estd217 (Besenbacher et al. 2015)
- Organism:
- Human
- Study Type:
- Control Set
- Submitter:
- Simon Rasmussen
- Description:
- Sequencing of Danish parent-offspring trios to determine genomic variation within the Danish population. First release comprises of ten trios sequenced to 50X using libraries of insert sizes from 180nt to 800nt. See Variant Summary counts for estd217 in dbVar Variant Summary.
- Project:
- PRJEB7725
- Publication(s):
- Besenbacher et al. 2015
Detailed Information: Download 40141 Variant Regions, Download 40141 Variant Calls, Download Both, FTP
Variant Summary
Assembly used for analysis:
Remapped: GRCh38.p12 (hg38)
Submitted: GRCh37 (hg19)
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.11 | Chr1 | 2,936 | 2,936 | Remapped | NC_000001.11 |
| NC_000002.12 | Chr2 | 2,876 | 2,876 | Remapped | NC_000002.12 |
| NC_000003.12 | Chr3 | 2,251 | 2,251 | Remapped | NC_000003.12 |
| NC_000004.12 | Chr4 | 2,385 | 2,385 | Remapped | NC_000004.12 |
| NC_000005.10 | Chr5 | 2,166 | 2,166 | Remapped | NC_000005.10 |
| NC_000006.12 | Chr6 | 2,292 | 2,292 | Remapped | NC_000006.12 |
| NC_000007.14 | Chr7 | 2,553 | 2,553 | Remapped | NC_000007.14 |
| NC_000008.11 | Chr8 | 1,888 | 1,888 | Remapped | NC_000008.11 |
| NC_000009.12 | Chr9 | 1,575 | 1,575 | Remapped | NC_000009.12 |
| NC_000010.11 | Chr10 | 2,056 | 2,056 | Remapped | NC_000010.11 |
| NC_000011.10 | Chr11 | 1,761 | 1,761 | Remapped | NC_000011.10 |
| NC_000012.12 | Chr12 | 1,892 | 1,892 | Remapped | NC_000012.12 |
| NC_000013.11 | Chr13 | 1,219 | 1,219 | Remapped | NC_000013.11 |
| NC_000014.9 | Chr14 | 1,166 | 1,166 | Remapped | NC_000014.9 |
| NC_000015.10 | Chr15 | 1,047 | 1,047 | Remapped | NC_000015.10 |
| NC_000016.10 | Chr16 | 1,488 | 1,488 | Remapped | NC_000016.10 |
| NC_000017.11 | Chr17 | 1,457 | 1,457 | Remapped | NC_000017.11 |
| NC_000018.10 | Chr18 | 1,005 | 1,005 | Remapped | NC_000018.10 |
| NC_000019.10 | Chr19 | 1,623 | 1,623 | Remapped | NC_000019.10 |
| NC_000020.11 | Chr20 | 1,014 | 1,014 | Remapped | NC_000020.11 |
| NC_000021.9 | Chr21 | 665 | 665 | Remapped | NC_000021.9 |
| NC_000022.11 | Chr22 | 741 | 741 | Remapped | NC_000022.11 |
| NC_000023.11 | ChrX | 1,699 | 1,699 | Remapped | NC_000023.11 |
| NC_000024.10 | ChrY | 305 | 305 | Remapped | NC_000024.10 |
| NT_187513.1 | Unplaced|NT_187513.1 | 4 | 4 | Remapped | NT_187513.1 |
| NT_187361.1 | Chr1|NT_187361.1 | 1 | 1 | Remapped | NT_187361.1 |
| NT_187514.1 | Chr1|NT_187514.1 | 2 | 2 | Remapped | NT_187514.1 |
| NT_187515.1 | Chr1|NT_187515.1 | 6 | 6 | Remapped | NT_187515.1 |
| NT_187516.1 | Chr1|NT_187516.1 | 12 | 12 | Remapped | NT_187516.1 |
| NT_187518.1 | Chr1|NT_187518.1 | 9 | 9 | Remapped | NT_187518.1 |
| NT_187519.1 | Chr1|NT_187519.1 | 8 | 8 | Remapped | NT_187519.1 |
| NT_187521.1 | Chr1|NT_187521.1 | 1 | 1 | Remapped | NT_187521.1 |
| NT_187646.1 | Chr1|NT_187646.1 | 9 | 9 | Remapped | NT_187646.1 |
| NW_003315905.1 | Chr1|NW_003315905.1 | 1 | 1 | Remapped | NW_003315905.1 |
| NW_003315906.1 | Chr1|NW_003315906.1 | 2 | 2 | Remapped | NW_003315906.1 |
| NW_003315907.2 | Chr1|NW_003315907.2 | 4 | 4 | Remapped | NW_003315907.2 |
| NW_009646194.1 | Chr1|NW_009646194.1 | 4 | 4 | Remapped | NW_009646194.1 |
| NW_009646195.1 | Chr1|NW_009646195.1 | 2 | 2 | Remapped | NW_009646195.1 |
| NW_009646196.1 | Chr1|NW_009646196.1 | 2 | 2 | Remapped | NW_009646196.1 |
| NW_011332687.1 | Chr1|NW_011332687.1 | 3 | 3 | Remapped | NW_011332687.1 |
| NW_011332688.1 | Chr1|NW_011332688.1 | 12 | 12 | Remapped | NW_011332688.1 |
| NW_012132914.1 | Chr1|NW_012132914.1 | 2 | 2 | Remapped | NW_012132914.1 |
| NW_014040925.1 | Chr1|NW_014040925.1 | 2 | 2 | Remapped | NW_014040925.1 |
| NW_014040926.1 | Chr1|NW_014040926.1 | 7 | 7 | Remapped | NW_014040926.1 |
| NW_014040927.1 | Chr1|NW_014040927.1 | 3 | 3 | Remapped | NW_014040927.1 |
