167245.1 |
| NT_167246.1 | Chr6|NT_167246.1 | 15 | 276 | Remapped | NT_167246.1 |
| NT_167247.1 | Chr6|NT_167247.1 | 5 | 82 | Remapped | NT_167247.1 |
| NT_167249.1 | Chr6|NT_167249.1 | 12 | 319 | Remapped | NT_167249.1 |
| NW_003571040.1 | Chr7|NW_003571040.1 | 5 | 141 | Remapped | NW_003571040.1 |
| NW_003871064.1 | Chr7|NW_003871064.1 | 3 | 4 | Remapped | NW_003871064.1 |
| NW_003871065.1 | Chr7|NW_003871065.1 | 1 | 1 | Remapped | NW_003871065.1 |
| NW_004775430.1 | Chr7|NW_004775430.1 | 1 | 1 | Remapped | NW_004775430.1 |
| NW_003571042.1 | Chr8|NW_003571042.1 | 16 | 37 | Remapped | NW_003571042.1 |
| NW_003871067.1 | Chr9|NW_003871067.1 | 1 | 2 | Remapped | NW_003871067.1 |
| NW_003315932.1 | Chr10|NW_003315932.1 | 1 | 1 | Remapped | NW_003315932.1 |
| NW_003871068.1 | Chr10|NW_003871068.1 | 3 | 42 | Remapped | NW_003871068.1 |
| NW_003871071.1 | Chr10|NW_003871071.1 | 3 | 6 | Remapped | NW_003871071.1 |
| NW_003571045.1 | Chr11|NW_003571045.1 | 1 | 1 | Remapped | NW_003571045.1 |
| NW_003871079.1 | Chr11|NW_003871079.1 | 1 | 3 | Remapped | NW_003871079.1 |
| NW_003871082.1 | Chr11|NW_003871082.1 | 1 | 1 | Remapped | NW_003871082.1 |
| NW_003315937.1 | Chr12|NW_003315937.1 | 1 | 1 | Remapped | NW_003315937.1 |
| NW_003315940.1 | Chr12|NW_003315940.1 | 1 | 1 | Remapped | NW_003315940.1 |
| NW_004166863.1 | Chr14|NW_004166863.1 | 8 | 281 | Remapped | NW_004166863.1 |
| NT_167251.1 | Chr17|NT_167251.1 | 1 | 21 | Remapped | NT_167251.1 |
| NW_003315949.1 | Chr17|NW_003315949.1 | 8 | 66 | Remapped | NW_003315949.1 |
| NW_003315950.2 | Chr17|NW_003315950.2 | 1 | 8 | Remapped | NW_003315950.2 |
| NW_003871086.1 | Chr17|NW_003871086.1 | 0 | 12 | Remapped | NW_003871086.1 |
| NW_004070872.2 | Chr17|NW_004070872.2 | 2 | 5 | Remapped | NW_004070872.2 |
| NW_004775433.1 | Chr17|NW_004775433.1 | 1 | 1 | Remapped | NW_004775433.1 |
| NW_003315957.1 | Chr18|NW_003315957.1 | 1 | 1 | Remapped | NW_003315957.1 |
| NW_003315962.1 | Chr19|NW_003315962.1 | 1 | 1 | Remapped | NW_003315962.1 |
| NW_003315965.1 | Chr19|NW_003315965.1 | 2 | 2 | Remapped | NW_003315965.1 |
| NW_003571053.2 | Chr19|NW_003571053.2 | 6 | 347 | Remapped | NW_003571053.2 |
| NW_003571060.1 | Chr19|NW_003571060.1 | 1 | 1 | Remapped | NW_003571060.1 |
| NW_004166865.1 | Chr19|NW_004166865.1 | 2 | 9 | Remapped | NW_004166865.1 |
| NW_004775434.1 | Chr19|NW_004775434.1 | 1 | 4 | Remapped | NW_004775434.1 |
| NW_004504304.1 | Chr20|NW_004504304.1 | 1 | 2 | Remapped | NW_004504304.1 |
| NW_003315968.1 | Chr21|NW_003315968.1 | 1 | 1 | Remapped | NW_003315968.1 |
| NW_003315970.1 | Chr21|NW_003315970.1 | 1 | 1 | Remapped | NW_003315970.1 |
| NW_003315972.1 | Chr22|NW_003315972.1 | 1 | 1 | Remapped | NW_003315972.1 |
| NW_004070873.1 | Chr22|NW_004070873.1 | 0 | 7 | Remapped | NW_004070873.1 |