| NW_015495298.1 | Chr1|NW_015495298.1 | 1 | 1 | Remapped | NW_015495298.1 |
| NW_017852928.1 | Chr1|NW_017852928.1 | 4 | 4 | Remapped | NW_017852928.1 |
| NW_018654706.1 | Chr1|NW_018654706.1 | 5 | 5 | Remapped | NW_018654706.1 |
| NW_018654708.1 | Chr1|NW_018654708.1 | 1 | 1 | Remapped | NW_018654708.1 |
| NW_019805487.1 | Chr1|NW_019805487.1 | 2 | 2 | Remapped | NW_019805487.1 |
| NT_187522.1 | Chr2|NT_187522.1 | 4 | 4 | Remapped | NT_187522.1 |
| NT_187525.1 | Chr2|NT_187525.1 | 6 | 6 | Remapped | NT_187525.1 |
| NT_187526.1 | Chr2|NT_187526.1 | 4 | 4 | Remapped | NT_187526.1 |
| NT_187527.1 | Chr2|NT_187527.1 | 13 | 13 | Remapped | NT_187527.1 |
| NT_187528.1 | Chr2|NT_187528.1 | 12 | 12 | Remapped | NT_187528.1 |
| NT_187529.1 | Chr2|NT_187529.1 | 21 | 21 | Remapped | NT_187529.1 |
| NT_187530.1 | Chr2|NT_187530.1 | 2 | 2 | Remapped | NT_187530.1 |
| NT_187531.1 | Chr2|NT_187531.1 | 3 | 3 | Remapped | NT_187531.1 |
| NW_003315908.1 | Chr2|NW_003315908.1 | 1 | 1 | Remapped | NW_003315908.1 |
| NW_003315909.1 | Chr2|NW_003315909.1 | 1 | 1 | Remapped | NW_003315909.1 |
| NW_011332689.1 | Chr2|NW_011332689.1 | 9 | 9 | Remapped | NW_011332689.1 |
| NW_011332690.1 | Chr2|NW_011332690.1 | 6 | 6 | Remapped | NW_011332690.1 |
| NW_012132915.1 | Chr2|NW_012132915.1 | 16 | 16 | Remapped | NW_012132915.1 |
| NW_015495299.1 | Chr2|NW_015495299.1 | 6 | 6 | Remapped | NW_015495299.1 |
| NW_018654709.1 | Chr2|NW_018654709.1 | 2 | 2 | Remapped | NW_018654709.1 |
| NW_018654710.1 | Chr2|NW_018654710.1 | 2 | 2 | Remapped | NW_018654710.1 |
| NT_187678.1 | Chr3|NT_187678.1 | 8 | 8 | Remapped | NT_187678.1 |
| NT_187688.1 | Chr3|NT_187688.1 | 10 | 10 | Remapped | NT_187688.1 |
| NT_187689.1 | Chr3|NT_187689.1 | 15 | 15 | Remapped | NT_187689.1 |
| NT_187690.1 | Chr3|NT_187690.1 | 10 | 10 | Remapped | NT_187690.1 |
| NT_187691.1 | Chr3|NT_187691.1 | 10 | 10 | Remapped | NT_187691.1 |
| NT_187532.1 | Chr3|NT_187532.1 | 15 | 15 | Remapped | NT_187532.1 |
| NT_187533.1 | Chr3|NT_187533.1 | 1 | 1 | Remapped | NT_187533.1 |
| NT_187534.1 | Chr3|NT_187534.1 | 5 | 5 | Remapped | NT_187534.1 |
| NT_187536.1 | Chr3|NT_187536.1 | 3 | 3 | Remapped | NT_187536.1 |
| NT_187537.1 | Chr3|NT_187537.1 | 6 | 6 | Remapped | NT_187537.1 |
| NT_187538.1 | Chr3|NT_187538.1 | 2 | 2 | Remapped | NT_187538.1 |
| NT_187539.1 | Chr3|NT_187539.1 | 1 | 1 | Remapped | NT_187539.1 |
| NT_187649.1 | Chr3|NT_187649.1 | 9 | 9 | Remapped | NT_187649.1 |
| NW_009646197.1 | Chr3|NW_009646197.1 | 2 | 2 | Remapped | NW_009646197.1 |
| NW_011332691.1 | Chr3|NW_011332691.1 | 9 | 9 | Remapped | NW_011332691.1 |
| NW_012132916.1 | Chr3|NW_012132916.1 | 4 | 4 | Remapped | NW_012132916.1 |
| NW_017363813.1 | Chr3|NW_017363813.1 | 4 | 4 | Remapped | NW_017363813.1 |
| NW_018654711.1 | Chr3|NW_018654711.1 | 4 | 4 | Remapped | NW_018654711.1 |
| NW_019805488.1 | Chr3|NW_019805488.1 | 2 | 2 | Remapped | NW_019805488.1 |
| NW_019805489.1 | Chr3|NW_019805489.1 | 3 | 3 | Remapped | NW_019805489.1 |
| NW_019805490.1 | Chr3|NW_019805490.1 | 2 | 2 | Remapped | NW_019805490.1 |
| NW_019805492.1 | Chr3|NW_019805492.1 | 3 | 3 | Remapped | NW_019805492.1 |
| NT_187679.1 | Chr4|NT_187679.1 | 26 | 26 | Remapped | NT_187679.1 |
| NT_113793.3 | Chr4|NT_113793.3 | 1 | 1 | Remapped | NT_113793.3 |
| NT_187540.1 | Chr4|NT_187540.1 | 3 | 3 | Remapped | NT_187540.1 |
| NT_187541.1 | Chr4|NT_187541.1 | 1 | 1 | Remapped | NT_187541.1 |
| NT_187542.1 | Chr4|NT_187542.1 | 2 | 2 | Remapped | NT_187542.1 |
| NT_187543.1 | Chr4|NT_187543.1 | 16 | 16 | Remapped | NT_187543.1 |
| NT_187544.1 | Chr4|NT_187544.1 | 1 | 1 | Remapped | NT_187544.1 |
| NT_187545.1 | Chr4|NT_187545.1 | 7 | 7 | Remapped | NT_187545.1 |
| NT_187650.1 | Chr4|NT_187650.1 | 19 | 19 | Remapped | NT_187650.1 |
| NW_003315914.1 | Chr4|NW_003315914.1 | 4 | 4 | Remapped | NW_003315914.1 |
| NW_003315915.1 | Chr4|NW_003315915.1 | 1 | 1 | Remapped | NW_003315915.1 |
| NW_013171799.1 | Chr4|NW_013171799.1 | 1 | 1 | Remapped | NW_013171799.1 |
| NW_013171800.1 | Chr4|NW_013171800.1 | 1 | 1 | Remapped | NW_013171800.1 |
| NW_013171801.1 | Chr4|NW_013171801.1 | 3 | 3 | Remapped | NW_013171801.1 |
| NW_017363814.1 | Chr4|NW_017363814.1 | 3 | 3 | Remapped | NW_017363814.1 |
| NT_187546.1 | Chr5|NT_187546.1 | 9 | 9 | Remapped | NT_187546.1 |
| NT_187547.1 | Chr5|NT_187547.1 | 10 | 10 | Remapped | NT_187547.1 |
| NT_187548.1 | Chr5|NT_187548.1 | 6 | 6 | Remapped | NT_187548.1 |
| NT_187549.1 | Chr5|NT_187549.1 | 3 | 3 | Remapped | NT_187549.1 |
| NT_187550.1 | Chr5|NT_187550.1 | 17 | 17 | Remapped | NT_187550.1 |
| NT_187551.1 | Chr5|NT_187551.1 | 5 | 5 | Remapped | NT_187551.1 |
| NT_187651.1 | Chr5|NT_187651.1 | 11 | 11 | Remapped | NT_187651.1 |
| NT_187652.1 | Chr5|NT_187652.1 | 10 | 10 | Remapped | NT_187652.1 |
| NW_003315917.2 | Chr5|NW_003315917.2 | 21 | 21 | Remapped | NW_003315917.2 |
| NW_003315918.1 | Chr5|NW_003315918.1 | 1 | 1 | Remapped | NW_003315918.1 |
| NW_003315919.1 | Chr5|NW_003315919.1 | 3 | 3 | Remapped | NW_003315919.1 |
| NW_003315920.1 | Chr5|NW_003315920.1 | 2 | 2 | Remapped | NW_003315920.1 |
| NW_003571036.1 | Chr5|NW_003571036.1 | 2 | 2 | Remapped | NW_003571036.1 |
| NW_009646199.1 | Chr5|NW_009646199.1 | 2 | 2 | Remapped | NW_009646199.1 |
| NW_016107297.1 | Chr5|NW_016107297.1 | 1 | 1 | Remapped | NW_016107297.1 |
| NW_016107298.1 | Chr5|NW_016107298.1 | 20 | 20 | Remapped | NW_016107298.1 |
| NT_187692.1 | Chr6|NT_187692.1 | 1 | 1 | Remapped | NT_187692.1 |
| NT_187552.1 | Chr6|NT_187552.1 | 8 | 8 | Remapped | NT_187552.1 |
| NT_187553.1 | Chr6|NT_187553.1 | 13 | 13 | Remapped | NT_187553.1 |
| NT_187555.1 | Chr6|NT_187555.1 | 3 | 3 | Remapped | NT_187555.1 |
| NT_187556.1 | Chr6|NT_187556.1 | 3 | 3 | Remapped | NT_187556.1 |
| NT_187557.1 | Chr6|NT_187557.1 | 6 | 6 | Remapped | NT_187557.1 |
| NW_003315921.1 | Chr6|NW_003315921.1 | 3 | 3 | Remapped | NW_003315921.1 |
| NW_004166862.2 | Chr6|NW_004166862.2 | 18 | 18 | Remapped | NW_004166862.2 |
| NW_009646200.1 | Chr6|NW_009646200.1 | 4 | 4 | Remapped | NW_009646200.1 |
| NW_012132918.1 | Chr6|NW_012132918.1 | 4 | 4 | Remapped | NW_012132918.1 |
| NW_013171802.1 | Chr6|NW_013171802.1 | 2 | 2 | Remapped | NW_013171802.1 |
| NW_013171803.1 | Chr6|NW_013171803.1 | 1 | 1 | Remapped | NW_013171803.1 |
| NW_017363815.1 | Chr6|NW_017363815.1 | 3 | 3 | Remapped | NW_017363815.1 |
| NW_018654713.1 | Chr6|NW_018654713.1 | 3 | 3 | Remapped | NW_018654713.1 |
| NT_187558.1 | Chr7|NT_187558.1 | 7 | 7 | Remapped | NT_187558.1 |
| NT_187559.1 | Chr7|NT_187559.1 | 4 | 4 | Remapped | NT_187559.1 |
| NT_187560.1 | Chr7|NT_187560.1 | 28 | 28 | Remapped | NT_187560.1 |
| NT_187561.1 | Chr7|NT_187561.1 | 5 | 5 | Remapped | NT_187561.1 |
| NT_187562.1 | Chr7|NT_187562.1 | 10 | 10 | Remapped | NT_187562.1 |
| NT_187563.1 | Chr7|NT_187563.1 | 7 | 7 | Remapped | NT_187563.1 |
| NT_187564.1 | Chr7|NT_187564.1 | 4 | 4 | Remapped | NT_187564.1 |
| NT_187653.1 | Chr7|NT_187653.1 | 8 | 8 | Remapped | NT_187653.1 |
| NW_012132919.1 | Chr7|NW_012132919.1 | 4 | 4 | Remapped | NW_012132919.1 |
| NW_017852930.1 | Chr7|NW_017852930.1 | 4 | 4 | Remapped | NW_017852930.1 |
| NW_018654714.1 | Chr7|NW_018654714.1 | 5 | 5 | Remapped | NW_018654714.1 |
| NW_018654715.1 | Chr7|NW_018654715.1 | 1 | 1 | Remapped | NW_018654715.1 |
| NW_019805493.1 | Chr7|NW_019805493.1 | 2 | 2 | Remapped | NW_019805493.1 |
| NT_187680.1 | Chr8|NT_187680.1 | 12 | 12 | Remapped | NT_187680.1 |
| NT_187565.1 | Chr8|NT_187565.1 | 29 | 29 | Remapped | NT_187565.1 |
| NT_187566.1 | Chr8|NT_187566.1 | 2 | 2 | Remapped | NT_187566.1 |
| NT_187567.1 | Chr8|NT_187567.1 | 1 | 1 | Remapped | NT_187567.1 |