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.9 | Chr1 | 172 | 754 | Submitted | NC_000001.9 |
| NC_000002.10 | Chr2 | 263 | 1,132 | Submitted | NC_000002.10 |
| NC_000003.10 | Chr3 | 247 | 3,354 | Submitted | NC_000003.10 |
| NC_000004.10 | Chr4 | 219 | 2,734 | Submitted | NC_000004.10 |
| NC_000005.8 | Chr5 | 226 | 687 | Submitted | NC_000005.8 |
| NC_000006.10 | Chr6 | 201 | 1,355 | Submitted | NC_000006.10 |
| NC_000007.12 | Chr7 | 222 | 714 | Submitted | NC_000007.12 |
| NC_000008.9 | Chr8 | 227 | 1,652 | Submitted | NC_000008.9 |
| NC_000009.10 | Chr9 | 211 | 685 | Submitted | NC_000009.10 |
| NC_000010.9 | Chr10 | 152 | 608 | Submitted | NC_000010.9 |
| NC_000011.8 | Chr11 | 195 | 1,500 | Submitted | NC_000011.8 |
| NC_000012.10 | Chr12 | 151 | 496 | Submitted | NC_000012.10 |
| NC_000013.9 | Chr13 | 145 | 667 | Submitted | NC_000013.9 |
| NC_000014.7 | Chr14 | 129 | 1,568 | Submitted | NC_000014.7 |
| NC_000015.8 | Chr15 | 144 | 890 | Submitted | NC_000015.8 |
| NC_000016.8 | Chr16 | 170 | 972 | Submitted | NC_000016.8 |
| NC_000017.9 | Chr17 | 101 | 1,255 | Submitted | NC_000017.9 |
| NC_000018.8 | Chr18 | 91 | 960 | Submitted | NC_000018.8 |
| NC_000019.8 | Chr19 | 95 | 751 | Submitted | NC_000019.8 |
| NC_000020.9 | Chr20 | 90 | 203 | Submitted | NC_000020.9 |
| NC_000021.7 | Chr21 | 54 | 184 | Submitted | NC_000021.7 |
| NC_000022.9 | Chr22 | 71 | 337 | Submitted | NC_000022.9 |
| Variant Region remap status | Variant Call remap status | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
| NC_000001.9 | Chr1 | 172 | 161 | 0 | 3 | 0 | 8 | 754 | 663 | 0 | 3 | 0 | 88 |
| NC_000002.10 | Chr2 | 263 | 255 | 4 | 2 | 0 | 2 | 1,132 | 1,123 | 5 | 2 | 0 | 2 |
| NC_000003.10 | Chr3 | 247 | 243 | 1 | 1 | 0 | 2 | 3,354 | 3,347 | 2 | 1 | 0 | 4 |
| NC_000004.10 | Chr4 | 219 | 209 | 2 | 0 | 1 | 7 | 2,734 | 2,713 | 3 | 0 | 1 | 17 |
| NC_000005.8 | Chr5 | 226 | 219 | 4 | 2 | 0 | 1 | 687 | 667 | 14 | 2 | 0 | 4 |
| NC_000006.10 | Chr6 | 201 | 173 | 1 | 1 | 0 | 26 | 1,355 | 871 | 1 | 3 | 0 | 480 |
| NC_000007.12 | Chr7 | 222 | 200 | 5 | 6 | 1 | 10 | 714 | 482 | 36 | 46 | 3 | 147 |
| NC_000008.9 | Chr8 | 227 | 203 | 5 | 4 | 0 | 15 | 1,652 | 1,567 | 5 | 44 | 0 | 36 |
| NC_000009.10 | Chr9 | 211 | 207 | 0 | 3 | 0 | 1 | 685 | 673 | 2 | 8 | 0 | 2 |
| NC_000010.9 | Chr10 | 152 | 137 | 2 | 6 | 0 | 7 | 608 | 479 | 68 | 12 | 0 | 49 |
| NC_000011.8 | Chr11 | 195 | 186 | 0 | 6 | 0 | 3 | 1,500 | 1,487 | 0 | 8 | 0 | 5 |
| NC_000012.10 | Chr12 | 151 | 148 | 0 | 1 | 0 | 2 | 496 | 491 | 0 | 3 | 0 | 2 |
| NC_000013.9 | Chr13 | 145 | 145 | 0 | 0 | 0 | 0 | 667 | 667 | 0 | 0 | 0 | 0 |
| NC_000014.7 | Chr14 | 129 | 118 | 2 | 1 | 0 | 8 | 1,568 | 1,232 | 47 | 1 | 0 | 288 |
| NC_000015.8 | Chr15 | 144 | 130 | 6 | 5 | 3 | 0 | 890 | 717 | 22 | 145 | 6 | 0 |