| NT_187568.1 | Chr8|NT_187568.1 | 25 | 25 | Remapped | NT_187568.1 |
| NT_187569.1 | Chr8|NT_187569.1 | 4 | 4 | Remapped | NT_187569.1 |
| NT_187570.1 | Chr8|NT_187570.1 | 8 | 8 | Remapped | NT_187570.1 |
| NT_187571.1 | Chr8|NT_187571.1 | 6 | 6 | Remapped | NT_187571.1 |
| NT_187572.1 | Chr8|NT_187572.1 | 12 | 12 | Remapped | NT_187572.1 |
| NT_187573.1 | Chr8|NT_187573.1 | 6 | 6 | Remapped | NT_187573.1 |
| NT_187574.1 | Chr8|NT_187574.1 | 4 | 4 | Remapped | NT_187574.1 |
| NT_187575.1 | Chr8|NT_187575.1 | 1 | 1 | Remapped | NT_187575.1 |
| NT_187576.1 | Chr8|NT_187576.1 | 45 | 45 | Remapped | NT_187576.1 |
| NT_187577.1 | Chr8|NT_187577.1 | 5 | 5 | Remapped | NT_187577.1 |
| NT_187654.1 | Chr8|NT_187654.1 | 22 | 22 | Remapped | NT_187654.1 |
| NT_187655.1 | Chr8|NT_187655.1 | 15 | 15 | Remapped | NT_187655.1 |
| NW_017852931.1 | Chr8|NW_017852931.1 | 1 | 1 | Remapped | NW_017852931.1 |
| NW_017852932.1 | Chr8|NW_017852932.1 | 2 | 2 | Remapped | NW_017852932.1 |
| NW_018654716.1 | Chr8|NW_018654716.1 | 9 | 9 | Remapped | NW_018654716.1 |
| NW_018654717.1 | Chr8|NW_018654717.1 | 98 | 98 | Remapped | NW_018654717.1 |
| NW_019805494.1 | Chr8|NW_019805494.1 | 1 | 1 | Remapped | NW_019805494.1 |
| NT_187578.1 | Chr9|NT_187578.1 | 2 | 2 | Remapped | NT_187578.1 |
| NW_003315930.1 | Chr9|NW_003315930.1 | 1 | 1 | Remapped | NW_003315930.1 |
| NW_009646201.1 | Chr9|NW_009646201.1 | 10 | 10 | Remapped | NW_009646201.1 |
| NW_013171805.1 | Chr9|NW_013171805.1 | 3 | 3 | Remapped | NW_013171805.1 |
| NT_187579.1 | Chr10|NT_187579.1 | 5 | 5 | Remapped | NT_187579.1 |
| NT_187580.1 | Chr10|NT_187580.1 | 1 | 1 | Remapped | NT_187580.1 |
| NW_003315934.1 | Chr10|NW_003315934.1 | 4 | 4 | Remapped | NW_003315934.1 |
| NW_003315935.1 | Chr10|NW_003315935.1 | 5 | 5 | Remapped | NW_003315935.1 |
| NW_009646202.1 | Chr10|NW_009646202.1 | 2 | 2 | Remapped | NW_009646202.1 |
| NW_013171806.1 | Chr10|NW_013171806.1 | 2 | 2 | Remapped | NW_013171806.1 |
| NW_013171807.1 | Chr10|NW_013171807.1 | 2 | 2 | Remapped | NW_013171807.1 |
| NT_187681.1 | Chr11|NT_187681.1 | 12 | 12 | Remapped | NT_187681.1 |
| NT_187656.1 | Chr11|NT_187656.1 | 5 | 5 | Remapped | NT_187656.1 |
| NT_187657.1 | Chr11|NT_187657.1 | 13 | 13 | Remapped | NT_187657.1 |
| NT_187581.1 | Chr11|NT_187581.1 | 9 | 9 | Remapped | NT_187581.1 |
| NT_187582.1 | Chr11|NT_187582.1 | 3 | 3 | Remapped | NT_187582.1 |
| NT_187583.1 | Chr11|NT_187583.1 | 1 | 1 | Remapped | NT_187583.1 |
| NT_187584.1 | Chr11|NT_187584.1 | 14 | 14 | Remapped | NT_187584.1 |
| NT_187585.1 | Chr11|NT_187585.1 | 5 | 5 | Remapped | NT_187585.1 |
| NT_187586.1 | Chr11|NT_187586.1 | 12 | 12 | Remapped | NT_187586.1 |
| NW_003315936.1 | Chr11|NW_003315936.1 | 3 | 3 | Remapped | NW_003315936.1 |
| NW_009646203.1 | Chr11|NW_009646203.1 | 3 | 3 | Remapped | NW_009646203.1 |
| NW_011332695.1 | Chr11|NW_011332695.1 | 1 | 1 | Remapped | NW_011332695.1 |
| NW_015148966.1 | Chr11|NW_015148966.1 | 9 | 9 | Remapped | NW_015148966.1 |
| NW_019805496.1 | Chr11|NW_019805496.1 | 6 | 6 | Remapped | NW_019805496.1 |
| NW_019805497.1 | Chr11|NW_019805497.1 | 14 | 14 | Remapped | NW_019805497.1 |
| NT_187658.1 | Chr12|NT_187658.1 | 6 | 6 | Remapped | NT_187658.1 |
| NT_187587.1 | Chr12|NT_187587.1 | 9 | 9 | Remapped | NT_187587.1 |
| NT_187588.1 | Chr12|NT_187588.1 | 3 | 3 | Remapped | NT_187588.1 |
| NT_187589.1 | Chr12|NT_187589.1 | 1 | 1 | Remapped | NT_187589.1 |
| NT_187590.1 | Chr12|NT_187590.1 | 2 | 2 | Remapped | NT_187590.1 |
| NW_003315938.1 | Chr12|NW_003315938.1 | 1 | 1 | Remapped | NW_003315938.1 |
| NW_003315939.2 | Chr12|NW_003315939.2 | 2 | 2 | Remapped | NW_003315939.2 |
| NW_003315940.1 | Chr12|NW_003315940.1 | 5 | 5 | Remapped | NW_003315940.1 |
| NW_003315941.1 | Chr12|NW_003315941.1 | 4 | 4 | Remapped | NW_003315941.1 |
| NW_003571049.1 | Chr12|NW_003571049.1 | 4 | 4 | Remapped | NW_003571049.1 |