| NC_000016.8 | Chr16 | 170 | 169 | 0 | 0 | 0 | 1 | 972 | 970 | 0 | 0 | 0 | 2 |
| NC_000017.9 | Chr17 | 101 | 74 | 11 | 8 | 0 | 8 | 1,255 | 461 | 677 | 16 | 0 | 101 |
| NC_000018.8 | Chr18 | 91 | 89 | 0 | 1 | 0 | 1 | 960 | 958 | 0 | 1 | 0 | 1 |
| NC_000019.8 | Chr19 | 95 | 82 | 2 | 1 | 0 | 10 | 751 | 387 | 9 | 1 | 0 | 354 |
| NC_000020.9 | Chr20 | 90 | 88 | 0 | 0 | 1 | 1 | 203 | 200 | 0 | 0 | 1 | 2 |
| NC_000021.7 | Chr21 | 54 | 51 | 0 | 1 | 0 | 2 | 184 | 181 | 0 | 1 | 0 | 2 |
| NC_000022.9 | Chr22 | 71 | 67 | 0 | 3 | 0 | 1 | 337 | 313 | 0 | 23 | 0 | 1 |
| Variant Region remap status | Variant Call remap status | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
| NC_000001.9 | Chr1 | 172 | 137 | 17 | 9 | 1 | 8 | 754 | 550 | 124 | 22 | 3 | 55 |
| NC_000002.10 | Chr2 | 263 | 247 | 6 | 2 | 0 | 8 | 1,132 | 1,070 | 45 | 3 | 0 | 14 |
| NC_000003.10 | Chr3 | 247 | 228 | 11 | 0 | 0 | 8 | 3,354 | 3,323 | 16 | 0 | 0 | 15 |
| NC_000004.10 | Chr4 | 219 | 209 | 7 | 0 | 1 | 2 | 2,734 | 2,691 | 34 | 0 | 1 | 8 |
| NC_000005.8 | Chr5 | 226 | 207 | 4 | 1 | 0 | 14 | 687 | 595 | 14 | 1 | 0 | 77 |
| NC_000006.10 | Chr6 | 201 | 160 | 9 | 1 | 1 | 30 | 1,355 | 843 | 13 | 3 | 1 | 495 |
| NC_000007.12 | Chr7 | 222 | 185 | 14 | 6 | 1 | 16 | 714 | 429 | 105 | 32 | 8 | 140 |
| NC_000008.9 | Chr8 | 227 | 174 | 8 | 5 | 0 | 40 | 1,652 | 1,514 | 12 | 43 | 0 | 83 |
| NC_000009.10 | Chr9 | 211 | 205 | 4 | 1 | 1 | 0 | 685 | 673 | 9 | 1 | 2 | 0 |
| NC_000010.9 | Chr10 | 152 | 137 | 9 | 2 | 3 | 1 | 608 | 517 | 78 | 9 | 3 | 1 |
| NC_000011.8 | Chr11 | 195 | 179 | 10 | 2 | 1 | 3 | 1,500 | 1,449 | 44 | 2 | 2 | 3 |
| NC_000012.10 | Chr12 | 151 | 142 | 1 | 0 | 0 | 8 | 496 | 436 | 1 | 0 | 0 | 59 |
| NC_000013.9 | Chr13 | 145 | 141 | 1 | 2 | 0 | 1 | 667 | 652 | 4 | 7 | 0 | 4 |
| NC_000014.7 | Chr14 | 129 | 105 | 8 | 2 | 0 | 14 | 1,568 | 1,195 | 12 | 46 | 0 | 315 |
| NC_000015.8 | Chr15 | 144 | 116 | 5 | 11 | 0 | 12 | 890 | 677 | 12 | 155 | 1 | 45 |
| NC_000016.8 | Chr16 | 170 | 156 | 1 | 1 | 0 | 12 | 972 | 936 | 1 | 2 | 0 | 33 |
| NC_000017.9 | Chr17 | 101 | 65 | 16 | 4 | 1 | 15 | 1,255 | 448 | 567 | 70 | 3 | 167 |
| NC_000018.8 | Chr18 | 91 | 86 | 2 | 0 | 1 | 2 | 960 | 954 | 3 | 0 | 1 | 2 |
| NC_000019.8 | Chr19 | 95 | 83 | 6 | 0 | 0 | 6 | 751 | 706 | 37 | 0 | 0 | 8 |
| NC_000020.9 | Chr20 | 90 | 87 | 2 | 1 | 0 | 0 | 203 | 200 | 2 | 1 | 0 | 0 |
| NC_000021.7 | Chr21 | 54 | 44 | 7 | 0 | 0 | 3 | 184 | 167 | 14 | 0 | 0 | 3 |
| NC_000022.9 | Chr22 | 71 | 44 | 18 | 1 | 1 | 7 | 337 | 257 | 55 | 2 | 1 | 22 |
Samplesets
Number of Samplesets: 1
- Name:
- ThaiCNV
- Sampleset Type:
- Control
- Description:
- Normal general control set without genetic diseases
- Size:
- 3,017
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- None reported
| Sample ID | Subject ID | Sex | Ethnicity | Subject Phenotype |
|---|---|---|---|---|
| C1D12-1 | C1D12-1 | Female | THAI | Not reported |
| C1A10-2 | C1A10-2 | Female | THAI | Not reported |
| C1B10-2 | C1B10-2 | Male | THAI | Not reported |
| C1B08-1 | C1B08-1 | Male | THAI | Not reported |
| C1D02-2 | C1D02-2 | Male | THAI | Not reported |
| C1D05-2 | C1D05-2 | Male | THAI | Not reported |
| C1A07-2 | C1A07-2 | Male | THAI | Not reported |
| C1C12-2 | C1C12-2 | Female | THAI | Not reported |
| C1D06-2 | C1D06-2 | Male | THAI | Not reported |
| C1D09-1 | C1D09-1 | Female | THAI | Not reported |
| C1A10-1 | C1A10-1 | Male | THAI | Not reported |
| C1C02-2 | C1C02-2 | Female | THAI | Not reported |
| C1A03-3 | C1A03-3 | Male | THAI | Not reported |
| C1A11-1 | C1A11-1 | Male | THAI | Not reported |
| C1B04-1 | C1B04-1 | Male | THAI | Not reported |
| C1B09-1 | C1B09-1 | Female | THAI | Not reported |
| C1D10-2 | C1D10-2 | Male | THAI | Not reported |
| C1C09-1 | C1C09-1 | Male | THAI | Not reported |
| C1A03-2 | C1A03-2 | Female | THAI | Not reported |
| C1A08-2 | C1A08-2 | Male | THAI | Not reported |
| C1D11-1 | C1D11-1 | Male | THAI | Not reported |
| C1C07-1 | C1C07-1 | Female | THAI | Not reported |
| C1A07-3 | C1A07-3 | Female | THAI | Not reported |
| C1C03-2 | C1C03-2 | Female | THAI | Not reported |
| C1D02-1 | C1D02-1 | Male | THAI | Not reported |
| C1C08-2 | C1C08-2 | Male | THAI | Not reported |
| C1C06-2 | C1C06-2 | Female | THAI | Not reported |
| C1A05-3 | C1A05-3 | Male | THAI | Not reported |
| C1D04-1 | C1D04-1 | Female | THAI | Not reported |
| C1C12-1 | C1C12-1 | Female | THAI | Not reported |
| C1A08-3 | C1A08-3 | Female | THAI | Not reported |
| C1C05-1 | C1C05-1 | Female | THAI | Not reported |
| C1C01-1 | C1C01-1 | Female | THAI | Not reported |
| C1B06-2 | C1B06-2 | Male | THAI | Not reported |
| C1A02-2 | C1A02-2 | Male | THAI | Not reported |
| C1D09-2 | C1D09-2 | Male | THAI | Not reported |
| C1D10-1 | C1D10-1 | Female | THAI | Not reported |
| C1B08-2 | C1B08-2 | Female | THAI | Not reported |
| C1B01-1 | C1B01-1 | Male | THAI | Not reported |
| C1A06-2 | C1A06-2 | Male | THAI | Not reported |
| C1A12-2 | C1A12-2 | Male | THAI | Not reported |
| C1B12-2 | C1B12-2 | Male | THAI | Not reported |
| C1C05-2 | C1C05-2 | Male | THAI | Not reported |
| C1A06-3 | C1A06-3 | Female | THAI | Not reported |
| C1C04-2 | C1C04-2 | Male | THAI | Not reported |
| C1A03-1 | C1A03-1 | Female | THAI | Not reported |
| C1A04-2 | C1A04-2 | Female | THAI | Not reported |
| C1C03-1 | C1C03-1 | Female | THAI | Not reported |
| C1A04-1 | C1A04-1 | Female | THAI | Not reported |
| C1A09-2 | C1A09-2 | Male | THAI | Not reported |
| C1D07-1 | C1D07-1 | Male | THAI | Not reported |
| C1A01-3 | C1A01-3 | Male | THAI | Not reported |
| C1C07-2 | C1C07-2 | Female | THAI | Not reported |
| C1D08-2 | C1D08-2 | Female | THAI | Not reported |