| NW_003571050.1 | Chr12|NW_003571050.1 | 4 | 4 | Remapped | NW_003571050.1 |
| NW_009646204.1 | Chr12|NW_009646204.1 | 1 | 1 | Remapped | NW_009646204.1 |
| NW_011332696.1 | Chr12|NW_011332696.1 | 4 | 4 | Remapped | NW_011332696.1 |
| NW_011332697.1 | Chr12|NW_011332697.1 | 1 | 1 | Remapped | NW_011332697.1 |
| NW_013171809.1 | Chr12|NW_013171809.1 | 2 | 2 | Remapped | NW_013171809.1 |
| NW_015148967.1 | Chr12|NW_015148967.1 | 5 | 5 | Remapped | NW_015148967.1 |
| NW_018654718.1 | Chr12|NW_018654718.1 | 18 | 18 | Remapped | NW_018654718.1 |
| NW_018654719.1 | Chr12|NW_018654719.1 | 2 | 2 | Remapped | NW_018654719.1 |
| NW_018654720.1 | Chr12|NW_018654720.1 | 1 | 1 | Remapped | NW_018654720.1 |
| NW_019805499.1 | Chr12|NW_019805499.1 | 3 | 3 | Remapped | NW_019805499.1 |
| NT_187592.1 | Chr13|NT_187592.1 | 10 | 10 | Remapped | NT_187592.1 |
| NT_187593.1 | Chr13|NT_187593.1 | 3 | 3 | Remapped | NT_187593.1 |
| NT_187594.1 | Chr13|NT_187594.1 | 5 | 5 | Remapped | NT_187594.1 |
| NT_187595.1 | Chr13|NT_187595.1 | 3 | 3 | Remapped | NT_187595.1 |
| NT_187596.1 | Chr13|NT_187596.1 | 6 | 6 | Remapped | NT_187596.1 |
| NT_187597.1 | Chr13|NT_187597.1 | 2 | 2 | Remapped | NT_187597.1 |
| NW_011332698.1 | Chr13|NW_011332698.1 | 29 | 29 | Remapped | NW_011332698.1 |
| NW_011332699.1 | Chr13|NW_011332699.1 | 4 | 4 | Remapped | NW_011332699.1 |
| NW_011332700.1 | Chr13|NW_011332700.1 | 3 | 3 | Remapped | NW_011332700.1 |
| NW_013171810.1 | Chr13|NW_013171810.1 | 1 | 1 | Remapped | NW_013171810.1 |
| NW_013171811.1 | Chr13|NW_013171811.1 | 2 | 2 | Remapped | NW_013171811.1 |
| NT_187598.1 | Chr14|NT_187598.1 | 5 | 5 | Remapped | NT_187598.1 |
| NT_187599.1 | Chr14|NT_187599.1 | 2 | 2 | Remapped | NT_187599.1 |
| NT_187600.1 | Chr14|NT_187600.1 | 65 | 65 | Remapped | NT_187600.1 |
| NT_187601.1 | Chr14|NT_187601.1 | 20 | 20 | Remapped | NT_187601.1 |
| NW_018654721.1 | Chr14|NW_018654721.1 | 4 | 4 | Remapped | NW_018654721.1 |
| NW_018654722.1 | Chr14|NW_018654722.1 | 19 | 19 | Remapped | NW_018654722.1 |
| NT_187659.1 | Chr15|NT_187659.1 | 4 | 4 | Remapped | NT_187659.1 |
| NT_187660.1 | Chr15|NT_187660.1 | 54 | 54 | Remapped | NT_187660.1 |
| NT_187603.1 | Chr15|NT_187603.1 | 3 | 3 | Remapped | NT_187603.1 |
| NT_187605.1 | Chr15|NT_187605.1 | 5 | 5 | Remapped | NT_187605.1 |
| NT_187606.1 | Chr15|NT_187606.1 | 8 | 8 | Remapped | NT_187606.1 |
| NW_003315943.1 | Chr15|NW_003315943.1 | 2 | 2 | Remapped | NW_003315943.1 |
| NW_003315944.2 | Chr15|NW_003315944.2 | 6 | 6 | Remapped | NW_003315944.2 |
| NW_011332701.1 | Chr15|NW_011332701.1 | 60 | 60 | Remapped | NW_011332701.1 |
| NT_187607.1 | Chr16|NT_187607.1 | 35 | 35 | Remapped | NT_187607.1 |
| NT_187608.1 | Chr16|NT_187608.1 | 3 | 3 | Remapped | NT_187608.1 |
| NT_187609.1 | Chr16|NT_187609.1 | 5 | 5 | Remapped | NT_187609.1 |
| NT_187610.1 | Chr16|NT_187610.1 | 11 | 11 | Remapped | NT_187610.1 |
| NW_003315946.1 | Chr16|NW_003315946.1 | 1 | 1 | Remapped | NW_003315946.1 |
| NW_013171812.1 | Chr16|NW_013171812.1 | 1 | 1 | Remapped | NW_013171812.1 |
| NW_013171813.1 | Chr16|NW_013171813.1 | 3 | 3 | Remapped | NW_013171813.1 |
| NW_017852933.1 | Chr16|NW_017852933.1 | 19 | 19 | Remapped | NW_017852933.1 |
| NW_018654723.1 | Chr16|NW_018654723.1 | 1 | 1 | Remapped | NW_018654723.1 |
| NW_019805500.1 | Chr16|NW_019805500.1 | 4 | 4 | Remapped | NW_019805500.1 |
| NT_187661.1 | Chr17|NT_187661.1 | 3 | 3 | Remapped | NT_187661.1 |
| NT_187662.1 | Chr17|NT_187662.1 | 18 | 18 | Remapped | NT_187662.1 |
| NT_187663.1 | Chr17|NT_187663.1 | 21 | 21 | Remapped | NT_187663.1 |
| NT_187664.1 | Chr17|NT_187664.1 | 12 | 12 | Remapped | NT_187664.1 |
| NW_003871093.1 | Chr17|NW_003871093.1 | 3 | 3 | Remapped | NW_003871093.1 |
| NT_167251.2 | Chr17|NT_167251.2 | 3 | 3 | Remapped | NT_167251.2 |
| NT_187611.1 | Chr17|NT_187611.1 | 6 | 6 | Remapped | NT_187611.1 |
| NT_187612.1 | Chr17|NT_187612.1 | 25 | 25 | Remapped | NT_187612.1 |
| NT_187613.1 | Chr17|NT_187613.1 | 23 | 23 | Remapped | NT_187613.1 |
| NT_187614.1 | Chr17|NT_187614.1 | 48 | 48 | Remapped | NT_187614.1 |
| NT_187616.1 | Chr17|NT_187616.1 | 5 | 5 | Remapped | NT_187616.1 |
| NW_003315952.3 | Chr17|NW_003315952.3 | 27 | 27 | Remapped | NW_003315952.3 |
| NW_003315953.2 | Chr17|NW_003315953.2 | 1 | 1 | Remapped | NW_003315953.2 |
| NW_003315954.1 | Chr17|NW_003315954.1 | 1 | 1 | Remapped | NW_003315954.1 |
| NW_003315955.1 | Chr17|NW_003315955.1 | 5 | 5 | Remapped | NW_003315955.1 |
| NW_003871091.1 | Chr17|NW_003871091.1 | 11 | 11 | Remapped | NW_003871091.1 |
| NW_003871092.1 | Chr17|NW_003871092.1 | 2 | 2 | Remapped | NW_003871092.1 |
| NW_016107299.1 | Chr17|NW_016107299.1 | 1 | 1 | Remapped | NW_016107299.1 |
| NW_017363817.1 | Chr17|NW_017363817.1 | 15 | 15 | Remapped | NW_017363817.1 |
| NW_017363818.1 | Chr17|NW_017363818.1 | 1 | 1 | Remapped | NW_017363818.1 |
| NW_017363819.1 | Chr17|NW_017363819.1 | 4 | 4 | Remapped | NW_017363819.1 |
| NW_019805501.1 | Chr17|NW_019805501.1 | 5 | 5 | Remapped | NW_019805501.1 |
| NT_187665.1 | Chr18|NT_187665.1 | 14 | 14 | Remapped | NT_187665.1 |
| NT_187666.1 | Chr18|NT_187666.1 | 5 | 5 | Remapped | NT_187666.1 |
| NT_187617.1 | Chr18|NT_187617.1 | 9 | 9 | Remapped | NT_187617.1 |
| NW_003315956.1 | Chr18|NW_003315956.1 | 6 | 6 | Remapped | NW_003315956.1 |
| NW_003315957.1 | Chr18|NW_003315957.1 | 1 | 1 | Remapped | NW_003315957.1 |
| NW_003315958.1 | Chr18|NW_003315958.1 | 12 | 12 | Remapped | NW_003315958.1 |
| NW_003315960.1 | Chr18|NW_003315960.1 | 1 | 1 | Remapped | NW_003315960.1 |
| NW_003315961.1 | Chr18|NW_003315961.1 | 5 | 5 | Remapped | NW_003315961.1 |
| NW_013171814.1 | Chr18|NW_013171814.1 | 7 | 7 | Remapped | NW_013171814.1 |
| NW_018654724.1 | Chr18|NW_018654724.1 | 2 | 2 | Remapped | NW_018654724.1 |
| NW_019805503.1 | Chr18|NW_019805503.1 | 5 | 5 | Remapped | NW_019805503.1 |
| NT_187693.1 | Chr19|NT_187693.1 | 48 | 48 | Remapped | NT_187693.1 |
| NW_003571061.2 | Chr19|NW_003571061.2 | 36 | 36 | Remapped | NW_003571061.2 |
| NW_003571057.2 | Chr19|NW_003571057.2 | 24 | 24 | Remapped | NW_003571057.2 |
| NW_003571058.2 | Chr19|NW_003571058.2 | 24 | 24 | Remapped | NW_003571058.2 |
| NW_003571059.2 | Chr19|NW_003571059.2 | 24 | 24 | Remapped | NW_003571059.2 |
| NW_003571060.1 | Chr19|NW_003571060.1 | 39 | 39 | Remapped | NW_003571060.1 |
| NW_003571056.2 | Chr19|NW_003571056.2 | 24 | 24 | Remapped | NW_003571056.2 |
| NW_003571055.2 | Chr19|NW_003571055.2 | 32 | 32 | Remapped | NW_003571055.2 |
| NT_187619.1 | Chr19|NT_187619.1 | 1 | 1 | Remapped | NT_187619.1 |
| NT_187620.1 | Chr19|NT_187620.1 | 4 | 4 | Remapped | NT_187620.1 |
| NT_187621.1 | Chr19|NT_187621.1 | 5 | 5 | Remapped | NT_187621.1 |
| NT_187622.1 | Chr19|NT_187622.1 | 7 | 7 | Remapped | NT_187622.1 |
| NW_003315962.1 | Chr19|NW_003315962.1 | 21 | 21 | Remapped | NW_003315962.1 |
| NW_003315963.1 | Chr19|NW_003315963.1 | 1 | 1 | Remapped | NW_003315963.1 |
| NW_003315964.2 | Chr19|NW_003315964.2 | 6 | 6 | Remapped | NW_003315964.2 |
| NW_003571054.1 | Chr19|NW_003571054.1 | 37 | 37 | Remapped | NW_003571054.1 |
| NW_009646206.1 | Chr19|NW_009646206.1 | 4 | 4 | Remapped | NW_009646206.1 |
| NW_014040929.1 | Chr19|NW_014040929.1 | 15 | 15 | Remapped | NW_014040929.1 |
| NT_187623.1 | Chr20|NT_187623.1 | 8 | 8 | Remapped | NT_187623.1 |
| NT_187624.1 | Chr20|NT_187624.1 | 15 | 15 | Remapped | NT_187624.1 |
| NT_187625.1 | Chr20|NT_187625.1 | 3 | 3 | Remapped | NT_187625.1 |
| NW_003315966.2 | Chr20|NW_003315966.2 | 3 | 3 | Remapped | NW_003315966.2 |
| NT_187626.1 | Chr21|NT_187626.1 | 4 | 4 | Remapped | NT_187626.1 |
| NT_187627.1 | Chr21|NT_187627.1 | 1 | 1 | Remapped | NT_187627.1 |