| C1A01-1 | C1A01-1 | Female | THAI | Not reported |
| C1A06-1 | C1A06-1 | Male | THAI | Not reported |
| C1A02-1 | C1A02-1 | Female | THAI | Not reported |
| C1C10-2 | C1C10-2 | Male | THAI | Not reported |
| C1B04-2 | C1B04-2 | Female | THAI | Not reported |
| C1C10-1 | C1C10-1 | Male | THAI | Not reported |
| C1A01-2 | C1A01-2 | Female | THAI | Not reported |
| C1A05-1 | C1A05-1 | Female | THAI | Not reported |
| C1E01-2 | C1E01-2 | Male | THAI | Not reported |
| C1B03-2 | C1B03-2 | Male | THAI | Not reported |
| C1B05-2 | C1B05-2 | Male | THAI | Not reported |
| C1D01-2 | C1D01-2 | Female | THAI | Not reported |
| C1C08-1 | C1C08-1 | Male | THAI | Not reported |
| C1C09-2 | C1C09-2 | Male | THAI | Not reported |
| C1D01-1 | C1D01-1 | Female | THAI | Not reported |
| C1C04-1 | C1C04-1 | Female | THAI | Not reported |
| C1A09-1 | C1A09-1 | Male | THAI | Not reported |
| C1D04-2 | C1D04-2 | Female | THAI | Not reported |
| C1A04-3 | C1A04-3 | Male | THAI | Not reported |
| C1C11-1 | C1C11-1 | Male | THAI | Not reported |
| C1C06-1 | C1C06-1 | Female | THAI | Not reported |
| C1D06-1 | C1D06-1 | Female | THAI | Not reported |
| C1C11-2 | C1C11-2 | Male | THAI | Not reported |
| C1A05-2 | C1A05-2 | Female | THAI | Not reported |
| C1B10-1 | C1B10-1 | Female | THAI | Not reported |
| C1B11-2 | C1B11-2 | Female | THAI | Not reported |
| C1C01-2 | C1C01-2 | Female | THAI | Not reported |
| C1A12-1 | C1A12-1 | Male | THAI | Not reported |
| C1B02-1 | C1B02-1 | Male | THAI | Not reported |
| C1D07-2 | C1D07-2 | Female | THAI | Not reported |
| C1A11-2 | C1A11-2 | Female | THAI | Not reported |
| C1B11-1 | C1B11-1 | Male | THAI | Not reported |
| C1B01-2 | C1B01-2 | Female | THAI | Not reported |
| C1B03-1 | C1B03-1 | Female | THAI | Not reported |
| C1B09-2 | C1B09-2 | Female | THAI | Not reported |
| C1D03-2 | C1D03-2 | Female | THAI | Not reported |
| C1A07-1 | C1A07-1 | Female | THAI | Not reported |
| C1B02-2 | C1B02-2 | Female | THAI | Not reported |
| C1B12-1 | C1B12-1 | Male | THAI | Not reported |
| C1B06-1 | C1B06-1 | Male | THAI | Not reported |
| C1B07-2 | C1B07-2 | Male | THAI | Not reported |
| C1C02-1 | C1C02-1 | Male | THAI | Not reported |
| C1D11-2 | C1D11-2 | Female | THAI | Not reported |
| C1B05-1 | C1B05-1 | Female | THAI | Not reported |
| C1E01-1 | C1E01-1 | Male | THAI | Not reported |
| C1D12-2 | C1D12-2 | Male | THAI | Not reported |
Experimental Details
| Experiment ID | Type | Method | Analysis | Platforms | Number of Variant Calls |
|---|---|---|---|---|---|
| 1 | Discovery | SNP array | Probe signal intensity | Illumina HumanHap 550 | 163 |
| 2 | Discovery | SNP array | Probe signal intensity | Illumina HumanHap 610 | 20,664 |
| 3 | Discovery | SNP array | Probe signal intensity | Illumina Human OmniExpress | 2,631 |