| NT_187628.1 | Chr21|NT_187628.1 | 1 | 1 | Remapped | NT_187628.1 |
| NW_003315967.2 | Chr21|NW_003315967.2 | 2 | 2 | Remapped | NW_003315967.2 |
| NW_003315968.2 | Chr21|NW_003315968.2 | 3 | 3 | Remapped | NW_003315968.2 |
| NW_003315969.2 | Chr21|NW_003315969.2 | 1 | 1 | Remapped | NW_003315969.2 |
| NW_003315970.2 | Chr21|NW_003315970.2 | 1 | 1 | Remapped | NW_003315970.2 |
| NT_187682.1 | Chr22|NT_187682.1 | 2 | 2 | Remapped | NT_187682.1 |
| NW_004504305.1 | Chr22|NW_004504305.1 | 1 | 1 | Remapped | NW_004504305.1 |
| NW_015148969.1 | Chr22|NW_015148969.1 | 1 | 1 | Remapped | NW_015148969.1 |
| NT_187629.1 | Chr22|NT_187629.1 | 5 | 5 | Remapped | NT_187629.1 |
| NT_187630.1 | Chr22|NT_187630.1 | 6 | 6 | Remapped | NT_187630.1 |
| NT_187631.1 | Chr22|NT_187631.1 | 3 | 3 | Remapped | NT_187631.1 |
| NT_187632.1 | Chr22|NT_187632.1 | 2 | 2 | Remapped | NT_187632.1 |
| NT_187633.1 | Chr22|NT_187633.1 | 2 | 2 | Remapped | NT_187633.1 |
| NW_003315971.2 | Chr22|NW_003315971.2 | 1 | 1 | Remapped | NW_003315971.2 |
| NW_003315972.2 | Chr22|NW_003315972.2 | 3 | 3 | Remapped | NW_003315972.2 |
| NT_187667.1 | ChrX|NT_187667.1 | 45 | 45 | Remapped | NT_187667.1 |
| NW_017363820.1 | ChrX|NW_017363820.1 | 3 | 3 | Remapped | NW_017363820.1 |
| NT_187634.1 | ChrX|NT_187634.1 | 44 | 44 | Remapped | NT_187634.1 |
| NT_187635.1 | ChrX|NT_187635.1 | 1 | 1 | Remapped | NT_187635.1 |
| NW_009646209.1 | ChrY|NW_009646209.1 | 2 | 2 | Remapped | NW_009646209.1 |
| NW_018654725.1 | ChrY|NW_018654725.1 | 1 | 1 | Remapped | NW_018654725.1 |
| NW_018654726.1 | ChrY|NW_018654726.1 | 11 | 11 | Remapped | NW_018654726.1 |
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.10 | Chr1 | 2,950 | 2,950 | Submitted | NC_000001.10 |
| NC_000002.11 | Chr2 | 2,883 | 2,883 | Submitted | NC_000002.11 |
| NC_000003.11 | Chr3 | 2,252 | 2,252 | Submitted | NC_000003.11 |
| NC_000004.11 | Chr4 | 2,386 | 2,386 | Submitted | NC_000004.11 |
| NC_000005.9 | Chr5 | 2,166 | 2,166 | Submitted | NC_000005.9 |
| NC_000006.11 | Chr6 | 2,292 | 2,292 | Submitted | NC_000006.11 |
| NC_000007.13 | Chr7 | 2,557 | 2,557 | Submitted | NC_000007.13 |
| NC_000008.10 | Chr8 | 1,895 | 1,895 | Submitted | NC_000008.10 |
| NC_000009.11 | Chr9 | 1,577 | 1,577 | Submitted | NC_000009.11 |
| NC_000010.10 | Chr10 | 2,059 | 2,059 | Submitted | NC_000010.10 |
| NC_000011.9 | Chr11 | 1,763 | 1,763 | Submitted | NC_000011.9 |
| NC_000012.11 | Chr12 | 1,892 | 1,892 | Submitted | NC_000012.11 |
| NC_000013.10 | Chr13 | 1,219 | 1,219 | Submitted | NC_000013.10 |
| NC_000014.8 | Chr14 | 1,176 | 1,176 | Submitted | NC_000014.8 |
| NC_000015.9 | Chr15 | 1,049 | 1,049 | Submitted | NC_000015.9 |
| NC_000016.9 | Chr16 | 1,485 | 1,485 | Submitted | NC_000016.9 |
| NC_000017.10 | Chr17 | 1,464 | 1,464 | Submitted | NC_000017.10 |
| NC_000018.9 | Chr18 | 1,005 | 1,005 | Submitted | NC_000018.9 |
| NC_000019.9 | Chr19 | 1,634 | 1,634 | Submitted | NC_000019.9 |
| NC_000020.10 | Chr20 | 1,015 | 1,015 | Submitted | NC_000020.10 |
| NC_000021.8 | Chr21 | 665 | 665 | Submitted | NC_000021.8 |
| NC_000022.10 | Chr22 | 745 | 745 | Submitted | NC_000022.10 |
| NC_000023.10 | ChrX | 1,707 | 1,707 | Submitted | NC_000023.10 |
| NC_000024.9 | ChrY | 305 | 305 | Submitted | NC_000024.9 |
| Variant Region remap status | Variant Call remap status | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
| NC_000001.10 | Chr1 | 2,950 | 2,835 | 8 | 4 | 9 | 94 | 2,950 | 2,835 | 8 | 4 | 9 | 94 |
| NC_000002.11 | Chr2 | 2,883 | 2,772 | 2 | 2 | 3 | 104 | 2,883 | 2,772 | 2 | 2 | 3 | 104 |
| NC_000003.11 | Chr3 | 2,252 | 2,184 | 1 | 0 | 1 | 66 | 2,252 | 2,184 | 1 | 0 | 1 | 66 |
| NC_000004.11 | Chr4 | 2,386 | 2,329 | 0 | 0 | 1 | 56 | 2,386 | 2,329 | 0 | 0 | 1 | 56 |
| NC_000005.9 | Chr5 | 2,166 | 2,063 | 0 | 0 | 0 | 103 | 2,166 | 2,063 | 0 | 0 | 0 | 103 |
| NC_000006.11 | Chr6 | 2,292 | 2,219 | 1 | 0 | 0 | 72 | 2,292 | 2,219 | 1 | 0 | 0 | 72 |
| NC_000007.13 | Chr7 | 2,557 | 2,465 | 4 | 3 | 3 | 82 | 2,557 | 2,465 | 4 | 3 | 3 | 82 |
| NC_000008.10 | Chr8 | 1,895 | 1,618 | 0 | 4 | 1 | 272 | 1,895 | 1,618 | 0 | 4 | 1 | 272 |
| NC_000009.11 | Chr9 | 1,577 | 1,556 | 3 | 0 | 1 | 17 | 1,577 | 1,556 | 3 | 0 | 1 | 17 |
| NC_000010.10 | Chr10 | 2,059 | 2,033 | 1 | 1 | 3 | 21 | 2,059 | 2,033 | 1 | 1 | 3 | 21 |
| NC_000011.9 | Chr11 | 1,763 | 1,674 | 1 | 1 | 1 | 86 | 1,763 | 1,674 | 1 | 1 | 1 | 86 |
| NC_000012.11 | Chr12 | 1,892 | 1,814 | 2 | 0 | 0 | 76 | 1,892 | 1,814 | 2 | 0 | 0 | 76 |
| NC_000013.10 | Chr13 | 1,219 | 1,155 | 0 | 0 | 0 | 64 | 1,219 | 1,155 | 0 | 0 | 0 | 64 |
| NC_000014.8 | Chr14 | 1,176 | 1,052 | 4 | 1 | 5 | 114 | 1,176 | 1,052 | 4 | 1 | 5 | 114 |
| NC_000015.9 | Chr15 | 1,049 | 965 | 0 | 0 | 1 | 83 | 1,049 | 965 | 0 | 0 | 1 | 83 |
| NC_000016.9 | Chr16 | 1,485 | 1,401 | 0 | 0 | 1 | 83 | 1,485 | 1,401 | 0 | 0 | 1 | 83 |
| NC_000017.10 | Chr17 | 1,464 | 1,265 | 1 | 1 | 0 | 197 | 1,464 | 1,265 | 1 | 1 | 0 | 197 |
| NC_000018.9 | Chr18 | 1,005 | 955 | 0 | 0 | 0 | 50 | 1,005 | 955 | 0 | 0 | 0 | 50 |
| NC_000019.9 | Chr19 | 1,634 | 1,516 | 1 | 5 | 3 | 109 | 1,634 | 1,516 | 1 | 5 | 3 | 109 |
| NC_000020.10 | Chr20 | 1,015 | 985 | 0 | 0 | 1 | 29 | 1,015 | 985 | 0 | 0 | 1 | 29 |
| NC_000021.8 | Chr21 | 665 | 650 | 0 | 0 | 0 | 15 | 665 | 650 | 0 | 0 | 0 | 15 |
| NC_000022.10 | Chr22 | 745 | 711 | 2 | 5 | 4 | 23 | 745 | 711 | 2 | 5 | 4 | 23 |
| NC_000023.10 | ChrX | 1,707 | 1,635 | 7 | 8 | 8 | 49 | 1,707 | 1,635 | 7 | 8 | 8 | 49 |
| NC_000024.9 | ChrY | 305 | 291 | 0 | 0 | 0 | 14 | 305 | 291 | 0 | 0 | 0 | 14 |
Samplesets
Number of Samplesets: 1
- Name:
- Genome DK Release 1
- Sampleset Type:
- Control
- Description:
- Release 1 of the Danish pan genome project. Total of ten trios were sequenced to 50X, this sampleset comprises the aggregate SVs identified in the 20 parents
- Size:
- 20
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- None reported
| Sample ID | Cell Type | Subject ID | Sex | Ethnicity | Subject Phenotype |
|---|---|---|---|---|---|
| SAMEA3142194 | Whole blood | 1426-02 | Female | Danish | Not reported |
| SAMEA3142205 | Whole blood | 1390-02 | Female | Danish | Not reported |
| SAMEA3142196 | Whole blood | 1481-01 | Male | Danish | Not reported |
| SAMEA3142216 | Whole blood | 1006-01 | Male | Danish | Not reported |
| SAMEA3142223 | Whole blood | 1473-01 | Male | Danish | Not reported |
| SAMEA3142199 | Whole blood | 1473-02 | Female | Danish | Not reported |
| SAMEA3142195 | Whole blood | 1006-02 | Female | Danish | Not reported |
| SAMEA3142211 | Whole blood | 1025-01 | Male | Danish | Not reported |
| SAMEA3142197 | Whole blood | 1426-01 | Male | Danish | Not reported |
| SAMEA3142218 | Whole blood | 1497-02 | Female | Danish | Not reported |
| SAMEA3142219 | Whole blood | 1390-01 | Male | Danish | Not reported |
| SAMEA3142210 | Whole blood | 1423-01 | Male | Danish | Not reported |
| SAMEA3142202 | Whole blood | 1497-01 | Male | Danish | Not reported |
| SAMEA3142209 | Whole blood | 1304-02 | Female | Danish | Not reported |
| SAMEA3142222 | Whole blood | 1298-01 | Male | Danish | Not reported |
| SAMEA3142214 | Whole blood | 1481-02 | Female | Danish | Not reported |
| SAMEA3142221 | Whole blood | 1304-01 | Male | Danish | Not reported |
| SAMEA3142208 | Whole blood | 1423-02 | Female | Danish | Not reported |
| SAMEA3142201 | Whole blood | 1025-02 | Female | Danish | Not reported |
| SAMEA3142198 | Whole blood | 1298-02 | Female | Danish | Not reported |
Experimental Details
| Experiment ID | Type | Method | Analysis | Platforms | Number of Variant Calls |
|---|---|---|---|---|---|
| 1 | Discovery | Sequencing | de novo sequence assembly | Illumina HiSeq 2000 | 40,141 |